REBASE - Restriction enzymes and DNA methyltransferases

Nucleic Acids Research

Volumn 33, Issue DATABASE ISS., 2005, Pages

  Roberts, Richard J ^a   Vincze, Tamas ^a   Posfai, Janos ^a   Macelis, Dana ^a  

^a NEW ENGLAND BIOLABS   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA METHYLTRANSFERASE; ENDONUCLEASE; RESTRICTION ENDONUCLEASE; DNA; TYPE II SITE SPECIFIC DEOXYRIBONUCLEASE;

ACCESS TO INFORMATION; ARCHAEBACTERIUM; ARTICLE; BACTERIAL GENOME; COMMERCIAL PHENOMENA; COMPUTER PROGRAM; CRYSTAL STRUCTURE; E-MAIL; ENZYME DEGRADATION; ENZYME MODIFICATION; ENZYME REPRESSION; GENE SEQUENCE; HUMAN; INTERNET; ISOSCHIZOMER; MOLECULAR RECOGNITION; NONHUMAN; PREDICTION; PRIORITY JOURNAL; PROTEIN METHYLATION; REBASE; SEQUENCE ANALYSIS; SEQUENCE DATABASE; BACTERIUM; DNA METHYLATION; ENZYME SPECIFICITY; GENBANK; PROTEIN DATABASE; PROTEIN MODIFICATION; PROTEIN RESTRICTION; REBASE DATABASE; SENSITIVITY ANALYSIS;

DATABASES, PROTEIN; DNA MODIFICATION METHYLASES; DNA RESTRICTION ENZYMES; GENOME, ARCHAEAL; GENOME, BACTERIAL; SUBSTRATE SPECIFICITY;

ARCHAEA; BACTERIA (MICROORGANISMS);

EID: 13444293333     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gki029     Document Type: Article

References (9)

1. Roberts,R.J., Vincze,T., Posfai,J. and Macelis,D. (2003) REBASE restriction enzymes and methyltransferases. Nucleic Acids Res. 31, 418-420.
2. Benson,D.A., Karsch-Mizrachi,I., Lipman,D.J., Ostell,J. and Wheeler,D.L. (2004) GenBank: update. Nucleic Acids Res., 32, D23-D26.
3. Roberts,R.J., Belfort,M., Bestor,T., Bhagwat,A.S., Bickle,T.A., Bitinaite,J., Blumenthal,R.M., Degtyarev,S.Kh., Dryden,D.T.F., Dybvig,K. et al. (2003) A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes. Nucleic Acids Res., 31, 1805-1812.
4. Boeckmann,B., Bairoch,A., Apweiler,R., Blatter,M.-C., Estreicher,A., Gasteiger,E., Martin,M.J., Michoud,K., O'Donovan,C., Phan,I. et al. (2003) The SWISS-PROT protein knowledge base and its supplement TrEMBL in 2003. Nucleic Acids Res., 31, 365-370.
5. Bourne,P.E., Addess,K.J., Bluhm,W.F., Chen,L., Deshpande,N., Feng,Z., Fleri,W., Green,R., Merino-Ott,J.C., Townsend-Merino,W. et al. (2004) The distribution and query systems of the RCSB Protein Data Bank. Nucleic Acids Res., 32, D223-D225.
6. Bateman,A., Coin,L., Durbin,R., Finn,R.D., Hollich,V., Griffiths-Jones,S., Khanna,A., Marshall,M., Moxon,S., Sonhammer,E.L.L. et al. (2004) The Pfam protein families database. Nucleic Acids Res., 32, D138-D141.
7. Vincze,T., Posfai,J. and Roberts,R.J. (2003) NEBcutter: a program to cleave DNA with restriction enzymes. Nucleic Acids Res., 31, 3688-3691.
8. Gingeras,T.R., Milazzo,J.P. and Roberts,R.J. (1978) A computer assisted method for the determination of restriction enzyme recognition sites. Nucleic Acids Res., 5, 4105-4127.
9. McGinnis,S. and Madden,T.L. (2004) BLAST: at the core of a powerful and diverse set of sequence analysis tools. Nucleic Acids Res., 31, W20-W25.