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Volumn 171, Issue 3, 2005, Pages 1419-1436

Likelihoods from summary statistics: Recent divergence between species

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Indexed keywords

NUCLEOTIDE;

EID: 32544444406     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: 10.1534/genetics.104.040402     Document Type: Article
Times cited : (21)

References (81)
  • 1
    • 0028797897 scopus 로고
    • Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA
    • AKASHI, H., 1995 Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA. Genetics 139: 1067-1076.
    • (1995) Genetics , vol.139 , pp. 1067-1076
    • Akashi, H.1
  • 2
    • 0026007855 scopus 로고
    • Molecular evolution of inversions in Drosophila pseudoobscura: The amylase region
    • USA
    • AQUADRO, C. F., A. L. WEAVER, S. W. SCHAEFFER and W. W. ANDERSON, 1991 Molecular evolution of inversions in Drosophila pseudoobscura: the amylase region. Proc. Natl. Acad. Sci. USA 88: 305-309.
    • (1991) Proc. Natl. Acad. Sci. , vol.88 , pp. 305-309
    • Aquadro, C.F.1    Weaver, A.L.2    Schaeffer, S.W.3    Anderson, W.W.4
  • 3
    • 0036909632 scopus 로고    scopus 로고
    • Estimating divergence times from molecular data on phylogenetic and population genetic timescales
    • ARBOGAST, B. S., S. V. EDWARDS, J. WAKELEY, P. BEERLI and J. B. SLOWINSKI, 2002 Estimating divergence times from molecular data on phylogenetic and population genetic timescales. Annu. Rev. Ecol. Syst. 33: 707-740.
    • (2002) Annu. Rev. Ecol. Syst. , vol.33 , pp. 707-740
    • Arbogast, B.S.1    Edwards, S.V.2    Wakeley, J.3    Beerli, P.4    Slowinski, J.B.5
  • 4
    • 2542443908 scopus 로고    scopus 로고
    • Recent developments in genetic data analysis: What can they tell us about human demographic history?
    • BEAUMONT, M. A., 2004 Recent developments in genetic data analysis: What can they tell us about human demographic history? Heredity 92: 365-379.
    • (2004) Heredity , vol.92 , pp. 365-379
    • Beaumont, M.A.1
  • 5
    • 0036964474 scopus 로고    scopus 로고
    • Approximate Bayesian computation in population genetics
    • BEAUMONT, M. A., W. ZHANG and D. J. BALDING, 2002 Approximate Bayesian computation in population genetics. Genetics 162: 2025-2035.
    • (2002) Genetics , vol.162 , pp. 2025-2035
    • Beaumont, M.A.1    Zhang, W.2    Balding, D.J.3
  • 6
    • 0035836728 scopus 로고    scopus 로고
    • Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach
    • USA
    • BEERLI, P., and J. FELSENSTEIN, 2001 Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach. Proc. Natl. Acad. Sci. USA 98: 4563-4568.
    • (2001) Proc. Natl. Acad. Sci. , vol.98 , pp. 4563-4568
    • Beerli, P.1    Felsenstein, J.2
  • 7
    • 0002464001 scopus 로고    scopus 로고
    • Integrating likelihood methods for eliminating nuisance parameters
    • BERGER, J. O., B. LISEO and R. L. WOLPERT, 1999 Integrating likelihood methods for eliminating nuisance parameters. Stat. Sci. 14: 1-28.
    • (1999) Stat. Sci. , vol.14 , pp. 1-28
    • Berger, J.O.1    Liseo, B.2    Wolpert, R.L.3
  • 8
    • 0036136814 scopus 로고    scopus 로고
    • A maximum likelihood method for analyzing pseudogene evolution: Implications for silent site evolution in humans and rodents
    • BUSTAMANTE, C. D., R. NIELSEN and D. L. HARTL, 2002 A maximum likelihood method for analyzing pseudogene evolution: implications for silent site evolution in humans and rodents. Mol. Biol. Evol. 19: 110-117.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 110-117
    • Bustamante, C.D.1    Nielsen, R.2    Hartl, D.L.3
  • 9
    • 0001235253 scopus 로고
    • Inbreeding and variance effective population numbers
    • CROW, J. F., and C. DENNISTON, 1988 Inbreeding and variance effective population numbers. Evolution 42: 482-495.
    • (1988) Evolution , vol.42 , pp. 482-495
    • Crow, J.F.1    Denniston, C.2
  • 11
    • 3142712394 scopus 로고    scopus 로고
    • Importance sampling on coalescent histories
    • DE IORIO, M., and R. C. GRIFFITHS, 2004 Importance sampling on coalescent histories. I. Adv. Appl. Probab. 36: 417-433.
    • (2004) I. Adv. Appl. Probab. , vol.36 , pp. 417-433
    • De Iorio, M.1    Griffiths, R.C.2
  • 12
    • 0031773191 scopus 로고    scopus 로고
    • Neutrality tests based on the distribution of haplotypes under an infinite-site model
    • DEPAULIS, F., and M. VEUILLE, 1998 Neutrality tests based on the distribution of haplotypes under an infinite-site model. Mol. Biol. Evol. 15: 1788-1790.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 1788-1790
    • Depaulis, F.1    Veuille, M.2
  • 13
    • 0034983649 scopus 로고    scopus 로고
    • Haplotype tests using coalescent simulations conditional on the number of segregating sites
    • DEPAULIS, F., S. MOUSSET and M. VEUILLE, 2001 Haplotype tests using coalescent simulations conditional on the number of segregating sites. Mol. Biol. Evol. 18: 1136-1138.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1136-1138
    • Depaulis, F.1    Mousset, S.2    Veuille, M.3
  • 14
    • 0040003672 scopus 로고
    • Drosophila pseudoobscura and its American relatives, Drosophila persimilis and Drosophila miranda
    • edited by R. C. KING. Plenum Press, New York
    • DOBZHANSKY, T., and J. R. POWELL, 1975 Drosophila pseudoobscura and its American relatives, Drosophila persimilis and Drosophila miranda, pp. 537-587 in Invertebrates of Genetic Interest, edited by R. C. KING. Plenum Press, New York.
    • (1975) Invertebrates of Genetic Interest , pp. 537-587
    • Dobzhansky, T.1    Powell, J.R.2
  • 15
    • 34347165959 scopus 로고
    • Studies on hybrid sterility III. A comparison of the chromosome structure in two related species, Drosophila pseudoobscura and Drosophila miranda
    • DOBZHANSKY, T., and C. C. TAN, 1936 Studies on hybrid sterility III. A comparison of the chromosome structure in two related species, Drosophila pseudoobscura and Drosophila miranda. Z. Indukt. Abstammungs-Vererbungsl. 72: 88-113.
    • (1936) Z. Indukt. Abstammungs-Vererbungsl. , vol.72 , pp. 88-113
    • Dobzhansky, T.1    Tan, C.C.2
  • 16
    • 0029559462 scopus 로고
    • Coalescents and genealogical structure under neutrality
    • DONNELLY, P., and S. TAVARÉ, 1995 Coalescents and genealogical structure under neutrality. Annu. Rev. Genet. 29: 401-421.
    • (1995) Annu. Rev. Genet. , vol.29 , pp. 401-421
    • Donnelly, P.1    Tavaré, S.2
  • 17
    • 5344241252 scopus 로고    scopus 로고
    • Genetic analysis of complex demographic scenarios: Spatially expanding populations for the cane toad, Bufo marinus
    • ESTOUP, A., M. A. BEAUMONT, F. SENNEDOT, C. MORITZ and J.-M. CORNUET, 2004 Genetic analysis of complex demographic scenarios: spatially expanding populations for the cane toad, Bufo marinus. Evolution 58: 2021-2036.
    • (2004) Evolution , vol.58 , pp. 2021-2036
    • Estoup, A.1    Beaumont, M.A.2    Sennedot, F.3    Moritz, C.4    Cornuet, J.-M.5
  • 18
    • 0015310384 scopus 로고
    • The sampling theory of selectively neutral alleles
    • EWENS, W. J., 1972 The sampling theory of selectively neutral alleles. Theor. Popul. Biol. 3: 87-112.
    • (1972) Theor. Popul. Biol. , vol.3 , pp. 87-112
    • Ewens, W.J.1
  • 19
    • 0026682501 scopus 로고
    • Estimating effective population size from samples of sequences: Inefficiency of pairwise and segregation sites as compared to phylogenetic estimates
    • FELSENSTEIN, J., 1992 Estimating effective population size from samples of sequences: inefficiency of pairwise and segregation sites as compared to phylogenetic estimates. Genet. Res. 59: 139-147.
    • (1992) Genet. Res. , vol.59 , pp. 139-147
    • Felsenstein, J.1
  • 20
    • 0001947091 scopus 로고    scopus 로고
    • Likelihoods on coalescents: A Monte Carlo sampling approach to inferring parameters from population samples of molecular data
    • edited by F. SEILLIER-MOISEIWITSCH. Institute of Mathematical Statistics and American Mathematics Society, Haywood, CA
    • FELSENSTEIN, J., M. K. KUHNER, J. YAMATO and P. BEERLI, 1999 Likelihoods on coalescents: a Monte Carlo sampling approach to inferring parameters from population samples of molecular data, pp. 163-185 in Statistics in Molecular Biology and Genetics, edited by F. SEILLIER-MOISEIWITSCH. Institute of Mathematical Statistics and American Mathematics Society, Haywood, CA.
    • (1999) Statistics in Molecular Biology and Genetics , pp. 163-185
    • Felsenstein, J.1    Kuhner, M.K.2    Yamato, J.3    Beerli, P.4
  • 21
    • 0029391126 scopus 로고
    • Statistical properties of segregating sites
    • FU, Y.-X., 1995 Statistical properties of segregating sites. Theor. Popul. Biol. 48: 172-197.
    • (1995) Theor. Popul. Biol. , vol.48 , pp. 172-197
    • Fu, Y.-X.1
  • 22
    • 0031038941 scopus 로고    scopus 로고
    • Estimating the age of the common ancestor of a sample of DNA sequences
    • FU, Y.-X., and W.-H. LI, 1997 Estimating the age of the common ancestor of a sample of DNA sequences. Mol. Biol. Evol. 14: 195-199.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 195-199
    • Fu, Y.-X.1    Li, W.-H.2
  • 23
    • 0035049521 scopus 로고    scopus 로고
    • Genome-scale compositional comparisons in eukaryotes
    • GENTLES, A. J., and S. KARLIN, 2001 Genome-scale compositional comparisons in eukaryotes. Genome Res. 11: 540-546.
    • (2001) Genome Res. , vol.11 , pp. 540-546
    • Gentles, A.J.1    Karlin, S.2
  • 24
    • 34548452457 scopus 로고
    • Simulating probability distributions in the coalescent
    • GRIFFITHS, R. C., and S. TAVARÉ, 1994 Simulating probability distributions in the coalescent. Theor. Popul. Biol. 46: 131-159.
    • (1994) Theor. Popul. Biol. , vol.46 , pp. 131-159
    • Griffiths, R.C.1    Tavaré, S.2
  • 25
    • 0001129760 scopus 로고    scopus 로고
    • Monte Carlo inference methods in population genetics
    • GRIFFITHS, R. C., and S. TAVARÉ, 1996 Monte Carlo inference methods in population genetics. Math. Comput. Model. 23: 141-158.
    • (1996) Math. Comput. Model. , vol.23 , pp. 141-158
    • Griffiths, R.C.1    Tavaré, S.2
  • 26
    • 20444406878 scopus 로고    scopus 로고
    • Bayesian estimation of recent migration rates after a spatial expansion
    • HAMILTON, G., M. CURRAT, N. RAY, G. HECKEL, M. A. BEAUMONT et al., 2005 Bayesian estimation of recent migration rates after a spatial expansion. Genetics 170: 409-417.
    • (2005) Genetics , vol.170 , pp. 409-417
    • Hamilton, G.1    Currat, M.2    Ray, N.3    Heckel, G.4    Beaumont, M.A.5
  • 27
    • 0037803577 scopus 로고    scopus 로고
    • The study of structured populations - New hope for a difficult and divided science
    • HEY, J., and C. A. MACHADO, 2003 The study of structured populations - new hope for a difficult and divided science. Nat. Rev. Genet. 4: 535-543.
    • (2003) Nat. Rev. Genet. , vol.4 , pp. 535-543
    • Hey, J.1    Machado, C.A.2
  • 28
    • 3142714474 scopus 로고    scopus 로고
    • Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis
    • HEY, J., and R. NIELSEN, 2004 Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis. Genetics 167: 747-760.
    • (2004) Genetics , vol.167 , pp. 747-760
    • Hey, J.1    Nielsen, R.2
  • 29
    • 0000601292 scopus 로고
    • The how and why of generating gene genealogies
    • edited by N. TAKAHATA and A. G. CLARK. Sinauer, Sunderland, MA
    • HUDSON, R. R., 1993 The how and why of generating gene genealogies, pp. 23-36 in Mechanisms of Molecular Evolution, edited by N. TAKAHATA and A. G. CLARK. Sinauer, Sunderland, MA.
    • (1993) Mechanisms of Molecular Evolution , pp. 23-36
    • Hudson, R.R.1
  • 30
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • HUELSENBECK, J. P., and F. RONQUIST, 2001 MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 31
    • 12344314451 scopus 로고    scopus 로고
    • A simple hierarchical approach to modeling distributions of substitution rates
    • KOSAKOVSKY POND, S. L., and S. D. W. FROST, 2005 A simple hierarchical approach to modeling distributions of substitution rates. Mol. Biol. Evol. 22: 223-234.
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 223-234
    • Kosakovsky Pond, S.L.1    Frost, S.D.W.2
  • 32
    • 0029027992 scopus 로고
    • Estimating effective population size and mutation rate from sequence data using Metropolis-Hastings sampling
    • KUHNER, M. K., J. YAMATO and J. FELSENSTEIN, 1995 Estimating effective population size and mutation rate from sequence data using Metropolis-Hastings sampling. Genetics 140: 1421-1430.
    • (1995) Genetics , vol.140 , pp. 1421-1430
    • Kuhner, M.K.1    Yamato, J.2    Felsenstein, J.3
  • 33
    • 0031835126 scopus 로고    scopus 로고
    • Maximum-likelihood estimation of population growth rates based on the coalescent
    • KUHNER, M. K., J. YAMATO and J. FELSENSTEIN, 1998 Maximum-likelihood estimation of population growth rates based on the coalescent. Genetics 149: 429-434.
    • (1998) Genetics , vol.149 , pp. 429-434
    • Kuhner, M.K.1    Yamato, J.2    Felsenstein, J.3
  • 35
    • 0036215045 scopus 로고    scopus 로고
    • Inferring the history of speciation from multilocus DNA sequence data: The case of Drosophila pseudoobscura and close relatives
    • MACHADO, C. A., R. M. KLIMAN, J. A. MARKERT and J. HEY, 2002 Inferring the history of speciation from multilocus DNA sequence data: the case of Drosophila pseudoobscura and close relatives. Mol. Biol. Evol. 19: 472-488.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 472-488
    • Machado, C.A.1    Kliman, R.M.2    Markert, J.A.3    Hey, J.4
  • 38
    • 0030951291 scopus 로고    scopus 로고
    • Recombination and gene flux caused by gene conversion and crossing over in inversion heterozygotes
    • NAVARRO, A., E. BETRÁN, A. BARBADILLA and A. RUIZ, 1997 Recombination and gene flux caused by gene conversion and crossing over in inversion heterozygotes. Genetics 146: 695-709.
    • (1997) Genetics , vol.146 , pp. 695-709
    • Navarro, A.1    Betrán, E.2    Barbadilla, A.3    Ruiz, A.4
  • 39
    • 0035400648 scopus 로고    scopus 로고
    • Gene trees and species trees are not the same
    • NICHOLS, R., 2001 Gene trees and species trees are not the same. Trends Ecol. Evol. 16: 358-364.
    • (2001) Trends Ecol. Evol. , vol.16 , pp. 358-364
    • Nichols, R.1
  • 40
    • 0032051440 scopus 로고    scopus 로고
    • Maximum likelihood estimation of population divergence times and population phylogenies under the infinite sites model
    • NIELSEN, R., 1998 Maximum likelihood estimation of population divergence times and population phylogenies under the infinite sites model. Theor. Popul. Biol. 53: 143-151.
    • (1998) Theor. Popul. Biol. , vol.53 , pp. 143-151
    • Nielsen, R.1
  • 41
    • 0034967295 scopus 로고    scopus 로고
    • Distinguishing migration from isolation: A Markov chain Monte Carlo approach
    • NIELSEN, R., and J. WAKELEY, 2001 Distinguishing migration from isolation: a Markov chain Monte Carlo approach. Genetics 158: 885-896.
    • (2001) Genetics , vol.158 , pp. 885-896
    • Nielsen, R.1    Wakeley, J.2
  • 42
    • 0034100370 scopus 로고    scopus 로고
    • Recombination, statistical power, and genetic studies of sexual isolation in Drosophila
    • NOOR, M. A. F., and K. R. SMITH, 2000 Recombination, statistical power, and genetic studies of sexual isolation in Drosophila. J. Hered. 91: 99-103.
    • (2000) J. Hered. , vol.91 , pp. 99-103
    • Noor, M.A.F.1    Smith, K.R.2
  • 43
    • 0034923452 scopus 로고    scopus 로고
    • The genetics of reproductive isolation and the potential for gene exchange between Drosophila pseudoobscura and D. persimilis via backcross hybrid males
    • NOOR, M. A. F., K. L. GRAMS, L. A. BERTUCCI, Y. ALMENDAREZ, J. REILAND et al., 2001a The genetics of reproductive isolation and the potential for gene exchange between Drosophila pseudoobscura and D. persimilis via backcross hybrid males. Evolution 55: 512-521.
    • (2001) Evolution , vol.55 , pp. 512-521
    • Noor, M.A.F.1    Grams, K.L.2    Bertucci, L.A.3    Almendarez, Y.4    Reiland, J.5
  • 44
    • 0035833999 scopus 로고    scopus 로고
    • Chromosomal inversions and reproductive isolation of species
    • USA
    • NOOR, M. A. F., K. L. GRAMS, L. A. BERTUCCI and J. REILAND, 2001b Chromosomal inversions and reproductive isolation of species. Proc. Natl. Acad. Sci. USA 98: 12084-12088.
    • (2001) Proc. Natl. Acad. Sci. , vol.98 , pp. 12084-12088
    • Noor, M.A.F.1    Grams, K.L.2    Bertucci, L.A.3    Reiland, J.4
  • 45
    • 2442612992 scopus 로고    scopus 로고
    • Efficiencies of maximum likelihood methods of phylogenetic inferences when different substitution models are used
    • PIONTKIVSKA, H., 2004 Efficiencies of maximum likelihood methods of phylogenetic inferences when different substitution models are used. Mol. Phylogenet. Evol. 31: 865-873.
    • (2004) Mol. Phylogenet. Evol. , vol.31 , pp. 865-873
    • Piontkivska, H.1
  • 46
    • 0032735986 scopus 로고    scopus 로고
    • Population growth of human Y chromosomes: A study of Y chromosome microsatellites
    • PRITCHARD, J. K., M. T. SEIELSTAD, A. PEREZ-LEZAUN and M. W. FELDMAN, 1999 Population growth of human Y chromosomes: a study of Y chromosome microsatellites. Mol. Biol. Evol. 16: 1791-1798.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 1791-1798
    • Pritchard, J.K.1    Seielstad, M.T.2    Perez-Lezaun, A.3    Feldman, M.W.4
  • 47
    • 0041817551 scopus 로고    scopus 로고
    • Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci
    • RANNALA, B., and Z. YANG, 2003 Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci. Genetics 164: 1645-1656.
    • (2003) Genetics , vol.164 , pp. 1645-1656
    • Rannala, B.1    Yang, Z.2
  • 48
    • 0001486658 scopus 로고    scopus 로고
    • The relationship between coalescence times and population divergence times
    • edited by M. SLATKIN and M. VEUILLE. Oxford University Press, Oxford
    • ROSENBERG, N. A., and M. W. FELDMAN, 2002 The relationship between coalescence times and population divergence times, pp. 130-164 in Modern Developments in Theoretical Population Genetics - The Legacy of Gustave Malécot, edited by M. SLATKIN and M. VEUILLE. Oxford University Press, Oxford.
    • (2002) Modern Developments in Theoretical Population Genetics - The Legacy of Gustave Malécot , pp. 130-164
    • Rosenberg, N.A.1    Feldman, M.W.2
  • 49
    • 0002873966 scopus 로고
    • Population genetics in Drosophila pseudoobscura: A synthesis based on nucleotide sequence data for the Adh gene
    • edited by L. LEVINE. Columbia University Press, New York
    • SCHAEFFER, S. W., 1995 Population genetics in Drosophila pseudoobscura: a synthesis based on nucleotide sequence data for the Adh gene, pp. 329-352 in Genetics of Natural Populations: The Continuing Importance of Theodosius Dobzhansky, edited by L. LEVINE. Columbia University Press, New York.
    • (1995) Genetics of Natural Populations: The Continuing Importance of Theodosius Dobzhansky , pp. 329-352
    • Schaeffer, S.W.1
  • 50
    • 0026050476 scopus 로고
    • Inbreeding coefficients and coalescence times
    • SLATKIN, M., 1991 Inbreeding coefficients and coalescence times. Genet. Res. 58: 167-175.
    • (1991) Genet. Res. , vol.58 , pp. 167-175
    • Slatkin, M.1
  • 51
    • 0031025214 scopus 로고    scopus 로고
    • Estimating the age of alleles by use of intraallelic variability
    • SLATKIN, M., and B. RANNALA, 1997 Estimating the age of alleles by use of intraallelic variability. Am. J. Hum. Genet. 60: 447-458.
    • (1997) Am. J. Hum. Genet. , vol.60 , pp. 447-458
    • Slatkin, M.1    Rannala, B.2
  • 54
    • 0002242481 scopus 로고    scopus 로고
    • Inference under the coalescent
    • edited by D. J. BALDING, M. J. BISHOP and C. CANNINGS. John Wiley & Sons, Chichester, UK
    • STEPHENS, M., 2001 Inference under the coalescent, pp. 213-238 in Handbook of Statistical Genetics, edited by D. J. BALDING, M. J. BISHOP and C. CANNINGS. John Wiley & Sons, Chichester, UK.
    • (2001) Handbook of Statistical Genetics , pp. 213-238
    • Stephens, M.1
  • 55
    • 0034354581 scopus 로고    scopus 로고
    • Inference in molecular population genetics
    • STEPHENS, M., and P. DONNELLY, 2000 Inference in molecular population genetics. J. R. Stat. Soc. B 62: 605-635.
    • (2000) J. R. Stat. Soc. B , vol.62 , pp. 605-635
    • Stephens, M.1    Donnelly, P.2
  • 56
    • 0038781903 scopus 로고    scopus 로고
    • Neutral substitutions occur at a faster rate in exons than in noncoding DNA in primate genomes
    • SUBRAMANIAN, S., and S. KUMAR, 2003 Neutral substitutions occur at a faster rate in exons than in noncoding DNA in primate genomes. Genome Res. 13: 838-844.
    • (2003) Genome Res. , vol.13 , pp. 838-844
    • Subramanian, S.1    Kumar, S.2
  • 57
    • 0025299347 scopus 로고
    • The expected equilibrium of the CpG dinucleotide in vertebrate genomes under a mutation model
    • USA
    • SVED, J., and A. BIRD, 1990 The expected equilibrium of the CpG dinucleotide in vertebrate genomes under a mutation model. Proc. Natl. Acad. Sci. USA 87: 4692-4696.
    • (1990) Proc. Natl. Acad. Sci. , vol.87 , pp. 4692-4696
    • Sved, J.1    Bird, A.2
  • 58
    • 0033854992 scopus 로고    scopus 로고
    • Efficiencies of fast algorithms of phylogenetic inference underthe criteria of maximum parsimony, minimum evolution, and maximum likelihood when a large number of sequences are used
    • TAKAHASHI, K., and M. NEI, 2000 Efficiencies of fast algorithms of phylogenetic inference underthe criteria of maximum parsimony, minimum evolution, and maximum likelihood when a large number of sequences are used. Mol. Biol. Evol. 17: 1251-1258.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 1251-1258
    • Takahashi, K.1    Nei, M.2
  • 59
    • 0013272874 scopus 로고    scopus 로고
    • Pre-speciation coalescence and the effective size of ancestral populations
    • edited by M. SLATKIN and M. VEUILLE. Oxford University Press, Oxford
    • TAKAHATA, N., and Y. SATTA, 2002 Pre-speciation coalescence and the effective size of ancestral populations, pp. 52-71 in Modern Developments in Theoretical Population Genetics - The Legacy of Gustave Malécot, edited by M. SLATKIN and M. VEUILLE. Oxford University Press, Oxford.
    • (2002) Modern Developments in Theoretical Population Genetics - The Legacy of Gustave Malécot , pp. 52-71
    • Takahata, N.1    Satta, Y.2
  • 60
    • 0029415835 scopus 로고
    • Divergence time and population size in the lineage leading to modern humans
    • TAKAHATA, N., Y. SATTA and J. KLEIN, 1995 Divergence time and population size in the lineage leading to modern humans. Theor. Popul. Biol. 48: 198-221.
    • (1995) Theor. Popul. Biol. , vol.48 , pp. 198-221
    • Takahata, N.1    Satta, Y.2    Klein, J.3
  • 61
    • 4644276942 scopus 로고    scopus 로고
    • Maximum-likelihood estimation of rates of recombination within mating-type regions
    • TAKEBAYASHI, N., E. NEWBIGIN and M. K. UYENOYAMA, 2004 Maximum-likelihood estimation of rates of recombination within mating-type regions. Genetics 167: 2097-2109.
    • (2004) Genetics , vol.167 , pp. 2097-2109
    • Takebayashi, N.1    Newbigin, E.2    Uyenoyama, M.K.3
  • 62
    • 3142749747 scopus 로고    scopus 로고
    • Quantitative evaluation of a new effective population size estimator based on approximate Bayesian computation
    • TALLMON, D. A., G. LUIKART and M. A. BEAUMONT, 2004 Quantitative evaluation of a new effective population size estimator based on approximate Bayesian computation. Genetics 167: 977-988.
    • (2004) Genetics , vol.167 , pp. 977-988
    • Tallmon, D.A.1    Luikart, G.2    Beaumont, M.A.3
  • 63
    • 1242352089 scopus 로고    scopus 로고
    • Temporal patterns of fruit fly (Drosophila) evolution revealed by mutation clocks
    • TAMURA, K., S. SUBRAMANIAN and S. KUMAR, 2004 Temporal patterns of fruit fly (Drosophila) evolution revealed by mutation clocks. Mol. Biol. Evol. 21: 36-44.
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 36-44
    • Tamura, K.1    Subramanian, S.2    Kumar, S.3
  • 64
  • 65
    • 0027968068 scopus 로고
    • CLUSTALW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • THOMPSON, J. D., D. G. HIGGINS and T. J. GIBSON, 1994 CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 67
    • 1842711798 scopus 로고    scopus 로고
    • A simple method for computing exact probabilities of mutation numbers
    • UYENOYAMA, M. K., and N. TAKEBAYASHI, 2004 A simple method for computing exact probabilities of mutation numbers. Theor. Popul. Biol. 65: 271-284.
    • (2004) Theor. Popul. Biol. , vol.65 , pp. 271-284
    • Uyenoyama, M.K.1    Takebayashi, N.2
  • 68
    • 0031018637 scopus 로고    scopus 로고
    • Estimating ancestral population parameters
    • WAKELEY, J., and J. HEY, 1997 Estimating ancestral population parameters. Genetics 145: 847-855.
    • (1997) Genetics , vol.145 , pp. 847-855
    • Wakeley, J.1    Hey, J.2
  • 69
    • 0035205317 scopus 로고    scopus 로고
    • The discovery of single-nucleotide polymorphisms - And inferences about human demographic history
    • WAKELEY, J., R. NIELSEN, S. N. LIU-CORDERO and K. ARDLIE, 2001 The discovery of single-nucleotide polymorphisms - and inferences about human demographic history. Am. J. Hum. Genet. 69: 1332-1347.
    • (2001) Am. J. Hum. Genet. , vol.69 , pp. 1332-1347
    • Wakeley, J.1    Nielsen, R.2    Liu-Cordero, S.N.3    Ardlie, K.4
  • 70
    • 0037277564 scopus 로고    scopus 로고
    • Estimating ancestral population sizes and divergence times
    • WALL, J. D., 2003 Estimating ancestral population sizes and divergence times. Genetics 163: 395-404.
    • (2003) Genetics , vol.163 , pp. 395-404
    • Wall, J.D.1
  • 71
    • 0034984837 scopus 로고    scopus 로고
    • Coalescent simulations and statistical tests of neutrality
    • WALL, J. D., and R. R. HUDSON, 2001 Coalescent simulations and statistical tests of neutrality. Mol. Biol. Evol. 18: 1134-1135.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1134-1135
    • Wall, J.D.1    Hudson, R.R.2
  • 72
    • 0036743513 scopus 로고    scopus 로고
    • Testing models of selection and demography in Drosophila simulans
    • WALL, J. D., P. ANDOLFATTO and M. PRZEWORSKI, 2002 Testing models of selection and demography in Drosophila simulans. Genetics 162: 203-216.
    • (2002) Genetics , vol.162 , pp. 203-216
    • Wall, J.D.1    Andolfatto, P.2    Przeworski, M.3
  • 73
    • 0003243515 scopus 로고    scopus 로고
    • Gene flow and natural selection in the origin of Drosophila pseudoobscura and close relatives
    • WANG, R. L., J. WAKELEY and J. HEY, 1997 Gene flow and natural selection in the origin of Drosophila pseudoobscura and close relatives. Genetics 147: 1091-1106.
    • (1997) Genetics , vol.147 , pp. 1091-1106
    • Wang, R.L.1    Wakeley, J.2    Hey, J.3
  • 74
    • 0016491430 scopus 로고
    • On the number of segregating sites in genetical models without recombination
    • WATTERSON, G. A., 1975 On the number of segregating sites in genetical models without recombination. Theor. Popul. Biol. 7: 256-276.
    • (1975) Theor. Popul. Biol. , vol.7 , pp. 256-276
    • Watterson, G.A.1
  • 75
    • 0000641591 scopus 로고
    • The genetic divergence of two populations
    • WATTERSON, G. A., 1985 The genetic divergence of two populations. Theor. Popul. Biol. 27: 298-317.
    • (1985) Theor. Popul. Biol. , vol.27 , pp. 298-317
    • Watterson, G.A.1
  • 76
    • 0031827528 scopus 로고    scopus 로고
    • Inference of population history using a likelihood approach
    • WEISS, G., and A. VON HAESELER, 1998 Inference of population history using a likelihood approach. Genetics 149: 1539-1546.
    • (1998) Genetics , vol.149 , pp. 1539-1546
    • Weiss, G.1    Von Haeseler, A.2
  • 77
    • 0031669749 scopus 로고    scopus 로고
    • Genealogical inference from microsatellite data
    • WILSON, I. J., and D. J. BALDING, 1998 Genealogical inference from microsatellite data. Genetics 150: 499-510.
    • (1998) Genetics , vol.150 , pp. 499-510
    • Wilson, I.J.1    Balding, D.J.2
  • 78
    • 0037503021 scopus 로고    scopus 로고
    • Inferences from DNA data: Population histories, evolutionary processes and forensic match probabilities
    • WILSON, I. J., M. E. WEALE and D. J. BALDING, 2003 Inferences from DNA data: population histories, evolutionary processes and forensic match probabilities. J. R. Stat. Soc. A 166: 155-201.
    • (2003) J. R. Stat. Soc. A , vol.166 , pp. 155-201
    • Wilson, I.J.1    Weale, M.E.2    Balding, D.J.3
  • 79
    • 0642378036 scopus 로고    scopus 로고
    • Inferring population history from genealogical trees
    • WIUF, C., 2003 Inferring population history from genealogical trees. J. Math. Biol. 46: 241-264.
    • (2003) J. Math. Biol. , vol.46 , pp. 241-264
    • Wiuf, C.1
  • 80
    • 0033213012 scopus 로고    scopus 로고
    • Conditional genealogies and the age of a neutral mutant
    • WIUF, C., and P. DONNELLY, 1999 Conditional genealogies and the age of a neutral mutant. Theor. Popul. Biol. 56: 183-201.
    • (1999) Theor. Popul. Biol. , vol.56 , pp. 183-201
    • Wiuf, C.1    Donnelly, P.2
  • 81
    • 0029970097 scopus 로고    scopus 로고
    • Maximum-likelihood models for combined analyses of multiple sequence data
    • YANG, Z., 1996 Maximum-likelihood models for combined analyses of multiple sequence data. J. Mol. Evol. 42: 587-596.
    • (1996) J. Mol. Evol. , vol.42 , pp. 587-596
    • Yang, Z.1


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