Analysis of interaction between DNA and Deinococcus radiodurans PprA protein by Atomic force microscopy

Biochimica et Biophysica Acta - Proteins and Proteomics

Volumn 1764, Issue 1, 2006, Pages 20-23

  Murakami, Masahiro ^a   Narumi, Issay ^b   Satoh, Katsuya ^b   Furukawa, Akira ^a   Hayata, Isamu ^a  

^a NATIONAL INSTITUTE OF RADIOLOGICAL SCIENCES   (Japan)

^b JAPAN ATOMIC ENERGY AGENCY   (Japan)

Author keywords

Atomic force microscopy; Deinococcus radiodurans; DNA repair; Radioresistant bacterium

Indexed keywords

BACTERIAL PROTEIN; PROTEIN PPRA; UNCLASSIFIED DRUG;

ARTICLE; ATOMIC FORCE MICROSCOPY; DEINOCOCCUS RADIODURANS; DNA REPAIR; GEL FILTRATION; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; MATHEMATICAL COMPUTING; MOLECULAR WEIGHT; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN DNA INTERACTION;

BACTERIAL PROTEINS; CHROMATOGRAPHY, HIGH PRESSURE LIQUID; DEINOCOCCUS; DNA REPAIR; DNA, BACTERIAL; DNA-BINDING PROTEINS; MACROMOLECULAR SUBSTANCES; MICROSCOPY, ATOMIC FORCE; MOLECULAR WEIGHT; PROTEIN BINDING;

BACTERIA (MICROORGANISMS); DEINOCOCCUS RADIODURANS;

EID: 33644846033     PISSN: 15709639     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbapap.2005.10.017     Document Type: Article

References (24)

1. I. Narumi, K. Sato, S. Cui, T. Funayama, S. Kitayama, and H. Watanabe PprA: a novel protein from Deinococcus radiodurans that stimulates DNA ligation Mol. Microbiol. 54 2004 278 285
2. H.G. Hansma, and J.H. Hoh Biomolecular imaging with the atomic force microscope Ann. Rev. Biophys. Biomol. Struct. 23 1994 115 139
3. R.B. Cary, S.R. Peterson, J. Wang, D.G. Bear, E.M. Bradbury, and D.J. Chen DNA looping by Ku and the DNA-dependent protein kinase Proc. Natl. Acad. Sci. U. S. A. 94 1997 4267 4272
4. D. Pang, S. Yoo, W.S. Dynan, M. Jung, and A. Dritschilo Ku proteins join DNA fragments as shown by atomic force microscopy Cancer Res. 57 1997 1412 1415
5. M. Yaneva, T. Kowalewski, and M.R. Lieber Interaction of DNA-dependent protein kinase with DNA and with Ku: biochemical and atomic-force microscopy studies EMBO J. 16 1997 5098 5112
6. M. de Jager, J. van Noot, D.C. van Gent, C. Dekker, R. Kanaar, and C. Wyman Human Rad50/Mre11 is a flexible complex that can tether DNA ends Mol. Cell 8 2001 1129 1135
7. G.C.M. Smith, R.B. Cary, N.D. Lakin, B.C. Hann, S.H. Teo, D.J. Chen, and S.P. Jackson Purification and DNA binding properties of the ataxia- telangiectasia gene product ATM Proc. Natl. Acad. Sci. U. S. A. 96 1999 11134 11139
8. J.R. Battista Against all odds: the survival strategies of Deinococcus radiodurans Ann. Rev. Microbiol. 51 1997 203 224
9. P.D. Gutman, P. Fuchs, L. Ouyang, and K.W. Minton Identification, sequencing, and targeted mutagenesis of a DNA polymerase gene required for the extreme radioresitance of Deinococcus radiodurans J. Bacteriol. 175 1993 3581 3590
10. K. Satoh, I. Narumi, M. Kikuchi, S. Kitayama, T. Yanagisawa, K. Yamamoto, and H. Watanabe Characterization of RecA424 and RecA670 proteins from Deinococcus radiodurans J. Biochem. 131 2002 121 129
11. J.R. Battista, A.M. Earl, and M.J. Park Why is Deinococcus radiodurans so resistant to ionizing radiation? Trends Mircrobiol. 7 1999 362 365
12. J.R. Battista Radiation resistance: the fragments that remain Curr. Biol. 10 2000 R204 R205
13. S. Levin-Zaidman, J. Englander, E. Shimoni, A.K. Sharma, K.W. Minton, and A. Minsky Ringlike structure of the Deinococcus radiodurans genome: a key to radioresistance? Science 299 2003 254 256
14. Y. Liu, J. Zhou, M.V. Omelchenko, A.S. Beliaev, A. Venkateswaran, J. Stair, L. Wu, D.K. Thompson, D. Xu, I.B. Rogozin, E.K. Gaidamakova, M. Zhai, K.S. Makarova, E.V. Koonin, and M.J. Daly Transcriptome dynamics of Deinococcus radiodurans recovering from ionizing radiation Proc. Natl. Acad. Sci. U. S. A. 100 2003 4191 4196
15. Y. Hua, I. Narumi, G. Gao, B. Tian, K. Satoh, S. Kitayama, and B. Shen PprI: a general switch responsible for extreme radioresistance of Deinococcus radiodurans Biochem. Biophys. Res. Commun. 306 2003 354 360
16. I. Narumi Unlocking radiation resistance mechanisms: still a long way to go Trends Microbiol. 11 2003 422 425
17. J. Englander, E. Klein, V. Brumfeld, A.K. Sharma, A.J. Doherty, and A. Minsky DNA toroids: framework for DNA repair in Deinococcus radiodurans and in germinating bacterial spores J. Bacteriol. 186 2004 5973 5977
18. M. Murakami, H. Hirokawa, and I. Hayata Analysis of radiation damage of DNA by atomic force microscopy in comparison with agarose gel electrophoresis studies J. Biochem. Biophys. Methods 44 2000 31 40
19. M. Murakami, M. Minamihisamatsu, K. Sato, and I. Hayata Structural analysis of heavy ion radiation-induced chromosome aberrations by atomic force microscopy J. Biochem. Biophys. Methods 48 2001 293 301
20. M. Murakami, R. Kanda, M. Minamihisamatsu, and I. Hayata Characterization of ionizing radiation-induced ring chromosomes by atomic force microscopy Anal. Biochem. 334 2004 251 256
21. J.R. Whitaker Determination of molecular weights of proteins by gel filtration on Sephadex Anal. Chem. 35 1963 1950 1953
22. S.W. Schneider, J. Lärmer, R.M. Henderson, and H. Oberleithner Molecular weights of individual proteins correlate with molecular volumes measured by atomic force microscopy Pflügers Arch. 435 1998 362 367
23. L.I. Pietrasanta, D. Thrower, W. Hsieh, S. Rao, O. Stemmann, J. Lechner, J. Carbon, and H. Hansma Probing the Saccharomyces cerevisiae centromeric DNA (CEN DNA)-binding factor 3 (CBF3) kinetochore complex by using atomic force microscopy Proc. Natl. Acad. Sci. U. S. A. 96 1999 3757 3762
24. D. Ristic, M. Modesti, R. Kanaar, and C. Wyman Rad52 and Ku bind to different DNA structures produced early in double-strand break repair Nucleic Acids Res. 31 2003 5229 5237