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Volumn 46, Issue 1, 2006, Pages 392-400

Development and evaluation of an in silico model for hERG binding

Author keywords

[No Author keywords available]

Indexed keywords

DATA REDUCTION; DRUG PRODUCTS; ETHERS; FUNCTION EVALUATION; MATHEMATICAL MODELS; REGRESSION ANALYSIS; VECTORS;

EID: 33244474244     PISSN: 15499596     EISSN: 1549960X     Source Type: Journal    
DOI: 10.1021/ci050308f     Document Type: Conference Paper
Times cited : (113)

References (24)
  • 1
    • 0030066573 scopus 로고    scopus 로고
    • Molecular genetic insights into cardiovascular disease
    • Keating, M. T.; Sanguinetti, M. C. Molecular genetic insights into cardiovascular disease. Science 1996, 272, 681-685.
    • (1996) Science , vol.272 , pp. 681-685
    • Keating, M.T.1    Sanguinetti, M.C.2
  • 2
    • 0142107369 scopus 로고    scopus 로고
    • Troubleshooting problems with in vitro screening of drugs for QT interval prolongation using HERG K+ channels expressed in mammalian cell lines and Xenopus oocytes
    • Witchel, H. J.; Milnes, J. T.; Mitcheson, J. S.; Hancox, J. C. Troubleshooting problems with in vitro screening of drugs for QT interval prolongation using HERG K+ channels expressed in mammalian cell lines and Xenopus oocytes. J. Pharmacol. Toxicol. Methods 2002, 48, 65-80.
    • (2002) J. Pharmacol. Toxicol. Methods , vol.48 , pp. 65-80
    • Witchel, H.J.1    Milnes, J.T.2    Mitcheson, J.S.3    Hancox, J.C.4
  • 3
  • 4
    • 0036229805 scopus 로고    scopus 로고
    • Three-dimensional quantitative structure-activity relationship for inhibition of human ether-a-go-go-related gene potassium channel
    • Ekins, S.; Crumb, W. J.; Sarazan, R. D.; Wikel, J. H.; Wrighton, S. A. Three-Dimensional Quantitative Structure-Activity Relationship for Inhibition of Human Ether-a-Go-Go-Related Gene Potassium Channel. J. Pharmacol. Exp. Ther. 2002, 301, 427-434.
    • (2002) J. Pharmacol. Exp. Ther. , vol.301 , pp. 427-434
    • Ekins, S.1    Crumb, W.J.2    Sarazan, R.D.3    Wikel, J.H.4    Wrighton, S.A.5
  • 5
    • 0037194634 scopus 로고    scopus 로고
    • Toward a pharmacophore for drugs inducing the long QT syndrome: Insights from a CoMFA study of HERG K(+) channel blockers
    • Cavalli, A.; Poluzzi, E.; De Ponti, F.; Recanatini, M. Toward a pharmacophore for drugs inducing the long QT syndrome: insights from a CoMFA study of HERG K(+) channel blockers. J. Med. Chem. 2002, 45, 3844-3853.
    • (2002) J. Med. Chem. , vol.45 , pp. 3844-3853
    • Cavalli, A.1    Poluzzi, E.2    De Ponti, F.3    Recanatini, M.4
  • 7
    • 0034728673 scopus 로고    scopus 로고
    • Prediction of properties from simulations: Free energies of solvation in hexadecane, octanol, and water
    • Duffy, E. M.; Jorgensen, W. L. Prediction of Properties from Simulations: Free Energies of Solvation in Hexadecane, Octanol, and Water. J. Am. Chem. Soc. 2000, 122, 2878-2888.
    • (2000) J. Am. Chem. Soc. , vol.122 , pp. 2878-2888
    • Duffy, E.M.1    Jorgensen, W.L.2
  • 8
    • 0036904104 scopus 로고    scopus 로고
    • A virtual screening method for prediction of the HERG potassium channel liability of compound libraries
    • Roche, O.; Trube, G. J. Z.; Pflimlin, P.; Alanine, A.; Schneider, G. A virtual screening method for prediction of the HERG potassium channel liability of compound libraries. ChemBioChem. 2002, 3, 455-459.
    • (2002) ChemBioChem. , vol.3 , pp. 455-459
    • Roche, O.1    Trube, G.J.Z.2    Pflimlin, P.3    Alanine, A.4    Schneider, G.5
  • 10
    • 0038487659 scopus 로고    scopus 로고
    • Prediction of hERG potassium channel affinity by traditional and hologram qSAR methods
    • Keseru, G. M. Prediction of hERG potassium channel affinity by traditional and hologram qSAR methods. Bioorg. Med. Chem. Lett. 2003, 13, 2773-2775.
    • (2003) Bioorg. Med. Chem. Lett. , vol.13 , pp. 2773-2775
    • Keseru, G.M.1
  • 11
    • 1842686775 scopus 로고    scopus 로고
    • A model for identifying HERG K+ channel blockers
    • Aronov, A. M.; Goldman, B. B. A model for identifying HERG K+ channel blockers. Bioorg. Med. Chem. 2004, 12, 2307-2315.
    • (2004) Bioorg. Med. Chem. , vol.12 , pp. 2307-2315
    • Aronov, A.M.1    Goldman, B.B.2
  • 12
    • 3543145510 scopus 로고    scopus 로고
    • HERG binding specificity and binding site structure: Evidence from a fragment-based evolutionary computing SAR study
    • Bains, W.; Basman, A.; White, C. HERG binding specificity and binding site structure: evidence from a fragment-based evolutionary computing SAR study. Prog. Biophys. Mol. Biol. 2004, 86, 205-233.
    • (2004) Prog. Biophys. Mol. Biol. , vol.86 , pp. 205-233
    • Bains, W.1    Basman, A.2    White, C.3
  • 14
    • 17844369895 scopus 로고    scopus 로고
    • Generalized fragment-substructure based property prediction method
    • Clark, M. Generalized Fragment-Substructure Based Property Prediction Method. J. Chem. Inf. Model. 2005, 45, 30-38.
    • (2005) J. Chem. Inf. Model. , vol.45 , pp. 30-38
    • Clark, M.1
  • 18
    • 0035478854 scopus 로고    scopus 로고
    • Random forests
    • Breiman, L. Random Forests. Machine Learning 2001, 45, 5-32.
    • (2001) Machine Learning , vol.45 , pp. 5-32
    • Breiman, L.1
  • 19
    • 0345548657 scopus 로고    scopus 로고
    • Random forest: A classification and regression tool for compound classification and QSAR modeling
    • Svetnik, V.; Liaw, A.; Tong, C.; Culberson, J. C.; Sheridan, R. P.; Feuston, B. P. Random Forest: A Classification and Regression Tool for Compound Classification and QSAR Modeling. J. Chem. Inf. Model. 2003, 43, 1947-1958.
    • (2003) J. Chem. Inf. Model. , vol.43 , pp. 1947-1958
    • Svetnik, V.1    Liaw, A.2    Tong, C.3    Culberson, J.C.4    Sheridan, R.P.5    Feuston, B.P.6
  • 20
    • 0028467707 scopus 로고
    • Application of genetic function approximation to quantitative structure-activity relationships and quantitative structure-property relationships
    • Rogers, D.; Hopfinger, A. J. Application of Genetic Function Approximation to Quantitative Structure-Activity Relationships and Quantitative Structure-Property Relationships. J. Chem. Inf. Model. 1994, 34, 854-866.
    • (1994) J. Chem. Inf. Model. , vol.34 , pp. 854-866
    • Rogers, D.1    Hopfinger, A.J.2
  • 21
    • 84858532366 scopus 로고    scopus 로고
    • The R Foundation: Vienna, Austria
    • R, 2.2.0; The R Foundation: Vienna, Austria, 2005. http://www.r-project. org/.
    • (2005) R, 2.2.0
  • 22
    • 84888708721 scopus 로고    scopus 로고
    • Eindhoven Institute of Technology: Eindhoven, Netherlands
    • Berkelaar, M. lp_solve; Eindhoven Institute of Technology: Eindhoven, Netherlands, 2005. http://lpsolve.sourceforge.net/.
    • (2005) Lp_solve
    • Berkelaar, M.1
  • 23
    • 10044263240 scopus 로고    scopus 로고
    • Similarity to molecules in the training set is a good discriminator for prediction accuracy in QSAR
    • Sheridan, R. P.; Feuston. B. P.; Maiorov, V. N.; Kearsley, S. K. Similarity to Molecules in the Training Set Is a Good Discriminator for Prediction Accuracy in QSAR. J. Chem. Inf. Model. 2004, 44, 1912-1928.
    • (2004) J. Chem. Inf. Model. , vol.44 , pp. 1912-1928
    • Sheridan, R.P.1    Feuston, B.P.2    Maiorov, V.N.3    Kearsley, S.K.4
  • 24
    • 84898988245 scopus 로고    scopus 로고
    • Geometry and support vector regression
    • Dietterich, T., Becker, S., Ghahramani, Z., Eds.; MIT Press: Cambridge, MA
    • Bi, J.; Bennett, K. P. Duality, Geometry and Support Vector Regression. In Advances in Neural Information Processing Systems 14; Dietterich, T., Becker, S., Ghahramani, Z., Eds.; MIT Press: Cambridge, MA, 2002; pp 593-600.
    • (2002) Advances in Neural Information Processing Systems , vol.14 , pp. 593-600
    • Bi, J.1    Duality, B.K.P.2


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