A thermostable shikimate 5-dehydrogenase from the archaeon Archaeoglobus fulgidus

FEMS Microbiology Letters

Volumn 238, Issue 1, 2004, Pages 101-106

  Lim, Sierin ^a   Schröder, Imke ^a,b   Monbouquette, Harold G ^a,c  

^a Biomedical Engineering Interdepartmental Program   (United States)

^b Univ C   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Archaea; Archaeoglobus fulgidus; Aromatic amino acid biosynthesis; Shikimate 5 dehydrogenase

Indexed keywords

BACTERIAL ENZYME; NICOTINAMIDE ADENINE DINUCLEOTIDE; NICOTINAMIDE ADENINE DINUCLEOTIDE PHOSPHATE; RECOMBINANT ENZYME; SHIKIMATE DEHYDROGENASE; SHIKIMIC ACID; UNCLASSIFIED DRUG;

AMINO ACID SYNTHESIS; ARCHAEOGLOBUS FULGIDUS; ARTICLE; CATALYSIS; ENZYME ACTIVITY; ENZYME ASSAY; ENZYME KINETICS; ENZYME METABOLISM; ENZYME PURIFICATION; ENZYME SPECIFICITY; ENZYME STABILITY; ESCHERICHIA COLI; GENE OVEREXPRESSION; MOLECULAR CLONING; NONHUMAN; PRIORITY JOURNAL; REDUCTION; TEMPERATURE DEPENDENCE; THERMOSTABILITY;

ALCOHOL OXIDOREDUCTASES; ARCHAEOGLOBUS FULGIDUS; CLONING, MOLECULAR; DIMERIZATION; ENZYME STABILITY; ESCHERICHIA COLI; HALF-LIFE; HYDROGEN-ION CONCENTRATION; MODELS, MOLECULAR; MOLECULAR WEIGHT; NAD; NADP; POTASSIUM CHLORIDE; PROTEIN CONFORMATION; RECOMBINANT PROTEINS; SHIKIMIC ACID; SODIUM CHLORIDE; SUBSTRATE SPECIFICITY; TEMPERATURE;

ARCHAEA; ARCHAEOGLOBUS; ARCHAEOGLOBUS FULGIDUS; ESCHERICHIA COLI;

EID: 4444337689     PISSN: 03781097     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.femsle.2004.07.023     Document Type: Article

References (35)

1. K.M. Herrmann, and L.M. Weaver The shikimate pathway Annu. Rev. Plant Physiol. Plant Mol. Biol. 50 1999 473 503
2. C. Gonzáles-Bello, M.K. Manthey, J.H. Harris, A.R. Hawkins, J.R. Coggins, and C. Abell Synthesis of 2-bromo- and 2-fluoro-3-dehydroshikimic acids and 2-bromo- and 2-fluoroshikimic acids using synthetic and enzymatic approaches J. Org. Chem. 63 1998 1591 1597
3. C. Gonzáles-Bello, J.R. Coggins, A.R. Hawkins, and C. Abell Synthesis of 4-deoxyquinic, 4-deoxyshikimic and 4-deoxy-3-dehydroshikimic acids J. Chem. Soc., Perkin Trans 1 1999 854 859
4. A.C. Baillie, J.R. Corbett, J.R. Dowsett, and P. McCloskey Inhibitors of shikimate dehydrogenase as potential herbicides Pestic. Sci. 3 1972 113 120
5. S. Chaudhuri, and J.R. Coggins Purification of shikimate dehydrogenase from Escherichia coli Biochem. J. 226 1985 217 223
6. L.D. Polley Purification and characterization of 3-dehydroquinate hydrolase and shikimate oxidoreductase Biochim. Biophys. Acta 526 1978 259 266
7. C.A. Bonner, and R.A. Jensen Cloning of cDNA encoding the bifunctional dehydroquinase-shikimate dehydrogenase of aromatic-amino-acid biosynthesis in Nicotiana tabacum Biochem. J. 302 1994 11 14
8. R.K. Deka, I.A. Anton, B. Dunbar, and J.R. Coggins The characterization of the shikimate pathway enzyme dehydroquinase from Pisum sativum FEBS Lett. 349 1994 397 402
9. J.L. Barea, and N.H. Giles Purification and characterization of quinate (shikimate) dehydrogenase, an enzyme in the inducible quinic acid catabolic pathway of Neurospora crassa Biochim. Biophys. Acta 524 1978 1 14
10. J.D. Moore, and A.R. Hawkins Overproduction of, and interaction within, bifunctional domains from the amino- and carboxy-termini of the pentafunctional AROM protein of Aspergillus nidulans Mol. Gen. Genet. 240 1993 92 102
11. G. Michel, A.W. Roszak, V. Sauvé, J. Maclean, A. Matte, J.R. Coggins, M. Cygler, and A.J. Lapthorn Structure of shikimate dehydrogenase AroE and its paralog YdiB J. Biol. Chem. 273 2003 19463 19472
12. A.K. Padyana, and S.K. Burley Crystal structure of shikimate 5-dehydrogenase (SDH) bound to NADP: insights into function and evolution Structure 11 2003 1005 1013
13. J. Benach, I. Lee, W. Edstrom, A.P. Kuzin, Y. Chiang, T.B. Acton, G.T. Montelione, and J.F. Hunt The 2.3-A crystal structure of the shikimate 5-dehydrogenase orthologue YdiB from Escherichia coli suggests a novel catalytic environment for an NAD-dependent dehydrogenase J. Biol. Chem. 278 2003 19176 19182
14. S. Ye, F. von Delft, A. Brooun, M.W. Knuth, R.V. Swanson, and D.E. McRee The crystal structure of shikimate dehydrogenase (AroE) reveals a unique NADPH binding mode J. Bacteriol. 185 2003 4144 4151
15. H.-P. Klenk, R.A. Clayton, J.-F. Tomb, O. White, K.E. Nelson, K.A. Ketchum, R.J. Dodson, M. Gwinn, E.K. Hickey, J.D. Peterson, D.L. Richardson, A.R. Kerlavage, D.E. Graham, and N.C. Kyrpides The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus Nature 390 1997 364 370
16. K.O. Stetter, G. Lauerer, M. Thomm, and A. Neuner Isolation of extremely thermophilic sulfate reducer: evidence for a novel branch of archaebacteria Science 236 1987 822 824
17. B. Perbal A Practical Guide to Molecular Cloning 1988 Wiley New York
18. B.W. Groen, M.A.G. Van Kleef, and J.A. Duine Quinohaemoprotein alcohol dehydrogenase apoenzyme from Pseudomonas testosteroni Biochem. J. 234 1986 611 615
19. J. Maclean, S.A. Campbell, K. Pollock, S. Chakrewarthy, J.R. Coggins, and A.J. Lapthorn Crystallization and preliminary X-ray analysis of shikimate dehydrogenase from Escherichia coli Acta Crystallogr. D 2000 2000 512 515
20. S.W. Kengen, F.J. Bikker, W.R. Hagen, W.M. de Vos, and J. van der Oost Characterization of a catalase-peroxidase from the hyperthermophilic archaeon Archaeoglobus fulgidus Extremophiles 5 2001 323 332
21. A. Labes, and P. Schonheit ADP-dependent glucokinase from hyperthermophilic sulfate reducing archaeon Archaeoglobus fulgidus strain 7324 Arch. Microbiol. 180 2003 69 75
22. A. Vadas, H.G. Monbouquette, E. Johnson, and I. Schroeder Identification and characterization of a novel ferric reductase from the hyperthermophilic archaeon Archaeoglobus fulgidus J. Biol. Chem. 274 1999 36715 36721
23. +-specific glutamate dehydrogenase from Archaeoglobus fulgidus Arch. Microbiol. 168 1997 536 539
24. S. Chaudhuri, I.A. Anton, and J.R. Coggins Shikimate dehydrogenase from Escherichia coli S.P. Colowick N.O. Kaplan Methods in Enzymology vol. 142 1987 Academic Press Orlando, FL 315 320
25. E.J. Lourenco, G.M.L. Silva, and V.A. Neves Purification and properties of shikimate dehydrogenase from cucumber (Cucumis sativus L.) J. Agric. Food Chem. 39 1991 458 462
26. J.R. Dowsett, and J.R. Corbett The purification and properties of shikimate dehydrogenase Biochem. J. 123 1971 23
27. J. Diaz, and F. Merino Shikimate dehydrogenase from pepper (Capsicum annuum) seedlings. Purification and properties Physiol. Plant. 100 1997 147 152
28. T. Collins, M.-A. Meuwis, C. Gerday, and G. Feller Activity, stability, and flexibility in glycosidases adapted to extreme thermal environments J. Mol. Biol. 328 2003 419 428
29. S. D'Amico, J.-C. Marx, C. Gerday, and G. Feller Activity†"stability relationships in extremophilic enzymes J. Biol. Chem. 278 2003 7891 7896
30. M.F. Roberts Osmoadaptation and osmoregulation in archaea Front. Biosci. 5 2000 D796 D812
31. P. Lamosa, D.L. Turner, R. Ventura, C. Maycock, and H. Santos Protein stabilization by compatible solutes: effect of diglycerol phosphate on the dynamics of Desulfovibrio gigas rubredoxin studied by NMR Eur. J. Biochem. 270 2003 4606 4614
32. M.L.B. Magalhaes, C.P. Pereira, L.A. Basso, and D.S. Santos Cloning and expression of functional shikimate dehydrogenase (EC 1.1.1.25) from Mycobacterium tuberculosis H37Rv Protein Expr. Purif. 26 2002 59 64
33. V. Ossipov, C. Bonner, S. Ossipova, and R. Jensen Broad-specificity quinate (shikimate) dehydrogenase from Pinus taeda needles Plant Physiol. Biochem. 38 2000 923 928
34. L.A. Kelly, R.M. MacCallum, and M.J.E. Sternberg Enhanced genome annotation using structural profiles in the program 3D-PSSM J. Mol. Biol. 299 2000 499 520
35. DeLano, W.L. (2002) The PyMOL Molecular Graphics System. DeLano Scientific, San Carlos CA, USA. http://www.pymol.org