-
1
-
-
0033972854
-
Genetic variation: Molecular mechanisms and impact on microbial evolution
-
Arber, W. (2000) Genetic variation: molecular mechanisms and impact on microbial evolution. FEMS Microbiol. Rev., 24, 1-7.
-
(2000)
FEMS Microbiol. Rev
, vol.24
, pp. 1-7
-
-
Arber, W.1
-
2
-
-
0033779496
-
New functions from old scaffolds: How nature reengineers enzymes for new functions
-
Babbitt, P.C. and Gerlt, J.A. (2000) New functions from old scaffolds: how nature reengineers enzymes for new functions. Adv. Protein Chem., 55, 1-28.
-
(2000)
Adv. Protein Chem
, vol.55
, pp. 1-28
-
-
Babbitt, P.C.1
Gerlt, J.A.2
-
3
-
-
0032473571
-
Structural basis for MutH activation in E.coli mismatch repair and relationship of MutH to restriction endonucleases
-
Ban, C. and Yang, W. (1998) Structural basis for MutH activation in E.coli mismatch repair and relationship of MutH to restriction endonucleases. EMBO J., 17, 1526-1534.
-
(1998)
EMBO J
, vol.17
, pp. 1526-1534
-
-
Ban, C.1
Yang, W.2
-
4
-
-
0030995661
-
Nucleotide-dependent complex formation between the Escherichia coli chaperonins GroEL and GroES studied under equilibrium conditions
-
Behlke, J., Ristau, O. and Schonfeld, H.J. (1997) Nucleotide-dependent complex formation between the Escherichia coli chaperonins GroEL and GroES studied under equilibrium conditions. Biochemistry, 36, 5149-5156.
-
(1997)
Biochemistry
, vol.36
, pp. 5149-5156
-
-
Behlke, J.1
Ristau, O.2
Schonfeld, H.J.3
-
5
-
-
0027324744
-
Biology of DNA restriction
-
Bickle, T.A. and Krüger, D.H. (1993) Biology of DNA restriction. Microbiol. Rev., 57, 434-450.
-
(1993)
Microbiol. Rev
, vol.57
, pp. 434-450
-
-
Bickle, T.A.1
Krüger, D.H.2
-
6
-
-
0032167717
-
FokI dimerization is required for DNA cleavage
-
Bitinaite, J., Wah, D.A., Aggarwal, A.K. and Schildkraut, I. (1998) FokI dimerization is required for DNA cleavage. Proc. Natl Acad. Sci. USA, 95, 10570-10575.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 10570-10575
-
-
Bitinaite, J.1
Wah, D.A.2
Aggarwal, A.K.3
Schildkraut, I.4
-
7
-
-
0033933471
-
Phylogeny of the restriction endonuclease-like superfamily inferred from comparison of protein structures
-
Bujnicki, J.M. (2000) Phylogeny of the restriction endonuclease-like superfamily inferred from comparison of protein structures. J. Mol. Evol., 50, 39-44.
-
(2000)
J. Mol. Evol
, vol.50
, pp. 39-44
-
-
Bujnicki, J.M.1
-
8
-
-
0032584245
-
The domain organization of NaeI endonuclease: Separation of binding and catalysis
-
Colandene, J.D. and Topal, M.D. (1998) The domain organization of NaeI endonuclease: separation of binding and catalysis. Proc. Natl Acad. Sci. USA, 95, 3531-3536.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 3531-3536
-
-
Colandene, J.D.1
Topal, M.D.2
-
9
-
-
0024811101
-
DNA and spermidine provide a switch mechanism to regulate the activity of restriction enzyme NaeI
-
Conrad, M. and Topal, M.D. (1989) DNA and spermidine provide a switch mechanism to regulate the activity of restriction enzyme NaeI. Proc. Natl Acad. Sci. USA, 86, 9707-9711.
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 9707-9711
-
-
Conrad, M.1
Topal, M.D.2
-
10
-
-
0034669334
-
Hjc resolvase is a distantly related member of the type II restriction endonuclease family
-
Daiyasu, H., Komori, K., Sakae, S., Ishino, Y. and Toh, H. (2000) Hjc resolvase is a distantly related member of the type II restriction endonuclease family. Nucleic Acids Res., 28, 4540-4543.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 4540-4543
-
-
Daiyasu, H.1
Komori, K.2
Sakae, S.3
Ishino, Y.4
Toh, H.5
-
11
-
-
0026705040
-
Interaction of EcoRII endonuclease with DNA substrates containing single recognition sites
-
Gabbara, S. and Bhagwat, A.S. (1992) Interaction of EcoRII endonuclease with DNA substrates containing single recognition sites. J. Biol. Chem., 267, 18623-18630.
-
(1992)
J. Biol. Chem
, vol.267
, pp. 18623-18630
-
-
Gabbara, S.1
Bhagwat, A.S.2
-
12
-
-
0037082418
-
Crystal structure of the Bse634I restriction endonuclease: Comparison of two enzymes recognizing the same DNA sequence
-
Grazulis, S. et al. (2002) Crystal structure of the Bse634I restriction endonuclease: comparison of two enzymes recognizing the same DNA sequence. Nucleic Acids Res., 30, 876-885.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 876-885
-
-
Grazulis, S.1
-
13
-
-
0035173848
-
Crystal structure of the Holliday junction resolving enzyme T7 endonuclease I
-
Hadden, J.M., Convery, M.A., Declais, A.C., Lilley, D.M. and Phillips, S.E. (2001) Crystal structure of the Holliday junction resolving enzyme T7 endonuclease I. Nat. Struct. Biol., 8, 62-67.
-
(2001)
Nat. Struct. Biol
, vol.8
, pp. 62-67
-
-
Hadden, J.M.1
Convery, M.A.2
Declais, A.C.3
Lilley, D.M.4
Phillips, S.E.5
-
14
-
-
0033634859
-
Unexpected structural diversity in DNA recombination: The restriction endonuclease connection
-
Hickman, A.B., Li, Y., Mathew, S.V., May, E.W., Craig, N.L. and Dyda, F. (2000) Unexpected structural diversity in DNA recombination: the restriction endonuclease connection. Mol. Cell, 5, 1025-1034.
-
(2000)
Mol. Cell
, vol.5
, pp. 1025-1034
-
-
Hickman, A.B.1
Li, Y.2
Mathew, S.V.3
May, E.W.4
Craig, N.L.5
Dyda, F.6
-
15
-
-
0036143789
-
Sequence selectivity and degeneracy of a restriction endonuclease mediated by DNA intercalation
-
Horton, N.C., Dorner, L.F. and Perona, J.J. (2002) Sequence selectivity and degeneracy of a restriction endonuclease mediated by DNA intercalation. Nat. Struct. Biol., 9, 42-47.
-
(2002)
Nat. Struct. Biol
, vol.9
, pp. 42-47
-
-
Horton, N.C.1
Dorner, L.F.2
Perona, J.J.3
-
16
-
-
0034660061
-
Crystal structure of NaeI-an evolutionary bridge between DNA endonuclease and topoisomerase
-
Huai, Q., Colandene, J.D., Chen, Y., Luo, F., Zhao, Y., Topal, M.D. and Ke, H. (2000) Crystal structure of NaeI-an evolutionary bridge between DNA endonuclease and topoisomerase. EMBO J., 19, 3110-3118.
-
(2000)
EMBO J
, vol.19
, pp. 3110-3118
-
-
Huai, Q.1
Colandene, J.D.2
Chen, Y.3
Luo, F.4
Zhao, Y.5
Topal, M.D.6
Ke, H.7
-
17
-
-
0034885432
-
Structure of NaeI-DNA complex reveals dual-mode DNA recognition and complete dimer rearrangement
-
Huai, Q., Colandene, J.D., Topal, M.D. and Ke, H. (2001) Structure of NaeI-DNA complex reveals dual-mode DNA recognition and complete dimer rearrangement. Nat. Struct. Biol., 8, 665-669.
-
(2001)
Nat. Struct. Biol
, vol.8
, pp. 665-669
-
-
Huai, Q.1
Colandene, J.D.2
Topal, M.D.3
Ke, H.4
-
18
-
-
0028968950
-
DNA topoisomerase and recombinase activities in NaeI restriction endonuclease
-
Jo, K. and Topal, M.D. (1995) DNA topoisomerase and recombinase activities in NaeI restriction endonuclease. Science 267, 1817-1820.
-
(1995)
Science
, vol.267
, pp. 1817-1820
-
-
Jo, K.1
Topal, M.D.2
-
19
-
-
0035883519
-
Behavior of restriction-modification systems as selfish mobile elements and their impact on genome evolution
-
Kobayashi, I. (2001) Behavior of restriction-modification systems as selfish mobile elements and their impact on genome evolution. Nucleic Acids Res., 29, 3742-3756.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 3742-3756
-
-
Kobayashi, I.1
-
20
-
-
0032493296
-
Structural, functional and evolutionary relationships between λ-exonuclease and the type II restriction endonucleases
-
Kovall, R.A. and Matthews, B.W. (1998) Structural, functional and evolutionary relationships between λ-exonuclease and the type II restriction endonucleases. Proc. Natl Acad. Sci. USA, 95, 7893-7897.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 7893-7897
-
-
Kovall, R.A.1
Matthews, B.W.2
-
21
-
-
0024284313
-
EcoRII can be activated to cleave refractory DNA recognition sites
-
Krüger, D.H., Barcak, G.J., Reuter, M. and Smith, H.O. (1988) EcoRII can be activated to cleave refractory DNA recognition sites. Nucleic Acids Res., 16, 3997-4008.
-
(1988)
Nucleic Acids Res
, vol.16
, pp. 3997-4008
-
-
Krüger, D.H.1
Barcak, G.J.2
Reuter, M.3
Smith, H.O.4
-
22
-
-
84982635009
-
The significance of distance and orientation of restriction endonuclease recognition sites in viral DNA genomes
-
Krüger, D.H., Kupper, D., Meisel, A., Reuter, M. and Schroeder, C. (1995) The significance of distance and orientation of restriction endonuclease recognition sites in viral DNA genomes. FEMS Microbiol. Rev., 17, 177-184.
-
(1995)
FEMS Microbiol. Rev
, vol.17
, pp. 177-184
-
-
Krüger, D.H.1
Kupper, D.2
Meisel, A.3
Reuter, M.4
Schroeder, C.5
-
23
-
-
0026511244
-
Functional domains in FokI restriction endonuclease
-
Li, L., Wu, L.P. and Chandrasegaran, S. (1992) Functional domains in FokI restriction endonuclease. Proc. Natl Acad. Sci. USA, 89, 4275-4279.
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 4275-4279
-
-
Li, L.1
Wu, L.P.2
Chandrasegaran, S.3
-
24
-
-
0034730640
-
Imaging DNA loops induced by restriction endonuclease EcoRII. A single amino acid substitution uncouples target recognition from cooperative DNA interaction and cleavage
-
Mücke, M., Lurz, R., Mackeldanz, P., Behlke, J., Krüger, D.H. and Reuter, M. (2000) Imaging DNA loops induced by restriction endonuclease EcoRII. A single amino acid substitution uncouples target recognition from cooperative DNA interaction and cleavage. J. Biol. Chem., 275, 30631-30637.
-
(2000)
J. Biol. Chem
, vol.275
, pp. 30631-30637
-
-
Mücke, M.1
Lurz, R.2
Mackeldanz, P.3
Behlke, J.4
Krüger, D.H.5
Reuter, M.6
-
25
-
-
0037134468
-
Asymmetric photocross-linking pattern of restriction endonuclease EcoRII to the DNA recognition sequence
-
Mücke, M., Pingoud, V., Grelle, G., Kraft, R., Krüger, D.H. and Reuter, M. (2002) Asymmetric photocross-linking pattern of restriction endonuclease EcoRII to the DNA recognition sequence. J. Biol. Chem., 277, 14288-14293.
-
(2002)
J. Biol. Chem
, vol.277
, pp. 14288-14293
-
-
Mücke, M.1
Pingoud, V.2
Grelle, G.3
Kraft, R.4
Krüger, D.H.5
Reuter, M.6
-
26
-
-
0038659759
-
Similarities and differences among 105 members of the Int family of site-specific recombinases
-
Nunes-Duby, S.E., Kwon, H.J., Tirumalai, R.S., Ellenberger, T. and Landy, A. (1998) Similarities and differences among 105 members of the Int family of site-specific recombinases. Nucleic Acids Res., 26, 391-406.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 391-406
-
-
Nunes-Duby, S.E.1
Kwon, H.J.2
Tirumalai, R.S.3
Ellenberger, T.4
Landy, A.5
-
27
-
-
0025952247
-
Activation of restriction endonuclease EcoRII does not depend on the cleavage of stimulator DNA
-
Pein, C.-D., Reuter, M., Meisel, A., Cech, D. and Krüger, D.H. (1991) Activation of restriction endonuclease EcoRII does not depend on the cleavage of stimulator DNA. Nucleic Acids Res., 19, 5139-5142.
-
(1991)
Nucleic Acids Res
, vol.19
, pp. 5139-5142
-
-
Pein, C.-D.1
Reuter, M.2
Meisel, A.3
Cech, D.4
Krüger, D.H.5
-
28
-
-
0035883723
-
Structure and function of type II restriction endonucleases
-
Pingoud, A. and Jeltsch, A. (2001) Structure and function of type II restriction endonucleases. Nucleic Acids Res., 29, 3705-3727.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 3705-3727
-
-
Pingoud, A.1
Jeltsch, A.2
-
29
-
-
0037134458
-
Evolutionary relationship between different subgroups of restriction endonucleases
-
Pingoud, V., Kubareva, E., Stengel, G., Friedhoff, P., Bujnicki, J.M., Urbanke, C., Sudina, A. and Pingoud, A. (2002) Evolutionary relationship between different subgroups of restriction endonucleases. J. Biol. Chem., 277, 14306-14314.
-
(2002)
J. Biol. Chem
, vol.277
, pp. 14306-14314
-
-
Pingoud, V.1
Kubareva, E.2
Stengel, G.3
Friedhoff, P.4
Bujnicki, J.M.5
Urbanke, C.6
Sudina, A.7
Pingoud, A.8
-
30
-
-
0032478624
-
Cooperative binding properties of restriction endonuclease EcoRII with DNA recognition sites
-
Reuter, M., Kupper, D., Meisel, A., Schroeder, C. and Krüger, D.H. (1998) Cooperative binding properties of restriction endonuclease EcoRII with DNA recognition sites. J. Biol. Chem., 273, 8294-8300.
-
(1998)
J. Biol. Chem
, vol.273
, pp. 8294-8300
-
-
Reuter, M.1
Kupper, D.2
Meisel, A.3
Schroeder, C.4
Krüger, D.H.5
-
31
-
-
0033582491
-
Regions of endonuclease EcoRII involved in DNA target recognition identified by membrane-bound peptide repertoires
-
Reuter, M., Schneider-Mergener, J., Kupper, D., Meisel, A., Mackeldanz, P., Krüger, D.H. and Schroeder, C. (1999) Regions of endonuclease EcoRII involved in DNA target recognition identified by membrane-bound peptide repertoires. J. Biol. Chem., 274, 5213-5221.
-
(1999)
J. Biol. Chem
, vol.274
, pp. 5213-5221
-
-
Reuter, M.1
Schneider-Mergener, J.2
Kupper, D.3
Meisel, A.4
Mackeldanz, P.5
Krüger, D.H.6
Schroeder, C.7
-
32
-
-
0035175516
-
REBASE - Restriction enzymes and methylases
-
Roberts, R.J. and Macelis, D. (2001) REBASE-restriction enzymes and methylases. Nucleic Acids Res., 29, 268-269.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 268-269
-
-
Roberts, R.J.1
Macelis, D.2
-
33
-
-
0027303970
-
Changing endonuclease EcoRII Tyr308 to Phe abolishes cleavage but not recognition: Possible homology with the Int-family of recombinases
-
Topal, M.D. and Conrad, M. (1993) Changing endonuclease EcoRII Tyr308 to Phe abolishes cleavage but not recognition: possible homology with the Int-family of recombinases. Nucleic Acids Res., 21, 2599-2603.
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 2599-2603
-
-
Topal, M.D.1
Conrad, M.2
-
34
-
-
0035883725
-
The structural basis of damaged DNA recognition and endonucleolytic cleavage for very short patch repair endonuclease
-
Tsutakawa, S.E. and Morikawa, K. (2001) The structural basis of damaged DNA recognition and endonucleolytic cleavage for very short patch repair endonuclease. Nucleic Acids Res., 29, 3775-3783.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 3775-3783
-
-
Tsutakawa, S.E.1
Morikawa, K.2
-
35
-
-
0033544707
-
Recognition of a TG mismatch: The crystal structure of very short patch repair endonuclease in complex with a DNA duplex
-
Tsutakawa, S.E., Jingami, H. and Morikawa, K. (1999a) Recognition of a TG mismatch: the crystal structure of very short patch repair endonuclease in complex with a DNA duplex. Cell, 99, 615-623.
-
(1999)
Cell
, vol.99
, pp. 615-623
-
-
Tsutakawa, S.E.1
Jingami, H.2
Morikawa, K.3
-
36
-
-
0033001622
-
Crystallographic and functional studies of very short patch repair endonuclease
-
Tsutakawa, S.E., Muto, T., Kawate, T., Jingami, H., Kunishima, N., Ariyoshi, M., Kohda, D., Nakagawa, M. and Morikawa, K. (1999b) Crystallographic and functional studies of very short patch repair endonuclease. Mol. Cell, 3, 621-628.
-
(1999)
Mol. Cell
, vol.3
, pp. 621-628
-
-
Tsutakawa, S.E.1
Muto, T.2
Kawate, T.3
Jingami, H.4
Kunishima, N.5
Ariyoshi, M.6
Kohda, D.7
Nakagawa, M.8
Morikawa, K.9
-
37
-
-
0035946911
-
FokI requires two specific DNA sites for cleavage
-
Vanamee, E.S., Santagata, S. and Aggarwal, A.K. (2001) FokI requires two specific DNA sites for cleavage. J. Mol. Biol., 309, 69-78.
-
(2001)
J. Mol. Biol
, vol.309
, pp. 69-78
-
-
Vanamee, E.S.1
Santagata, S.2
Aggarwal, A.K.3
-
38
-
-
0030790696
-
Structure of the multimodular endonuclease FokI bound to DNA
-
Wah, D.A., Hirsch, J.A., Dorner, L.F., Schildkraut, I. and Aggarwal, A.K. (1997) Structure of the multimodular endonuclease FokI bound to DNA. Nature, 388, 97-100.
-
(1997)
Nature
, vol.388
, pp. 97-100
-
-
Wah, D.A.1
Hirsch, J.A.2
Dorner, L.F.3
Schildkraut, I.4
Aggarwal, A.K.5
-
39
-
-
0032169674
-
Structure of FokI has implications for DNA cleavage
-
Wah, D.A., Bitinaite, J., Schildkraut, I. and Aggarwal, A.K. (1998) Structure of FokI has implications for DNA cleavage. Proc. Natl Acad. Sci. USA, 95, 10564-10569.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 10564-10569
-
-
Wah, D.A.1
Bitinaite, J.2
Schildkraut, I.3
Aggarwal, A.K.4
-
40
-
-
0033529244
-
Identification of the endonuclease domain encoded by R2 and other site-specific, non-long terminal repeat retrotransposable elements
-
Yang, J., Malik, H.S. and Eickbush, T.H. (1999) Identification of the endonuclease domain encoded by R2 and other site-specific, non-long terminal repeat retrotransposable elements. Proc. Natl Acad. Sci. USA, 96, 7847-7852.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 7847-7852
-
-
Yang, J.1
Malik, H.S.2
Eickbush, T.H.3
|