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By definition, the maximally localized Wannier functions are not suited to describe strongly delocalized bonds (ref 38). However, we believethat a relative comparison of the bond ionicity of the reaction intermediates and the products is useful for a qualitative understanding of their bonding.
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47
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84906358470
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These structural changes are clearly limited by the time scale of our simulation (a few picoseconds only). At the present we can perform an analysis of local parameters of the platinated complex, while longer scale molecular dynamics simulations are required to obtain converged global parameters.
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48
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note
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The final classical MD structures have a root-mean-square deviation of ∼1.4 Å with respect to the initial NMR structure.
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52
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84906372914
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note
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15 a simulation of a few picoseconds may already point out if relevant structural changes will occur upon binding of the drug. A decrease of the overall axis bend passing from A to C, although not relevant in absolute value, is an indication that, in contrast to cisplatin, these drugs may cause a release of the overall axis bend.
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