메뉴 건너뛰기




Volumn 139, Issue 4, 2005, Pages 2006-2016

Ecotype allelic variation in C-to-U editing extent of a mitochondrial transcript identifies RNA-editing quantitative trait loci in Arabidopsis

Author keywords

[No Author keywords available]

Indexed keywords

BIOCHEMISTRY; GENES; PLANT CELL CULTURE; REGRESSION ANALYSIS; TISSUE;

EID: 33645012771     PISSN: 00320889     EISSN: None     Source Type: Journal    
DOI: 10.1104/pp.105.069013     Document Type: Article
Times cited : (34)

References (46)
  • 1
    • 0036678039 scopus 로고    scopus 로고
    • A pentatricopeptide repeat-containing gene restores fertility to cytoplasmic male-sterile plants
    • Bentolila S, Alfonso AA, Hanson MR. (2002) A pentatricopeptide repeat-containing gene restores fertility to cytoplasmic male-sterile plants. Proc Natl Acad Sci USA 99: 10887-10892
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 10887-10892
    • Bentolila, S.1    Alfonso, A.A.2    Hanson, M.R.3
  • 2
    • 0035971213 scopus 로고    scopus 로고
    • Identification of GRY-EBP as an apolipoprotein B RNA-binding protein that interacts with both apobec-1 and apobec-1 complementation factor to modulate C to U editing
    • Blanc V, Navaratnam N, Henderson JO, Anant S, Kennedy S, Jarmuz A, Scott J, Davidson NO (2001) Identification of GRY-EBP as an apolipoprotein B RNA-binding protein that interacts with both apobec-1 and apobec-1 complementation factor to modulate C to U editing. J Biol Chem 276:10272-10233
    • (2001) J Biol Chem , vol.276 , pp. 10272-110233
    • Blanc, V.1    Navaratnam, N.2    Henderson, J.O.3    Anant, S.4    Kennedy, S.5    Jarmuz, A.6    Scott, J.7    Davidson, N.O.8
  • 4
    • 0036892814 scopus 로고    scopus 로고
    • Cross-competition in transgenic chloroplasts expressing single editing sites reveals shared cis elements
    • Chateigner-Boutin AL, Hanson MR (2002) Cross-competition in transgenic chloroplasts expressing single editing sites reveals shared cis elements. Mol Cell Biol 22: 8443-8456
    • (2002) Mol Cell Biol , vol.22 , pp. 8443-8456
    • Chateigner-Boutin, A.L.1    Hanson, M.R.2
  • 5
    • 0038043311 scopus 로고    scopus 로고
    • Developmental co-variation of RNA editing extent of plastid editing sites exhibiting similar cis-elements
    • Chateigner-Boutin AL, Hanson MR (2003) Developmental co-variation of RNA editing extent of plastid editing sites exhibiting similar cis-elements. Nucleic Acids Res 31: 2586-2594
    • (2003) Nucleic Acids Res , vol.31 , pp. 2586-2594
    • Chateigner-Boutin, A.L.1    Hanson, M.R.2
  • 6
    • 0029989864 scopus 로고    scopus 로고
    • Sequences directing C to U editing of the plastid psbL mRNA are located within a 22 nucleotide segment spanning the editing site
    • Chaudhuri S, Maliga P (1996) Sequences directing C to U editing of the plastid psbL mRNA are located within a 22 nucleotide segment spanning the editing site. EMBO J 15:5958-5964
    • (1996) EMBO J , vol.15 , pp. 5958-5964
    • Chaudhuri, S.1    Maliga, P.2
  • 7
    • 13444252846 scopus 로고    scopus 로고
    • Different patterns in the recognition of editing sites in plant mitochondria
    • Choury D, Farre JC, Jordana X, Araya A (2004) Different patterns in the recognition of editing sites in plant mitochondria. Nucleic Acids Res 32: 6397-6406
    • (2004) Nucleic Acids Res , vol.32 , pp. 6397-6406
    • Choury, D.1    Farre, J.C.2    Jordana, X.3    Araya, A.4
  • 8
    • 0028151261 scopus 로고
    • Empirical threshold values for quantitative trait mapping
    • Churchill G, Doerge RW (1994) Empirical threshold values for quantitative trait mapping. Genetics 138: 963-971
    • (1994) Genetics , vol.138 , pp. 963-971
    • Churchill, G.1    Doerge, R.W.2
  • 11
    • 0034697980 scopus 로고    scopus 로고
    • Predicting subcellular localization of proteins based on their N-terminal amino acid sequence
    • Emanuelsson O, Nielsen H, Brunak S, von Heijne G (2000) Predicting subcellular localization of proteins based on their N-terminal amino acid sequence. J Mol Biol 300: 1005-1016
    • (2000) J Mol Biol , vol.300 , pp. 1005-1016
    • Emanuelsson, O.1    Nielsen, H.2    Brunak, S.3    Von Heijne, G.4
  • 12
    • 0034802513 scopus 로고    scopus 로고
    • Cis recognition elements in plant mitochondrion RNA editing
    • Farré JC, Leon G, Jardana X, Araya A (2001) Cis recognition elements in plant mitochondrion RNA editing. Mol Cell Biol 21: 6731-6737
    • (2001) Mol Cell Biol , vol.21 , pp. 6731-6737
    • Farré, J.C.1    Leon, G.2    Jardana, X.3    Araya, A.4
  • 13
    • 0033592907 scopus 로고    scopus 로고
    • RNA editing in Arabidopsis mitochondria affects 441 C to U changes in ORFs
    • Giege P, Brennicke A (1999) RNA editing in Arabidopsis mitochondria affects 441 C to U changes in ORFs. Proc Natl Acad Sci USA 96: 15324-15329
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 15324-15329
    • Giege, P.1    Brennicke, A.2
  • 14
    • 0034507456 scopus 로고    scopus 로고
    • Functions and mechanisms of RNA editing
    • Gott JM, Emeson RB (2000) Functions and mechanisms of RNA editing. Annu Rev Genet 34: 499-531
    • (2000) Annu Rev Genet , vol.34 , pp. 499-531
    • Gott, J.M.1    Emeson, R.B.2
  • 15
    • 0344442430 scopus 로고    scopus 로고
    • The complete nucleotide sequence and RNA editing content of the mitochondria! genome of rapeseed (Brassica napus L.): Comparative analysis of the mitochondrial genomes of rapeseed and Arabidopsis thaliana
    • Handa H (2003) The complete nucleotide sequence and RNA editing content of the mitochondria! genome of rapeseed (Brassica napus L.): comparative analysis of the mitochondrial genomes of rapeseed and Arabidopsis thaliana. Nucleic Acids Res 31: 5907-5916
    • (2003) Nucleic Acids Res , vol.31 , pp. 5907-5916
    • Handa, H.1
  • 16
    • 2942696655 scopus 로고    scopus 로고
    • Interactions of mitochondrial and nuclear genes that affect male gametophyte development
    • Hanson MR, Bentolila S (2004) Interactions of mitochondrial and nuclear genes that affect male gametophyte development. Plant Cell (Suppl) 16: S154-S169
    • (2004) Plant Cell (Suppl) , vol.16
    • Hanson, M.R.1    Bentolila, S.2
  • 17
    • 0345393082 scopus 로고    scopus 로고
    • A nucleus-encoded factor, CRR2, is essential for the expression of chloroplast ndhB in Arabidopsis
    • Hashimoto M, Endo T, Peltier G, Tasaka M, Shikanai T (2003) A nucleus-encoded factor, CRR2, is essential for the expression of chloroplast ndhB in Arabidopsis. Plant J 36: 541-549
    • (2003) Plant J , vol.36 , pp. 541-549
    • Hashimoto, M.1    Endo, T.2    Peltier, G.3    Tasaka, M.4    Shikanai, T.5
  • 18
    • 17044412539 scopus 로고    scopus 로고
    • Substrate and cofactor requirements for ENA editing of chloroplast transcripts in Arabidopsis in vitro
    • Hegeman CE, Hayes ML, Hanson MR (2005) Substrate and cofactor requirements for ENA editing of chloroplast transcripts in Arabidopsis in vitro. Plant J 42: 124-132
    • (2005) Plant J , vol.42 , pp. 124-132
    • Hegeman, C.E.1    Hayes, M.L.2    Hanson, M.R.3
  • 19
    • 0035282916 scopus 로고    scopus 로고
    • Involvement of a site-specific trans-acting factor and a common RNA-binding protein in the editing of chloroplast mRNAs; development of a chloroplast in vitro RNA editing system
    • Hirose T, Sugiura M (2001) Involvement of a site-specific trans-acting factor and a common RNA-binding protein in the editing of chloroplast mRNAs; development of a chloroplast in vitro RNA editing system. EMBO J 20: 1144-1152
    • (2001) EMBO J , vol.20 , pp. 1144-1152
    • Hirose, T.1    Sugiura, M.2
  • 20
    • 0031783729 scopus 로고    scopus 로고
    • Eapeseed mitochondrial ccb2 06, a gene involved in cytochrome c biogenesis, is co-transcribed with the nad3 and rps12 genes; organization, transcription, and RNA editing of the nad3/rps12/ccb206 locus
    • Itani K, Handa H (1998) Eapeseed mitochondrial ccb2 06, a gene involved in cytochrome c biogenesis, is co-transcribed with the nad3 and rps12 genes; organization, transcription, and RNA editing of the nad3/rps12/ccb206 locus. Curr Genet 34:313-325
    • (1998) Curr Genet , vol.34 , pp. 313-325
    • Itani, K.1    Handa, H.2
  • 21
    • 0030670589 scopus 로고    scopus 로고
    • Efficient discovery of conserved patterns using a pattern graph
    • Jonassen I (1997) Efficient discovery of conserved patterns using a pattern graph. Comput Appl Biosci 13: 509-522
    • (1997) Comput Appl Biosci , vol.13 , pp. 509-522
    • Jonassen, I.1
  • 22
    • 0032029993 scopus 로고    scopus 로고
    • Site-selective inhibition of plastid RNA editing by heat shock and antibiotics; a role for plastid translation in RNA editing
    • Karcher D, Bock R (1998) Site-selective inhibition of plastid RNA editing by heat shock and antibiotics; a role for plastid translation in RNA editing. Nucleic Acids Res 26: 1185-1190
    • (1998) Nucleic Acids Res , vol.26 , pp. 1185-1190
    • Karcher, D.1    Bock, R.2
  • 24
    • 0037854732 scopus 로고    scopus 로고
    • Genetic characterization of a pentatricopeptide repeat protein gene, vrf687, that restores fertility in the cytoplasmic male-sterile Kosena radish
    • Koizuka N, Imai R, Fujimoto H, Hayakawa T, Kimura Y, Kohno-Murase J, Sakai T, Kawasaki S, Imamura J (2003) Genetic characterization of a pentatricopeptide repeat protein gene, vrf687, that restores fertility in the cytoplasmic male-sterile Kosena radish. Plant J 34: 407-415
    • (2003) Plant J , vol.34 , pp. 407-415
    • Koizuka, N.1    Imai, R.2    Fujimoto, H.3    Hayakawa, T.4    Kimura, Y.5    Kohno-Murase, J.6    Sakai, T.7    Kawasaki, S.8    Imamura, J.9
  • 26
    • 0027650566 scopus 로고
    • A procedure for mapping Arabidopsis mutations using co-dominant ecotype-specific PCE-based markers
    • Konieczny A, Ausubel FM (1993) A procedure for mapping Arabidopsis mutations using co-dominant ecotype-specific PCE-based markers. Plant J 4: 403-410
    • (1993) Plant J , vol.4 , pp. 403-410
    • Konieczny, A.1    Ausubel, F.M.2
  • 27
    • 12744253474 scopus 로고    scopus 로고
    • A pentatricopeptide repeat protein is essential for RNA editing in chloroplasts
    • Kotera E, Tasaka M, Shikanai T (2005) A pentatricopeptide repeat protein is essential for RNA editing in chloroplasts. Nature 433: 326-330
    • (2005) Nature , vol.433 , pp. 326-330
    • Kotera, E.1    Tasaka, M.2    Shikanai, T.3
  • 28
    • 0035169044 scopus 로고    scopus 로고
    • Low temperature affects the processing pattern and ENA editing status of the mitochondrial coxZ transcripts in wheat
    • Kurihara-Yonemoto S, Handa H (2001) Low temperature affects the processing pattern and ENA editing status of the mitochondrial coxZ transcripts in wheat. Curr Genet 40: 203-208
    • (2001) Curr Genet , vol.40 , pp. 203-208
    • Kurihara-Yonemoto, S.1    Handa, H.2
  • 29
    • 0000012426 scopus 로고
    • Eecombinant inbred lines for mapping RFLP and phenotypic markers in Arabidopsis markers in Arabidopsis thaliana
    • Lister C, Dean C (1993) Eecombinant inbred lines for mapping RFLP and phenotypic markers in Arabidopsis markers in Arabidopsis thaliana. Plant J 4: 745-750
    • (1993) Plant J , vol.4 , pp. 745-750
    • Lister, C.1    Dean, C.2
  • 30
    • 0026457066 scopus 로고
    • A single nuclear gene specifies the abundance and extent of ENA editing of a plant mitochondrial transcript
    • Lu B, Hanson MR (1992) A single nuclear gene specifies the abundance and extent of ENA editing of a plant mitochondrial transcript. Nucleic Acids Res 20: 5699-5703
    • (1992) Nucleic Acids Res , vol.20 , pp. 5699-5703
    • Lu, B.1    Hanson, M.R.2
  • 32
    • 0036784578 scopus 로고    scopus 로고
    • Eecognition of RNA editing sites is directed by unique proteins in chloroplasts; biochemical identification of its-acting elements and trans-acting factors involved in ENA editing in tobacco and pea chloroplasts
    • Miyamoto T, Obokata J, Sugiura M (2002) Eecognition of RNA editing sites is directed by unique proteins in chloroplasts; biochemical identification of its-acting elements and trans-acting factors involved in ENA editing in tobacco and pea chloroplasts. Mol Cell Biol 22: 6726-6734
    • (2002) Mol Cell Biol , vol.22 , pp. 6726-6734
    • Miyamoto, T.1    Obokata, J.2    Sugiura, M.3
  • 33
    • 0035169045 scopus 로고    scopus 로고
    • Heat stress results in incomplete C-to-U editing of maize chloroplast mRNAs and correlates with changes in chloroplast transcription rate
    • Nakajima Y, Mulligan RM (2001) Heat stress results in incomplete C-to-U editing of maize chloroplast mRNAs and correlates with changes in chloroplast transcription rate. Curr Genet 40: 209-213
    • (2001) Curr Genet , vol.40 , pp. 209-213
    • Nakajima, Y.1    Mulligan, R.M.2
  • 34
    • 0002715628 scopus 로고    scopus 로고
    • QGENE; software for marker-based genomic analysis and breeding
    • Nelson JC (1997) QGENE; software for marker-based genomic analysis and breeding. Mol Breed 3: 239-245
    • (1997) Mol Breed , vol.3 , pp. 239-245
    • Nelson, J.C.1
  • 35
    • 0036456491 scopus 로고    scopus 로고
    • The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: Frequent DNA sequence acquisition and loss during the evolution of flowering plants
    • Notsu Y, Masood S, Nishikawa T, Kubo N, Akiduki G, Nakazono M, Hirai A, Kadowaki K (2002) The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants. Mol Genet Genomics 268: 434-445
    • (2002) Mol Genet Genomics , vol.268 , pp. 434-445
    • Notsu, Y.1    Masood, S.2    Nishikawa, T.3    Kubo, N.4    Akiduki, G.5    Nakazono, M.6    Hirai, A.7    Kadowaki, K.8
  • 36
    • 0036233350 scopus 로고    scopus 로고
    • Transcript abundance supercedes editing efficiency as a factor in developmental variation of chloroplast gene expression
    • Peeters NM, Hanson MR (2002) Transcript abundance supercedes editing efficiency as a factor in developmental variation of chloroplast gene expression. RNA 8: 497-511
    • (2002) RNA , vol.8 , pp. 497-511
    • Peeters, N.M.1    Hanson, M.R.2
  • 38
    • 0028409698 scopus 로고
    • The highly edited orf2Q6 in Oenothera mitochondria may encode a component of a heme transporter involved in oytochrome c biogenesis
    • Schuster W (1994) The highly edited orf2Q6 in Oenothera mitochondria may encode a component of a heme transporter involved in oytochrome c biogenesis. Plant Mol Biol 25: 33-42
    • (1994) Plant Mol Biol , vol.25 , pp. 33-42
    • Schuster, W.1
  • 39
    • 2942589051 scopus 로고    scopus 로고
    • Predotar: A tool for rapidly screening proteornes for N-terrninal targeting sequences
    • Small I, Peeters N, Legeai F, Lurin C (2004) Predotar: a tool for rapidly screening proteornes for N-terrninal targeting sequences. Proteomics 4: 1581-1590
    • (2004) Proteomics , vol.4 , pp. 1581-1590
    • Small, I.1    Peeters, N.2    Legeai, F.3    Lurin, C.4
  • 40
    • 0033965922 scopus 로고    scopus 로고
    • The PPR motif-a TPR-related motif prevalent in plant organellar proteins
    • Small ID, Peeters N (2000) The PPR motif-a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 25: 46-47
    • (2000) Trends Biochem Sci , vol.25 , pp. 46-47
    • Small, I.D.1    Peeters, N.2
  • 41
    • 2642512446 scopus 로고    scopus 로고
    • Genetics and genomks of chloroplast biogenesis: Maize as a model system
    • Stern DB, Hanson MR, Balkan A (2004) Genetics and genomks of chloroplast biogenesis: maize as a model system. Trends Plant Sci 9:293-301
    • (2004) Trends Plant Sci , vol.9 , pp. 293-301
    • Stern, D.B.1    Hanson, M.R.2    Balkan, A.3
  • 42
    • 0028985194 scopus 로고
    • A plant mitochondrial sequence transcribed in transgenic tobacco chloroplasts is not edited
    • Sutton CA, Zoubenko OV, Hanson MR, Maliga P (1995) A plant mitochondrial sequence transcribed in transgenic tobacco chloroplasts is not edited. Mol Cell Biol 15: 1377-1381
    • (1995) Mol Cell Biol , vol.15 , pp. 1377-1381
    • Sutton, C.A.1    Zoubenko, O.V.2    Hanson, M.R.3    Maliga, P.4
  • 43
    • 0346850864 scopus 로고    scopus 로고
    • In vitro RNA editing in pea mitochondria requires NTP or dNTP, suggesting involvement of an RNA helioase
    • Takenaka M, Brennicke A (2003) In vitro RNA editing in pea mitochondria requires NTP or dNTP, suggesting involvement of an RNA helioase. J Biol Chem 278: 47526-47533
    • (2003) J Biol Chem , vol.278 , pp. 47526-47533
    • Takenaka, M.1    Brennicke, A.2
  • 44
    • 3442882802 scopus 로고    scopus 로고
    • Complex cis-elenients determine an RNA editing site in pea mitochondria
    • Takenaka M, Neuwirt J, Brennicke A (2004) Complex cis-elenients determine an RNA editing site in pea mitochondria. Nuolek Acids Res 32: 4137-4144
    • (2004) Nuolek Acids Res , vol.32 , pp. 4137-4144
    • Takenaka, M.1    Neuwirt, J.2    Brennicke, A.3
  • 45
    • 0034821617 scopus 로고    scopus 로고
    • Comparative analysis of RNA editing sites in higher plant chloroplasts
    • Tsudzuki T, Wakasugi T, Sugiura M (2001) Comparative analysis of RNA editing sites in higher plant chloroplasts. J Mol Evol 53: 327-332
    • (2001) J Mol E , vol.53 , pp. 327-332
    • Tsudzuki, T.1    Wakasugi, T.2    Sugiura, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.