-
1
-
-
0010456859
-
Crystal structure of the ATPase domain of translation initiation factor 4A from Saccharomyces cerevisiae-the prototype of the DEAD box protein family
-
Benz J, Trachsel H, Baumann U (1999) Crystal structure of the ATPase domain of translation initiation factor 4A from Saccharomyces cerevisiae-the prototype of the DEAD box protein family. Struct Fold Des 7: 671-679
-
(1999)
Struct Fold Des
, vol.7
, pp. 671-679
-
-
Benz, J.1
Trachsel, H.2
Baumann, U.3
-
2
-
-
0036568353
-
Classification of proteins based on the properties of the ligand-binding site: The case of adenine-binding proteins
-
Cappello V, Tramontano A, Koch U (2002) Classification of proteins based on the properties of the ligand-binding site: the case of adenine-binding proteins. Proteins 47: 106-115
-
(2002)
Proteins
, vol.47
, pp. 106-115
-
-
Cappello, V.1
Tramontano, A.2
Koch, U.3
-
3
-
-
0347623200
-
Crystal structure of the BstDEAD N-terminal domain: A novel DEAD protein from Bacillus stearothermophilus
-
Carmel AB, Matthews BW (2004) Crystal structure of the BstDEAD N-terminal domain: a novel DEAD protein from Bacillus stearothermophilus. RNA 10: 66-74
-
(2004)
RNA
, vol.10
, pp. 66-74
-
-
Carmel, A.B.1
Matthews, B.W.2
-
4
-
-
0034700086
-
Crystal structure of yeast initiation factor 4A, a DEAD-box RNA helicase
-
Caruthers JM, Johnson ER, McKay DB (2000) Crystal structure of yeast initiation factor 4A, a DEAD-box RNA helicase. Proc Natl Acad Sci USA 97: 13080-13085
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 13080-13085
-
-
Caruthers, J.M.1
Johnson, E.R.2
McKay, D.B.3
-
6
-
-
0141754010
-
Role of the gamma-phosphate of ATP in triggering protein folding by GroEL-GroES: Function, structure and energetics
-
Chaudhry C, Farr GW, Todd MJ, Rye HS, Brunger AT, Adams PD, Horwich AL, Sigler PB (2003) Role of the gamma-phosphate of ATP in triggering protein folding by GroEL-GroES: function, structure and energetics. EMBO J 22: 4877-4887
-
(2003)
EMBO J
, vol.22
, pp. 4877-4887
-
-
Chaudhry, C.1
Farr, G.W.2
Todd, M.J.3
Rye, H.S.4
Brunger, A.T.5
Adams, P.D.6
Horwich, A.L.7
Sigler, P.B.8
-
7
-
-
0030614360
-
Requirement of the DEAD-box protein Ded1p for messenger RNA translation
-
Chuang RY, Weaver PL, Liu Z, Chang TH (1997) Requirement of the DEAD-box protein Ded1p for messenger RNA translation. Science 275: 1468-1471
-
(1997)
Science
, vol.275
, pp. 1468-1471
-
-
Chuang, R.Y.1
Weaver, P.L.2
Liu, Z.3
Chang, T.H.4
-
8
-
-
0031000205
-
The p20 and Ded1 proteins have antagonistic roles in eIF4E-dependent translation in Saccharomyces cerevisiae
-
de la Cruz J, Iost I, Kressler D, Linder P (1997) The p20 and Ded1 proteins have antagonistic roles in eIF4E-dependent translation in Saccharomyces cerevisiae. Proc Natl Acad Sci USA 94: 5201-5206
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 5201-5206
-
-
De La Cruz, J.1
Iost, I.2
Kressler, D.3
Linder, P.4
-
9
-
-
0027182114
-
Helicases: Amino acid sequence comparisons and structure-function relationships
-
Gorbalenya AE, Koonin EV (1993) Helicases: amino acid sequence comparisons and structure-function relationships. Curr Opin Struct Biol 3: 419-429
-
(1993)
Curr Opin Struct Biol
, vol.3
, pp. 419-429
-
-
Gorbalenya, A.E.1
Koonin, E.V.2
-
10
-
-
0037195926
-
The RNA helicase DbpA exhibits a markedly different conformation in the ADP-bound state when compared with the ATP- or RNA-bound states
-
Henn A, Shi SP, Zarivach R, Ben-Zeev E, Sagi I (2002) The RNA helicase DbpA exhibits a markedly different conformation in the ADP-bound state when compared with the ATP- or RNA-bound states. J Biol Chem 277: 46559-46565
-
(2002)
J Biol Chem
, vol.277
, pp. 46559-46565
-
-
Henn, A.1
Shi, S.P.2
Zarivach, R.3
Ben-Zeev, E.4
Sagi, I.5
-
11
-
-
0033580840
-
Ded1p, a DEAD-box protein required for translation initiation in Saccharomyces cerevisiae, is an RNA helicase
-
Iost I, Dreyfus M, Linder P (1999) Ded1p, a DEAD-box protein required for translation initiation in Saccharomyces cerevisiae, is an RNA helicase. J Biol Chem 274: 17677-17683
-
(1999)
J Biol Chem
, vol.274
, pp. 17677-17683
-
-
Iost, I.1
Dreyfus, M.2
Linder, P.3
-
12
-
-
0142011067
-
Evolution and classification of P-loop kinases and related proteins
-
Leipe DD, Koonin EV, Aravind L (2003) Evolution and classification of P-loop kinases and related proteins. J Mol Biol 333: 781-815
-
(2003)
J Mol Biol
, vol.333
, pp. 781-815
-
-
Leipe, D.D.1
Koonin, E.V.2
Aravind, L.3
-
13
-
-
0024967639
-
Birth of the D-E-A-D box
-
Linder P, Lasko PF, Ashburner M, Leroy P, Nielsen PJ, Nishi K, Schnier J, Slonimski PP (1989) Birth of the D-E-A-D box. Nature 337: 121-122
-
(1989)
Nature
, vol.337
, pp. 121-122
-
-
Linder, P.1
Lasko, P.F.2
Ashburner, M.3
Leroy, P.4
Nielsen, P.J.5
Nishi, K.6
Schnier, J.7
Slonimski, P.P.8
-
14
-
-
0029893874
-
Mechanisms of helicase-catalyzed DNA unwinding
-
Lohman TM, Bjornson KP (1996) Mechanisms of helicase-catalyzed DNA unwinding. Annu Rev Biochem 65: 169-214
-
(1996)
Annu Rev Biochem
, vol.65
, pp. 169-214
-
-
Lohman, T.M.1
Bjornson, K.P.2
-
15
-
-
0032562239
-
The DEAD box protein eIF4A. 1. A minimal kinetic and thermodynamic framework reveals coupled binding of RNA and nucleotide
-
Lorsch JR, Herschlag D (1998a) The DEAD box protein eIF4A. 1. A minimal kinetic and thermodynamic framework reveals coupled binding of RNA and nucleotide. Biochemistry 37: 2180-2193
-
(1998)
Biochemistry
, vol.37
, pp. 2180-2193
-
-
Lorsch, J.R.1
Herschlag, D.2
-
16
-
-
0032562221
-
The DEAD box protein eIF4A. 2. A cycle of nucleotide and RNA-dependent conformational changes
-
Lorsch JR, Herschlag D (1998b) The DEAD box protein eIF4A. 2. A cycle of nucleotide and RNA-dependent conformational changes. Biochemistry 37: 2194-2206
-
(1998)
Biochemistry
, vol.37
, pp. 2194-2206
-
-
Lorsch, J.R.1
Herschlag, D.2
-
17
-
-
0030297640
-
Protein recognition of adenylate: An example of a fuzzy recognition template
-
Moodie SL, Mitchell JB, Thornton JM (1996) Protein recognition of adenylate: an example of a fuzzy recognition template. J Mol Biol 263: 486-500
-
(1996)
J Mol Biol
, vol.263
, pp. 486-500
-
-
Moodie, S.L.1
Mitchell, J.B.2
Thornton, J.M.3
-
19
-
-
0031862793
-
Different types of interactions involving cysteine sulfhydryl group in proteins
-
Pal D, Chakrabarti P (1998) Different types of interactions involving cysteine sulfhydryl group in proteins. J Biomol Struct Dyn 15: 1059-1072
-
(1998)
J Biomol Struct Dyn
, vol.15
, pp. 1059-1072
-
-
Pal, D.1
Chakrabarti, P.2
-
21
-
-
0031686310
-
T7 RNA polymerase produces 5′ end heterogeneity during in vitro transcription from certain templates
-
Pleiss JA, Derrick ML, Uhlenbeck OC (1998) T7 RNA polymerase produces 5′ end heterogeneity during in vitro transcription from certain templates. RNA 4: 1313-1317
-
(1998)
RNA
, vol.4
, pp. 1313-1317
-
-
Pleiss, J.A.1
Derrick, M.L.2
Uhlenbeck, O.C.3
-
22
-
-
0037133527
-
Cooperative binding of ATP and RNA substrates to the DEAD/H protein DbpA
-
Polach KJ, Uhlenbeck OC (2002) Cooperative binding of ATP and RNA substrates to the DEAD/H protein DbpA. Biochemistry 41: 3693-3702
-
(2002)
Biochemistry
, vol.41
, pp. 3693-3702
-
-
Polach, K.J.1
Uhlenbeck, O.C.2
-
23
-
-
0033214564
-
Interaction of the Escherichia coli DEAD box protein DbpA with 23 S ribosomal RNA
-
Pugh GE, Nicol SM, Fuller-Pace FV (1999) Interaction of the Escherichia coli DEAD box protein DbpA with 23 S ribosomal RNA. J Mol Biol 292: 771-778
-
(1999)
J Mol Biol
, vol.292
, pp. 771-778
-
-
Pugh, G.E.1
Nicol, S.M.2
Fuller-Pace, F.V.3
-
24
-
-
1542344429
-
DEAD-box proteins: The driving forces behind RNA metabolism
-
Rocak S, Linder P (2004) DEAD-box proteins: the driving forces behind RNA metabolism. Nat Rev Mol Cell Biol 5: 232-241
-
(2004)
Nat Rev Mol Cell Biol
, vol.5
, pp. 232-241
-
-
Rocak, S.1
Linder, P.2
-
25
-
-
0035918241
-
Further characterization of the helicase activity of eIF4A. Substrate specificity
-
Rogers Jr GW, Lima WF, Merrick WC (2001) Further characterization of the helicase activity of eIF4A. Substrate specificity. J Biol Chem 276: 12598-12608
-
(2001)
J Biol Chem
, vol.276
, pp. 12598-12608
-
-
Rogers Jr., G.W.1
Lima, W.F.2
Merrick, W.C.3
-
26
-
-
0028300741
-
Combining evolutionary information and neural networks to predict protein secondary structure
-
Rost B, Sander C (1994) Combining evolutionary information and neural networks to predict protein secondary structure. Proteins 19: 55-72
-
(1994)
Proteins
, vol.19
, pp. 55-72
-
-
Rost, B.1
Sander, C.2
-
27
-
-
0032539693
-
A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics
-
SantaLucia Jr J (1998) A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. Proc Natl Acad Sci USA 95: 1460-1465
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 1460-1465
-
-
SantaLucia Jr., J.1
-
28
-
-
0141430073
-
DExD/H-box proteins and their partners: Helping RNA helicases unwind
-
Silverman E, Edwalds-Gilbert G, Lin RJ (2003) DExD/H-box proteins and their partners: helping RNA helicases unwind. Gene 312: 1-16
-
(2003)
Gene
, vol.312
, pp. 1-16
-
-
Silverman, E.1
Edwalds-Gilbert, G.2
Lin, R.J.3
-
29
-
-
0029914905
-
Active site comparisons highlight structural similarities between myosin and other P-loop proteins
-
Smith CA, Rayment I (1996) Active site comparisons highlight structural similarities between myosin and other P-loop proteins. Biophys J 70: 1590-1602
-
(1996)
Biophys J
, vol.70
, pp. 1590-1602
-
-
Smith, C.A.1
Rayment, I.2
-
31
-
-
0032489021
-
Mechanical devices of the spliceosome: Motors, clocks, springs, and things
-
Staley JP, Guthrie C (1998) Mechanical devices of the spliceosome: motors, clocks, springs, and things. Cell 92: 315-326
-
(1998)
Cell
, vol.92
, pp. 315-326
-
-
Staley, J.P.1
Guthrie, C.2
-
32
-
-
0035852638
-
Crystal structure of a DEAD box protein from the hyperthermophile Methanococcus jannaschii
-
Story RM, Li H, Abelson JN (2001) Crystal structure of a DEAD box protein from the hyperthermophile Methanococcus jannaschii. Proc Natl Acad Sci USA 98: 1465-1470
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 1465-1470
-
-
Story, R.M.1
Li, H.2
Abelson, J.N.3
-
33
-
-
0029134549
-
Thermodynamic parameters to predict stability of RNA/DNA hybrid duplexes
-
Sugimoto N, Nakano S, Katoh M, Matsumura A, Nakamuta H, Ohmichi T, Yoneyama M, Sasaki M (1995) Thermodynamic parameters to predict stability of RNA/DNA hybrid duplexes. Biochemistry 34: 11211-11216
-
(1995)
Biochemistry
, vol.34
, pp. 11211-11216
-
-
Sugimoto, N.1
Nakano, S.2
Katoh, M.3
Matsumura, A.4
Nakamuta, H.5
Ohmichi, T.6
Yoneyama, M.7
Sasaki, M.8
-
34
-
-
0043199343
-
The newly identified Q motif of DEAD box helicases is involved in adenine recognition
-
Tanner NK (2003) The newly identified Q motif of DEAD box helicases is involved in adenine recognition. Cell Cycle 2: 18-19
-
(2003)
Cell Cycle
, vol.2
, pp. 18-19
-
-
Tanner, N.K.1
-
35
-
-
0037252143
-
The Q motif: A newly identified motif in DEAD box helicases may regulate ATP binding and hydrolysis
-
Tanner NK, Cordin O, Banroques J, Doere M, Linder P (2003) The Q motif: a newly identified motif in DEAD box helicases may regulate ATP binding and hydrolysis. Mol Cell 11: 127-138
-
(2003)
Mol Cell
, vol.11
, pp. 127-138
-
-
Tanner, N.K.1
Cordin, O.2
Banroques, J.3
Doere, M.4
Linder, P.5
-
36
-
-
0034857262
-
DExD/H box RNA helicases: From generic motors to specific dissociation functions
-
Tanner NK, Linder P (2001) DExD/H box RNA helicases: from generic motors to specific dissociation functions. Mol Cell 8: 251-262
-
(2001)
Mol Cell
, vol.8
, pp. 251-262
-
-
Tanner, N.K.1
Linder, P.2
-
38
-
-
0030267349
-
Switches, latches, and amplifiers: Common themes of G proteins and molecular motors
-
Vale RD (1996) Switches, latches, and amplifiers: common themes of G proteins and molecular motors. J Cell Biol 135: 291-302
-
(1996)
J Cell Biol
, vol.135
, pp. 291-302
-
-
Vale, R.D.1
-
39
-
-
0343415156
-
The way things move: Looking under the hood of molecular motor proteins
-
Vale RD, Milligan RA (2000) The way things move: looking under the hood of molecular motor proteins. Science 288: 88-95
-
(2000)
Science
, vol.288
, pp. 88-95
-
-
Vale, R.D.1
Milligan, R.A.2
-
40
-
-
0001607723
-
Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold
-
Walker JE, Saraste M, Runswick MJ, Gay NJ (1982) Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold. EMBO J 1: 945-951
-
(1982)
EMBO J
, vol.1
, pp. 945-951
-
-
Walker, J.E.1
Saraste, M.2
Runswick, M.J.3
Gay, N.J.4
|