Sequence-selective interactions with RNA by CspB, CspC and CspE, members of the CspA family of Escherichia coli

Molecular Microbiology

Volumn 33, Issue 5, 1999, Pages 1004-1014

  Phadtare, Sangita ^a   Inouye, Masayori ^a  

^a RUTGERS ROBERT WOOD JOHNSON MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CHAPERONE; COLD SHOCK PROTEIN; MESSENGER RNA; SINGLE STRANDED DNA;

AMINO ACID SEQUENCE; ARTICLE; BINDING AFFINITY; CELL FUNCTION; CONSENSUS SEQUENCE; CONTROLLED STUDY; DNA SEQUENCE; ESCHERICHIA COLI; NONHUMAN; PRIORITY JOURNAL; PROTEIN RNA BINDING; PROTEIN SECONDARY STRUCTURE; TEMPERATURE; TRANSCRIPTION REGULATION;

ESCHERICHIA COLI;

EID: 0032858516     PISSN: 0950382X     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2958.1999.01541.x     Document Type: Article

References (40)

1. Aslanidis, C., Schmid, K., and Schmitt, R. (1989) Nucleotide sequences and operon structure of plasmid-borne genes mediating uptake and utilization of raffinose in Escherichia coli. J Bacteriol 171: 6753-6763.
2. Bae, W., Jones, P.G., and Inouye, M. (1997) CspA, the major cold shock protein of Escherichia coli, negatively regulates its own gene expression. J Bacteriol 179: 7081-7088.
3. Bae, W., Phadtare, S., Severinov, K., and Inouye, M. (1999) Characterization of Escherichia coli cspE, whose product negatively regulates transcription of cspA, the gene for the major cold shock protein. Mol Microbiol 31: 1429-1441.
4. Bouvet, P., Matsumoto, K., and Wolffe, A.P. (1995) Sequence-specific RNA recognition by the Xenopus Y-box proteins. J Biol Chem 270: 28297-28303.
5. Brandi, A., Pon, C.L., and Gualerzi, C.O. (1994) Interaction of the main cold shock protein CS7.4 (CspA) of Escherichia coli with the promoter region of hns. Biochimie 76: 1090-1098.
6. Chatterjee, S., Jiang, W., Emerson, S.D., and Inouye, M. (1993) The backbone structure of the major cold-shock protein CS7.4 of Escherichia coli in solution includes extensive β-sheet structure. J Biochem 114: 663-669.
7. Crowell, D.N., Reznikoff, W.S., and Raetz, C.R.H. (1987) Nucleotide sequence of the Escherichia coli gene for lipid A disaccharide synthase. J Bacteriol 169: 5727-5734.
8. 2δ complex from Escherichia coli ATP synthase. J Biol Chem 273: 8646-8651.
9. Etchegaray, J.P., Jones, P.G., and Inouye, M. (1996) Differential thermoregulation of two highly homologous cold-shock genes, cspA and cspB, of Escherichia coli. Genes Cells 1: 171-178.
10. Feng, W., Tejero, R., Zimmerman, D.E., Inouye, M., and Montelione, G.T. (1998) Solution NMR structure and backbone dynamics of the major cold-shock protein (CspA) from Escherichia coli: evidence for conformational dynamics in the single-stranded RNA-binding site. Biochemistry 37: 10881-10896.
11. Goldstein, J., Pollitt, N.S., and Inouye, M. (1990) Major cold shock protein of Escherichia coli. Proc Natl Acad Sci USA 87: 283-287.
12. Goss, T.J., Schweizer, H.P., and Datta, P. (1988). Molecular characterization of the tdc operon of Escherichia coli K-12. J Bacteriol 170: 5352-5359.
13. Graumann, P., and Marahiel, M.A. (1994) The major cold shock protein of Bacillus subtilis CspB binds with high affinity to the ATTGG-and CCAAT sequences in single stranded oligonucleotides. FEBS Lett 338: 157-160.
14. Graumann, P., and Marahiel, M.A. (1996) Some like it cold: response of microorganisms to cold shock. Arch Microbiol 166: 293-300.
15. Graumann, P.L., and Marahiel, M.A. (1998) A superfamily of proteins that contain the cold-shock domain. Trends Biochem Sci 23: 286-290.
16. Hillier, B.J., Rodriguez, H.M., and Gregoret, L.M. (1998) Coupling protein stability and protein function in Escherichia coli CspA. Folding Design 3: 87-93.
17. Jiang, W., Fang, L., and Inouye, M. (1996) The role of the 5'-end untranslated region of the mRNA for CspA, the major cold-shock protein of Escherichia coli, in cold-shock adaptation. J Bacteriol 178: 4919-4925.
18. Jiang, W., Hou, Y., and Inouye, M. (1997) CspA, the major cold-shock protein of Escherichia coli, is an RNA chaperons. J Biol Chem 272: 196-202.
19. Jones, P.G., Krah, R., Tafuri, S.R., and Wolffe, A.P. (1992) DNA gyrase, CS7.4, and the cold shock response in Escherichia coli. J Bacteriol 174: 5798-5802.
20. Kajita, Y., Nakayama, J., Aizawa, M., and Ishikawa, F. (1995) The UUAG-specific RNA binding protein, heterogeneous nuclear ribonucleoprotein D0. J Biol Chem 270: 22167-22175.
21. Kenan, D.J., Query, C.C., and Keene, J.D. (1991) RNA recognition: towards identifying determinants of specificity. Trends Biochem Sci 16: 214-220.
22. La Teana, A., Brandi, A., Falconi, M., Spurio, R., Pon, C.L., and Gualerzi, C.O. (1991) Identification of a cold shock transcriptional enhancer of the Escherichia coli gene encoding nucleoid protein H-NS. Proc Natl Acad Sci USA 88: 10907-10911.
23. Lee, S.J., Xie, A., Jiang, W., Etchegaray, J.P., Jones, P.G., and Inouye, M. (1994) Family of the major cold-shock protein, CspA (CS7.4), of Escherichia coli, whose members show a high sequence similarity with the eukaryotic Y-box binding proteins. Mol Microbiol 11: 833-839.
24. Maguire, M.E. (1992) MgtA and MgtB: prokaryotic P-type ATPases that mediate Mg2+ influx. J Bioenerg Biomembr 24: 319-328.
25. Matsumoto, K., Meric, F., and Wolffe, A.P. (1996) Translational repression dependent on the interaction of the Xenopus Y-box protein FRGY2 with mRNA. J Biol Chem 271: 22706-22712.
26. Nagel, R.J., Lancaster, A.M., and Zahler, A.M. (1998) Specific binding of an exonic splicing enhancer by the pre-mRNA splicing factor SRp55. RNA 4: 11-23.
27. Nakashima, K., Kanamaru, K., Mizuno, T., and Horikoshi, K. (1996) A novel member of the cspA family of genes that is induced by cold shock in Escherichia coli. J Bacteriol 178: 2994-2997.
28. Newkirk, K., Feng, W., Jiang, W., Tejero, R., Emerson, S.D., Inouye, M., et al. (1994) Solution NMR structure of the major cold-shock protein (CspA) from Escherichia coli. identification of a binding epitope for DNA. Proc Natl Acad Sci USA 91: 5114-5118.
29. Sato, N. (1995) A family of cold-regulated RNA-binding protein genes in the cyanobacterium Anabaena variabilis M3. Nucleic Acids Res 23: 2161-2167.
30. Scapin, G., Blanchard, J.S., and Sacchettini, J.C. (1995) Three-dimensional structure of Escherichia coli dihydrodipicolinate reductase. Biochemistry 34: 3502-3512.
31. Schindelin, H., Jiang, W., Inouye, M., and Heinemann, U. (1994) Crystal structure of CspA, the major cold shock protein of Escherichia coli. Proc Natl Acad Sci USA 91: 5119-5123.
32. Schroder, K., Graumann, P., Schnuchel, A., Holak, T.A., and Marahiel, M.A. (1995) Mutational analysis of the putative nucleic acid-binding surface of the cold-shock domain, CspB, revealed an essential role of aromatic and basic residues in binding of single-stranded DNA containing the Y-box motif. Mol Microbiol 16: 699-708.
33. Sommerville, J., and Ladomery, M. (1996) Masking of mRNA by Y-box proteins. FASEB J10: 435-443.
34. Tafuri, S.R., and Wolffe, A.P. (1992) DNA binding, multimerization, and transcription stimulation by the Xenopus Y box proteins in vitro. New Biol 4: 349-359.
35. Tsai, D.E., Harper, D.S., and Keene, J.D. (1991) U1-snRNP-A protein selects a ten nucleotide consensus sequence from a degenerate RNA pool presented in various structural contexts. Nucleic Acids Res 19: 4931-4936.
36. Tuerk, C., and Gold, L. (1990) Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science 249: 505-510.
37. Wang, N., Yamanaka, K., and Inouye, M. (1999) Cspl, the ninth member of the CspA family of Escherichia coli, is induced upon cold shock. J Bacteriol 181: 1603-1609.
38. Yamanaka, K., and Inouye, M. (1997) Growth-phase-dependent expression of cspD, encoding a member of the CspA family of Escherichia coli. J Bacteriol 179: 5126-5130.
39. Yamanaka, K., Mitani, T., Ogura, T., Niki, H., and Hiraga, S. (1994) Cloning, sequencing and characterization of multicopy suppressors of a mukB mutation in Escherichia coli. Mol Microbiol 13: 301-312.
40. Yamanaka, K., Fang, L., and Inouye, M. (1998) The CspA family in Escherichia coli: multiple gene duplication for stress adaptation. Mol Microbiol 27: 247-255.