The m-xylene biodegradation capacity of Pseudomonas putida mt-2 is submitted to adaptation to abiotic stresses: Evidence from expression profiling of xyl genes

Environmental Microbiology

Volumn 8, Issue 4, 2006, Pages 591-602

  Velázquez, Francisco ^a   De Lorenzo, Víctor ^a   Valls, Marc ^a  

^a CENTRO NACIONAL DE BIOTECNOLOGÍA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

3 XYLENE; 3-XYLENE; BACTERIAL PROTEIN; XYLENE;

ADAPTATION; ARTICLE; BIOREMEDIATION; DNA MICROARRAY; DRUG EFFECT; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETIC TRANSCRIPTION; GENETICS; GROWTH, DEVELOPMENT AND AGING; OXIDATIVE STRESS; POLLUTANT; PSEUDOMONAS PUTIDA;

ADAPTATION, PHYSIOLOGICAL; BACTERIAL PROTEINS; BIODEGRADATION, ENVIRONMENTAL; ENVIRONMENTAL POLLUTANTS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, BACTERIAL; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; OXIDATIVE STRESS; PSEUDOMONAS PUTIDA; TRANSCRIPTION, GENETIC; XYLENES;

PSEUDOMONAS PUTIDA;

EID: 33644837639     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/j.1462-2920.2005.00936.x     Document Type: Article

References (37)

1. Assinder SJ. Williams PA. 1990 The TOL plasmids: determinants of the catabolism of toluene and the xylenes Adv Microb Physiol 31 1 69
2. Backman A. Maraha N. Jansson JK. 2004 Impact of temperature on the physiological status of a potential bioremediation inoculant, Arthrobacter chlorophenolicus A6 Appl Environ Microbiol 70 2952 2958
3. Cases I. de Lorenzo V. 2005 Promoters in the environment: transcriptional regulation in its natural context Nat Rev Microbiol 3 105 118
4. Cases I. de Lorenzo V. Ouzounis CA. 2003a Transcription regulation and environmental adaptation in bacteria Trends Microbiol 11 248 253
5. Cases I. Ussery D. de Lorenzo V. 2003b The sigma 54 regulon (sigmulon) of Pseudomonas putida Environ Microbiol 5 1281 1293
6. Dinamarca MA. Ruiz-Manzano A. Rojo F. 2002 Inactivation of cytochrome o ubiquinol oxidase relieves catabolic repression of the Pseudomonas putida GPo1 alkane degradation pathway J Bacteriol 184 3785 3793
7. Duche O. Tremoulet F. Glaser P. Labadie J. 2002 Salt stress proteins induced in Listeria monocytogenes Appl Environ Microbiol 68 1491 1498
8. Duetz WA. Marques S. de Jong C. Ramos JL. van Andel JG. 1994 Inducibility of the TOL catabolic pathway in Pseudomonas putida (pWW0) growing on succinate in continuous culture: evidence of carbon catabolite repression control J Bacteriol 176 2354 2361
9. Duetz WA. Marques S. Wind B. Ramos JL. van Andel JG. 1996 Catabolite repression of the toluene degradation pathway in Pseudomonas putida harboring pWW0 under various conditions of nutrient limitation in chemostat culture Appl Environ Microbiol 62 601 606
10. Esteve-Nunez A. Lucchesi G. Philipp B. Schink B. Ramos JL. 2000 Respiration of 2,4,6-trinitrotoluene by Pseudomonas sp. strain JLR11 J Bacteriol 182 1352 1355
11. Fernández S. de Lorenzo V. Perez-Martin J. 1995 Activation of the transcriptional regulator XylR of Pseudomonas putida by release of repression between functional domains Mol Microbiol 16 205 213
12. Garmendia J. de Lorenzo V. 2000 The role of the interdomain B linker in the activation of the XylR protein of Pseudomonas putida Mol Microbiol 38 401 410
13. Greated A. Lambertsen L. Williams PA. Thomas CM. 2002 Complete sequence of the IncP-9 TOL plasmid pWW0 from Pseudomonas putida Environ Microbiol 4 856 871
14. Holtel A. Marques S. Mohler I. Jakubzik U. Timmis KN. 1994 Carbon source-dependent inhibition of xyl operon expression of the Pseudomonas putida TOL plasmid J Bacteriol 176 1773 1776
15. Jishage M. Kvint K. Shingler V. Nystrom T. 2002 Regulation of sigma factor competition by the alarmone ppGpp Genes Dev 16 1260 1270
16. Khil PP. Camerini-Otero RD. 2002 Over 1000 genes are involved in the DNA damage response of Escherichia coli Mol Microbiol 44 89 105
17. Kim YC. Miller CD. Anderson AJ. 1999 Transcriptional regulation by iron of genes encoding iron- and manganese-superoxide dismutases from Pseudomonas putida Gene 239 129 135
18. Laurie AD. Bernardo LM. Sze CC. Skarfstad E. Szalewska-Palasz A. Nystrom T. Shingler V. 2003 The role of the alarmone (p)ppGpp in sigma N competition for core RNA polymerase J Biol Chem 278 1494 1503
19. Little RH. Cheesman MR. Thomson AJ. Greenwood C. Watmough NJ. 1996 Cytochrome bo from Escherichia coli: binding of azide to CuB Biochemistry 35 13780 13787
20. Lovley DR. 2003 Cleaning up with genomics: applying molecular biology to bioremediation Nat Rev Microbiol 1 35 44
21. MacNaughton SJ. Stephen JR. Venosa AD. Davis GA. Chang Y-J. White DC. 1999 Microbial population changes during bioremediation of an experimental oil spill Appl Environ Microbiol 65 3566 3574
22. Medina-Bellver JI. Marin P. Delgado A. Rodriguez-Sanchez A. Reyes E. Ramos JL. Marques S. 2005 Evidence for in situ crude oil biodegradation after the Prestige oil spill Environ Microbiol 7 773 779
23. Miller JH. 1972 Experiments in Molecular Genetics Cold Spring Harbor, NY Cold Spring Harbor Laboratory Press.
24. Miller C. Thomsen LE. Gaggero C. Mosseri R. Ingmer H. Cohen SN. 2004 SOS response induction by beta-lactams and bacterial defense against antibiotic lethality Science 305 1629 1631
25. Moreno-Vivian C. Cabello P. Martinez-Luque M. Blasco R. Castillo F. 1999 Prokaryotic nitrate reduction: molecular properties and functional distinction among bacterial nitrate reductases J Bacteriol 181 6573 6584
26. Nelson KE. Weinel C. Paulsen IT. Dodson RJ. Hilbert H. Martins dos Santos VA. et al. 2002 Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440 Environ Microbiol 4 799 808
27. Petruschka L. Burchhardt G. Muller C. Weihe C. Herrmann H. 2001 The cyo operon of Pseudomonas putida is involved in carbon catabolite repression of phenol degradation Mol Genet Genomics 266 199 206
28. Pomposiello PJ. Bennik MH. Demple B. 2001 Genome-wide transcriptional profiling of the Escherichia coli responses to superoxide stress and sodium salicylate J Bacteriol 183 3890 3902
29. Quillardet P. Rouffaud MA. Bouige P. 2003 DNA array analysis of gene expression in response to UV irradiation in Escherichia coli Res Microbiol 154 559 572
30. Ramos JL. Marques S. Timmis KN. 1997 Transcriptional control of the Pseudomonas TOL plasmid catabolic operons is achieved through an interplay of host factors and plasmid-encoded regulators Annu Rev Microbiol 51 341 373
31. Ramos JL. Gallegos MT. Marques S. Ramos-Gonzalez MI. Espinosa-Urgel M. Segura A. 2001 Responses of Gram-negative bacteria to certain environmental stressors Curr Opin Microbiol 4 166 171
32. Ramos JL. Duque E. Gallegos MT. Godoy P. Ramos-Gonzalez MI. Rojas A. et al. 2002 Mechanisms of solvent tolerance in Gram-negative bacteria Annu Rev Microbiol 56 743 768
33. Stancik LM. Stancik DM. Schmidt B. Barnhart DM. Yoncheva YN. Slonczewski JL. 2002 pH-dependent expression of periplasmic proteins and amino acid catabolism in Escherichia coli J Bacteriol 184 4246 4258
34. Velázquez F. di Bartolo I. de Lorenzo V. 2004 Genetic evidence that catabolites of the Entner-Doudoroff pathway signal C-source repression of the sigma 54 Pu promoter of Pseudomonas putida J Bacteriol 186 8267 8275
35. Velázquez F. Parro V. de Lorenzo V. 2005 Inferring the genetic network of m-xylene metabolism through expression profiling of the xyl genes of Pseudomonas putida mt-2 Mol Microbiol 57 1557 1569
36. Weinel C. Nelson KE. Tummler B. 2002 Global features of the Pseudomonas putida KT2440 genome sequence Environ Microbiol 4 809 818
37. Xie Y. Chou L-S. Cutler A. Weimer B. 2004 DNA macroarray profiling of Lactococcus lactis subsp. lactis IL1403 gene expression during environmental stresses Appl Environ Microbiol 70 6738 6747