Multiplexed SNP genotyping using nanobarcode particle technology

Analytical and Bioanalytical Chemistry

Volumn 384, Issue 3, 2006, Pages 658-666

  Sha, Michael Y ^a   Walton, Ian D ^a   Norton, Scott M ^a   Taylor, Micah ^a   Yamanaka, Mark ^a   Natan, Michael J ^a   Xu, Chongjun ^b   Drmanac, Snezana ^b   Huang, Steve ^b   Borcherding, Adam ^b   Drmanac, Radoje ^b   Penn, Sharron G ^a  

^a Nanoplex Technologies Inc   (United States)

^b Callida Genomics   (United States)

Author keywords

Cytochrome P450; Encoded particles; Nanotechnology; Nanowires; SNP genotyping

Indexed keywords

CYTOCHROME P450; ENCODED PARTICLES; NANOWIRES; SNP GENOTYPING;

DNA; ELECTROPLATING; GENES; GOLD; MULTIPLEXING; SILVER; STRIP METAL;

NANOTECHNOLOGY;

DNA; NANOPARTICLE; NANOTUBE;

ARTICLE; CHEMISTRY; GENETICS; GENOTYPE; HUMAN; METHODOLOGY; NANOTECHNOLOGY; POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; SINGLE NUCLEOTIDE POLYMORPHISM;

DNA; GENOTYPE; HUMANS; NANOPARTICLES; NANOTECHNOLOGY; NANOTUBES; POLYMERASE CHAIN REACTION; POLYMORPHISM, SINGLE NUCLEOTIDE; SENSITIVITY AND SPECIFICITY;

EID: 32544444286     PISSN: 16182642     EISSN: 16182650     Source Type: Journal    
DOI: 10.1007/s00216-005-0225-0     Document Type: Article

References (32)

1. Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, Sutton GG, Smith HO, Yandell M, Evans CA, Holt RA, Gocayne JD, Amanatides P, Ballew RM, Huson DH, Wortman JR, Zhang Q, Kodira CD, Zheng XH, Chen L, Skupski M, Subramanian G, Thomas PD, Zhang J, Gabor Miklos GL, Nelson C, Broder S, Clark AG, Nadeau J, McKusick VA, Zinder N, Levine AJ, Roberts RJ, Simon M, Slayman C, Hunkapiller M, Bolanos R, Delcher A, Dew I, Fasulo D, Flanigan M, Florea L, Halpern A, Hannenhalli S, Kravitz S, Levy S, Mobarry C, Reinert K, Remington K, Abu-Threideh J, Beasley E, Biddick K, Bonazzi V, Brandon R, Cargill M, Chandramouliswaran I, Cliarlab R, Chaturvedi K., Deng Z, Francesco VD, Dunn P, Eilbeck K, Evangelista C, Gabrielian AE, Gan W, Ge W, Gong F, Gu Z, Guan P, Heiman TJ, Higgins ME, Ji RR, Ke Z, Ketchum KA, Lai Z, Lei Y, Li Z, Li J, Liang Y, Lin X, Lu F, Merkulov GV, Milshina N, Moore HM, Naik AK, Narayan VA, Neelam B, Nusskern D, Rusch DB, Salzberg S, Shao W, Shue B, Sun J, Wang ZY, Wang A, Wang X, Wang J, Wei MH, Wides R, Xiao C, Yan C, Yao A, Ye J, Zhan M, Zhang W, Zhang H, Zhao Q, Zheng L, Zhong F, Zhong W, Zhu SC, Zhao S, Gilbert D, Baumhueter S, Spier G, Carter C, Cravchik A, Woodage T, Ali F, An H, Awe A, Baldwin D, Baden H, Barnstead M, Barrow I, Beeson K, Busam D, Carver A, Center A, Cheng ML, Curry L, Danaher S, Davenport L, Desilets R, Dietz S, Dodson K., Doup L, Fernere S, Garg N, Gluecksmann A, Hart B, Haynes J, Haynes C, Heiner C, Hladun S, Hostin D, Houck J, Howland T, Ibegwam C, Johnson J, Kalush F, Kline L, Koduru S, Love A, Mann F, May D, McCawley S, Mclntosh T, McMullen I, Moy M, Moy L, Murphy B, Nelson K, Pfannkoch C, Pratts E, Puri V, Qureshi H, Reardon M, Rodriguez R, Rogers YH, Romblad D, Ruhfel B, Scott R, Sitter C, Smallwood M, Stewart E, Strong R, Suh E, Thomas R, Tint NN, Tse S, Vech C, Wang G, Wetter J, Williams S, Williams M, Windsor S, Winn-Deen E, Wolfe K, Zaveri J, Zaveri K, Abril JF, Guigo R, Campbell MJ, Sjolander KV, Karlak B, Kejariwal A, Mi H, Lazareva B, Hatton T, Narechania A, Diemer K, Muruganujan A, Guo N, Sato S, Bafna V, Istrail S, Lippert R, Schwartz R, Walenz B, Yooseph S, Allen D, Basu A, Baxendale J, Blick L, Caminha M, Carnes-Stine J, Caulk P, Chiang YH, Coyne M, Dahlke C, Mays AD, Dombroski M, Donnelly M, Ely D, Esparham S, Fosler C, Gire H, Glanowski S, Classer K, Glodek A, Gorokhov M, Graham K, Gropman B, Harris M, Heil J, Henderson S, Hoover J, Jennings D, Jordan C, Jordan J, Kasha J, Kagan L, Kraft C, Levitsky A, Lewis M, Liu X, Lopez J, Ma D, Majoras W, McDaniel J, Murphy S, Newman M, Nguyen T, Nguyen N, and Nodell M (2001) Science 291:1304-1351
2. Morgan MJ (2001) Nature 409:860-921
3. Gilman B, Schaffner S, Van Etten WJ, Reich D, Higgins J, Daly MJ, Blumenstiel B, Baldwin J, Stange-Thomann N, Zody MC, Linton L, Lander ES, Altshuler D (2001) Nature 409:928-933
4. Kwok PY, Chen X (2003) Gurr Issues Mol Bio 5:43-60
5. Brennan MD (2001) Am J Pharmacogenomics 1:295-302
6. Twyman RM (2004) Curr Top Med Chem 4:1423-1431
7. Dearlove AM (2002) Brief Funct Genomic Proteomic 1:139-150
8. Chen J, lannone MA, Li MS, Taylor JD, Rivers P, Nelsen AJ, Slentz-Kesler KA, Roses A, Weiner MP (2000) Genome Res 10:549-557
9. Taylor JD, Briley D, Nguyen Q, Long K, lannone MA, Li MS, Ye F, Afshari A, Lai E, Wagner M, Chen J, Weiner MP (2001) Biotechniques 30:661-669
10. Ye F, Li MS, Taylor JD, Nguyen Q, Colton HM, Casey WM, Wagner M, Weiner MP, Chen J (2001) Human Mutat 17:305-316
11. Landegren U, Kaiser R, Sanders J, Hood L (1988) Science 241:1077-1088
12. lannone MA, Taylor JD, Chen J, Li MS, Rivers P, Slentz-Kesler KA, Weiner MP (2000) Cytometry 39:131-140
13. Xu H, Sha M-Y, Wang E, Uphoff J, Xu Y, Treadway J, Truong A, O'Brien E, Asquith S, Stubbins M, Spurr N, Lai E, Mahoney WC (2003) Nucleic Acids Res. 31:e43
14. Barker DL, Hansen MST, Faruqi AF, Giannola D, Irsula OR, Lasken RS, Latterich M, Makarov V, Oliphant A, Pinter JH, Shen R, Sleptsova I, Ziehler W, Lai E (2004) Genome Res. 14:901-907
15. Gunderson KL, Kruglyak S, Graige MS, Garcia F, Kermani BG, Zhao C, Che D, Dickinson T, Wickham E, Bierle J, Doucet D, Milewski M, Yang R, Siegmund C, Haas J, Zhou L, Oliphant A, Fan JB, Barnard S, Chee MS (2004) Genome Res 14:870-877
16. Evans M, Sewter C, Hill E (2004) Assay Drug Dev Technol 1:199-207
17. Penn SO, He L, Natan MJ (2003) Curr Opin Chem Biol 7:609-615
18. Drmanac R, Drmanac S, Chui G, Diaz R, Hou A, Jin H, Jin P, Kwon S, Lacy S, Moeur B, Shafto J, Swanson D, Ukrainczyk T, Xu C, Little D (2002) Advances in Biochemical Engineering/Biotechnology. Springer, Berlin Heidelberg New York
19. Nicewarner-Pena SR, Freeman G, Reiss BD, He L, Pena DJ, Walton ID, Cromer R, Keating CD, Natan MJ (2001) Science 294:137-141
20. Reiss BD, Keating CD, Freeman RG, Walton ID, Norton SM, Smith PC, Stones WG, Natan MJ (2002) J Electroanal Chem 522:95-103
21. Walton ID, Norton SM, Balasingham A, He L, Oviso DFJ, Gupta D, Raju PA, Natan MJ, Freeman RG (2002) Anal Chem 74:2240-2247
22. Thomas FJ, McLeod HL, Watters JW (2004) Curr Top Med Chem 4:1399-1409
23. Gura T (2001) Science 293:595
24. Erichsen HC, Chanock SJ (2004) Br J Cancer 90:747-751
25. Danielson PB (2002) Curr Drug Metab 3:561-597
26. Pickering JW, McMillen GA, Gedge F, Hill HR, Lyon E (2004) Am J Pharmacogenomics 4:199-207
27. Lai E (2001) Genome Res 11:927-929
28. Finkel NH, Lou X, Wang C, He L (2004) Anal Chem 76:352A-359A
29. Chen J, lannone MA, Li MS, Taylor JD, Rivers P, Nelsen AJ, Slentz-Kesler KA, Roses A, Weiner MP (2000) Genome Res 10:549-557
30. Hardenbol P, Baner J, Jain M, Nilsson M, Namsaraev EA, Karlin-Neumann GA, Fakhrai-Rad H, Ronaghi M, Willis TD, Landegren U, Davis RW (2003) Nature Biotechnology 21: 673-678
31. van Eijk MJT, Broekhof JLN, van der Poel HJA, Hogers RCJ, Schneiders H, Kamerbeek J, Verstege E, van Aart JW, Geerlings H, Buntjer JB, van Oeveren AJ, Vos P (2004) Nucl Acids Res 32:e47
32. Barker DL, Hansen MST, Faruqi AF, Giannola D, Irsula OR, Lasken RS, Latterich M, Makarov V, Oliphant A, Pinter JH, Shen R, Sleptsova I, Ziehler W, Lai E (2004) Genome Res 14:901-907