Expression, purification and properties of shikimate dehydrogenase from Mycobacterium tuberculosis

Journal of Biochemistry and Molecular Biology

Volumn 38, Issue 5, 2005, Pages 624-631

  Zhang, Xuelian ^a   Zhang, Shunbao ^a   Hao, Fang ^a   Lai, Xuhui ^a   Yu, Haidong ^a   Huang, Yishu ^a   Wang, Honghai ^a  

^a FUDAN UNIVERSITY   (China)

Author keywords

Enzymatic characterization; Mycobacterium tuberculosis; Recombinant protein; Shikimate dehydrogenase; Shikimate pathway

Indexed keywords

BACTERIA (MICROORGANISMS); MAMMALIA; MYCOBACTERIUM TUBERCULOSIS;

EID: 32644444805     PISSN: 12258687     EISSN: 12258687     Source Type: Journal    
DOI: 10.5483/bmbrep.2005.38.5.624     Document Type: Article

References (28)

1. Anton, I. A. and Coggins, J. R. (1988) Sequencing and overexpression of the Escherichia coli aroE gene encoding shikimate dehydrogenase. Biochem. J. 249, 319-326.
2. Balinsky D., Dennis A. W. and Cleland W. W. (1971) Kinetic and isotope-exchange studies on shikimamte dehydrogense from pisum sativum. Biochem 10, 1947-1952.
3. Barea, J. L. and Giles, N. H. (1978) Purification and characterization of quinate (shikimate) dehydrogenase, an enzyme in the inducible quinic acid catabolic pathway of Neurospora crassa. Biochim. Biophys. Acta. 524, 1-14.
4. Benach, J., Lee, I., Edstrom, W., Kuzin, A. P., Chiang, Y., Acton, T. B., Montelione, G. T. and Hunt, J. F. (2003) The 2.3-Å Crystal structure of the shikimate 5-dehydrogenase orthologue YdiB from Escherichia coli suggests a novel catalytic environment for an NAD-dependent dehydrogenase. J. Bio. Chem. 278, 19176-19182.
5. Chaudhuri, S. and Coggins J. R. (1985) The purification of shikimate dehydrogenase from Escherichia coli. Biochem. J. 226, 217-223.
6. Chaudhuri, S., Anton, I. A. and Coggins, J. R. (1987) Shikimate dehydrogenase from Escherichia coli. Methods Enzymol. 142, 315-320.
7. Cole, S. T., Brosch, R., Parkhill, J., Garnier, T., Churcher, C., Harris, D., Gordon, S. V., Eiglmeier, K., Gas, S., Barry III, C. E., Tekaia, F., Badcock, K., Basham, D., Brown, D., Chillingworth, T., Connor, R., Davies, R., Devlin, K., Feltwell, T., Gentles, S., Hamlin, N., Holroyd, S., Hornsby, T., Jagels, K., Krogh, A., McLean, J., Moule, S., Murphy, L., Oliver, S., Osborne, J., Quail, M. A., Rajandream, M. A., Rogers, J., Rutter, S., Seeger, K., Skelton, S., Squares, S., Sqares, R., Sulston, J. E., Taylor, K., Whitehead, S. and Barrell, B. G. (1998) Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence. Nature 393, 537-544.
8. Davies, G. M., Barrett-Bee, K. J., Jude, D. A., Lehan, M., Nichols, W. W., Pinder, P. E., Thain, J. L., Watkins, W. J. and Wilson, R. G. (1994) (6S)-6-fluoroshikimic acid, an antibacterial agent acting on the aromatic biosynthetic pathway. Antimicrob. Agents Chemother. 38, 403-406.
9. Dowsett, J. R. and Corbett, J. R. (1971) The purification and properties of shikimate dehydrogenase. Biochem. J. 123, 23.
10. Goel A. K, Rajagopal L. and Sonti, R. V. (2001) Pigment and virulence deficiencies associated with mutations in the aroE gene of Xanthomonas oryzae pv. Oryzae. Appl. Environ. Microbio. 67, 245-250.
11. Greenfield, N. J. (1996) Methods to estimate the conformation of proteins and polypeptides from circular dichroism. Data Anal. Biochem. 235, 1-10.
12. Knaggs, A. R. (2003) The biosynthesis of shikimate metabolites. Nat. Prod. Rep. 20, 119-136.
13. Kurland, C. and Gallant, J. (1996) Errors of heterologous protein expression. Curr. Opin. Biotechnol. 7, 489-493.
14. Lim, S., Schroder, I. and Monbouquette, H. G. (2004) A thermostable shikimate 5-dehydrogenase from the archaeon Archaeoglobus fulgidus. FEMS Microbiol Lett. 238, 101-106.
15. Lourenco, E. J., Silva, G. M. L. and Neves, V. A. (1991) Purification and properties of shikimate dehydrogenase from cucumber (Cucumis sativus L). J. Agric. Food Chem. 39, 458-462.
16. Maclean, J., Campbell, S. A., Pollock, K., Chackrewarthy, S., Coggins, J. R. and Lapthorn, A. J. (2000) Crystallization and preliminary X-ray analysis of shikimate dehydrogenase from Escherichia coli. Acta Crystallogr. Sect. D. 56, 512-515.
17. Magalhães, M. L. B., Pereira, C. P., Basso, L. A. and Santos, D. S. (2002) Cloning and expression of functional shikimate dehydrogenase (EC 1.1.1.25) from Mycobacterium tuberculosis H37Rv. Protein Expression Purification 26, 2659-2664.
18. Michel, G., Roszak, A. W., Sauve, V., Maclean, J., Matte, A., Coggins, J. R., Cygler, M. and Lapthorn, A. J. (2003) Structures of shikimate dehydrogenase AroE and its paralog YdiB. J. Biol. Chem. 278, 19463-19472.
19. Padyana, A. K. and Burley, S. K. (2003) Crystal structure of shikimate 5-dehydrogenase (SDH) bound to NADP: insights into function and evolution. Structure 11, 1005-1013.
20. Parish, T. and Stoker, N. G. (2002) The common aromatic amino acid biosynthesis pathway is essential in Mycobacterium tuberculosis. Microbiology 148, 3069-3077.
21. Policy, L. D. (1978) Purification and characterization of 3-dehydroquinate hydrolase and shikimate oxidoreductase. Biochim.Biophys. Acta. 526, 259-266.
22. Roberts, F., Roberts, C. W., Johnson, J. J., Kyle, D. E., Krell, T.,Coggins, J. R., Coombs, G. H., Milhous, W. K., Tzipori, S., Ferguson, D. J. P., Chakrabarti, D. and Mcleod, R. (1998) Evidence for the shikimate pathway in apicomplexan parasites. Nature 393, 801-805.
23. Singh, S., Korolev, S., Koroleva, O., Zarembinski, T., Collart, F., Joachimiak, A. and Christendat, D. (2005) Crystal Structure of a novel shikimate dehydrogenase from Haemophilus influenzae. J. Bio. Chem. 280, 17101-17108.
24. Sreerama, N. and Woody, R. W. (2000) Estimation of protein secondary structure from circular dichroism spectra: comparison of CONTIN, SELCON, and CDSSTR methods with an expanded reference set Anal. Biochem. 287, 252-260.
25. Steinrucken, H. C. and Amrhein, N. (1980) The herbicide glyphosate is a potent inhibitor of 5-enolpyruvyl-shikimic acid-3-phosphate synthase. Biochem. Biophys. Res. Commun. 94, 1207-1212.
26. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. and Higgins, D. G. (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic. Acids Res. 24, 4876-4882.
27. Yang, J. T., Wu, C. S. and Martinez, H. M. (1986) Calculation of protein conformation from circular dichroism. Methods Enzymol. 130, 208-269.
28. Ye, S., Delft, F., Brooun, A., Knuth, M. W., Swanson, R. V. and McRee D. E. (2003) The crystal structure of shikimate dehydrogenase (AroE) reveals a unique NADPH binding mode. J. Bacteriol. 185, 4144-4151.