Phylogeographical patterns in the American Pacific Northwest: Lessons from the arionid slug Prophysaon coeruleum

Molecular Ecology

Volumn 13, Issue 8, 2004, Pages 2303-2315

  Wilke, T ^a   Duncan, N ^b  

^a JUSTUS LIEBIG UNIVERSITY   (Germany)

^b Bureau of Land Management   (United States)

Author keywords

American Pacific Northwest; Arionidae; Genealogical concordance; mtDNA; Phylogeography; Prophysaon

Indexed keywords

MITOCHONDRIAL DNA;

ANALYSIS OF VARIANCE; ANIMAL; ARTICLE; BAYES THEOREM; BIOLOGICAL MODEL; COMPARATIVE STUDY; DNA SEQUENCE; GENETIC POLYMORPHISM; GENETICS; GEOGRAPHY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PHYSIOLOGY; PIGMENTATION; SNAIL; TIME; UNITED STATES;

ANALYSIS OF VARIANCE; ANIMALS; BASE SEQUENCE; BAYES THEOREM; DNA, MITOCHONDRIAL; GEOGRAPHY; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; NORTHWESTERN UNITED STATES; PHENOTYPE; PHYLOGENY; PIGMENTATION; POLYMORPHISM, GENETIC; SEQUENCE ANALYSIS, DNA; SNAILS; TIME FACTORS;

ANIMALIA; ARIONIDAE; GASTROPODA; INVERTEBRATA; PROPHYSAON; PROPHYSAON COERULEUM;

EID: 3242701623     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2004.02234.x     Document Type: Article

References (58)

1. Albonico R (1948) Die Farbenvarietäten der grossen Wegschnecke, Arion empiricorum Fér., und deren Abhängigkeit von den Umweltbedingungen. Revue Suisse de Zoologie, 55, 347-425.
2. Alfaro ME, Zoller S, Lutzoni F (2003) Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain monte carlo sampling and bootstrapping in assessing phylogenetic confidence. Molecular Biology and Evolution, 20, 255-266.
3. Avise JC (1996) Toward a regional conservation genetics perspective: phylogeography of faunas in the southeastern United States. In: Conservation Genetics: Case Histories from Nature (eds Avise JC, Hamrick JL), pp. 431-470. Chapman & Hall, New York.
4. Avise JC (2000) PhyloGeography: the History and Formation of Species. Harvard University Press, Cambridge, MA.
5. Avise JC, Ball RM (1990) Principles of genealogical concordance in species concepts and biological taxonomy. In: Oxford Surveys in Evolutionary Biology (eds Antonovics J, Futuyma D), pp. 45-67. Oxford University Press, London.
6. Avise JC, Walker D, Johns GC (1998) Speciation durations and Pleistocene effects on vertebrate phylogeography. Proceedings of the Royal Society of London B, 265, 1707-1712.
7. Ballard JWO, Chernoff B, James AC (2002) Divergence of mitochondrial DNA is not corroborated by nuclear DNA, morphology, or behavior in Drosophila simulans. Evolution, 56, 527-545.
8. Boettger CR (1949) Zur Kenntnis der grossen Wegschnecke (Arion s.str.) Deutschlands. Archiv für Molluskenkunde, 78, 169-186.
9. Brown WM, George M, Wilson AC (1979) Rapid evolution of animal mitochondrial DNA. Proceedings of the National Academy of Sciences of the USA, 76, 1967-1971.
10. Brunsfeld SJ, Sullivan J, Soltis DE, Soltis PS (2001) Comparative phylogeography of Northwestern North America: a synthesis. In: Integrating Ecological and Evolutionary Processes in a Spatial Context (eds Silvertown J, Antonovics J), pp. 319-339. Blackwell Science, Oxford.
11. De Rijk P, Robbrecht E, De Hoog S, Caers A, Van De Peer Y, De Wachter R (1999) Database on the structure of large ribosomal subunit RNA. Nucleic Acids Research, 27, 174-178.
12. Demboski JR, Cook JA (2001) Phylogeography of the dusky shrew, Sorex monticolus (Insectivora, Soricidae): insight into deep and shallow history in northwestern North America. Molecular Ecology, 10, 1227-1240.
13. Douady CJ, Delsuc F, Boucher Y, Doolittle WF, Douzery EJP (2003) Comparison of Bayesian and maximum likelihood bootstrap measures of phylogenetic reliability. Molecular Biology and Evolution, 20, 248-254.
14. Dupanloup I, Schneider S, Excoffier L (2002) A simulated annealing approach to define the genetic structure of populations. Molecular Ecology, 11, 2571-2581.
15. Farris JS, Källersjö M, Kluge AG, Bult C (1995) Testing significance of incongruence. Cladistics, 10, 315-319.
16. Folmer O, Black M, Hoeh W, Lutz RA, Vrijenhoek RC (1994) DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology, 3, 294-299.
17. Graham A (1999) Late Cretaceous and Cenozoic History of North American Vegetation. Oxford University Press, New York.
18. Hall TA (1999) BIOEDIT: a user-friendly biological sequence alignment, ed. and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95-98.
19. Hessen DO (1993) DNA-damage and pigmentation in alpine and arctic zooplankton as bioindicators of UV-radiation. Verhandlungen Internationale Vereinigung Limnologie, 25, 482-486.
20. Hessen DO, Sørensen K (1990) Photoprotective pigmentation in alpine zooplankton populations. Aqua Fennica, 20, 165-170.
21. Hewitt GM (1993) Postglacial distribution and species substructures: lessons from pollen, insects and hybrid zones. In: Evolutionary Patterns and Processes (eds Lees DR, Edwards D), pp. 97-123. Academic Press, London.
22. Hewitt GM (2000) The genetic legacy of quaternary ice ages. Nature, 405, 907-913.
23. Hillis DM, Mable BK, Moritz C (1996) Applications of molecular systematics. In: Molecular Systematics, 2nd edn (eds Hillis DM, Moritz C, Mable BK), pp. 515 -543. Sinauer Associates Inc., Sunderland MA.
24. Huelsenbeck JP, Rannala B (1997) Phylogenetic methods come to age: testing hypotheses in an evolutionary context. Science, 276, 227-232.
25. Huelsenbeck JP, Ronquist F (2001) MRBAYES: Bayesian inference of phylogeny. Bioinformatics, 17, 754-755.
26. Kelley R, Dowlan S, Duncan N, Burke T (1999) Field Guide to Survey and Manage Terrestrial Mollusk Species from the Northwest Forest Plan. USDI Bureau of Land Management, Oregon State Office, Portland, OR.
27. Kerney MP, Cameron RAD, Jungbluth JH (1983) Die Landschnecken Nordiska- und Mitteleuropas. Verlag Paul Parey, Hamburg.
28. Kollias N, Sayre RM, Zeise L, Chedekel MR (1991) Photoprotection by melanin. Journal of Photochemistry and Photobiology, 9, 135-160.
29. Koskinen MT, Knizhin I, Primmer CR, Schlötterer C, Weiss S (2002) Mitochondrial and nuclear DNA phylogeography of Thymallus spp. (grayling) provides evidence of ice-age mediated environmental perturbations in the world's oldest body of fresh water, Lake Baikal. Molecular Ecology, 11, 2599-2611.
30. Kumar S, Koichiro K, Jakobsen I, Nei M (2000) MEGA: Molecular evolutionary genetics analysis, Version 2.0. Pennsylvania State University, University Park and Arizona State University, Tempe, AZ.
31. Majerus MEN (1998) Melanism: Evolution in Action. Oxford University Press, Oxford.
32. Merilä J (1997) Quantitative trait and allozyme divergence in the Greenfinch (Carduelis chloris, Aves: Fringillidae). Biological Journal of the Linnean Society, 61, 243-266.
33. Nielson M, Lohman K, Sullivan J (2001) Phylogeography of the tailed frog (Ascaphus truei): Implications for the biogeography of the Pacific Northwest. Evolution, 55, 147-160.
34. Ovaska K, Leonard WP, Chichester L, Burke T, Sopuck L, Baugh J (2004) Prophysaon coeruleum Cockerell, 1890, blue-gray taildropper. Gastropoda: Arionidae): New distributional records and reproductive anatomy. Western North American Naturalist, in press.
35. Palumbi S, Martin A, Romano S, McMillian WO, Stice L, Grabowski G (1991) The Simple Fool's Guide to PCR. University of Hawaii, Honolulu.
36. Posada D, Crandall KA (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics, 14, 817-818.
37. Rambaut A, Grassly NC (1997) Seq-General: an Application for the Monte Carlo Simulation of DNA Sequence Evolution Along Phylogenetic Trees, Version 1.1. Computer Applications in the Biosciences, 13, 235-238.
38. Rautio M, Korhola A (2002) UV-induced pigmentation in subarctic Daphnia. Limnology and Oceanography, 47, 295-299.
39. Roland J (1982) Melanism and diet activity of alpine Colias (Lepidoptera: Pieridae). Oecologia, 53, 214-221.
40. Simmons MP, Pickett KM, Miya M (2004) How meaningful are Bayesian support values? Molecular Biology and Evolution, 21, 188-199.
41. Sirgel WF (1985) A new subfamily of Arionidae (Mollusca, Pulmonata). Annals of the Natal Museum, 26, 471-487.
42. Solus DE, Soltis PS, Ranker TA, Ness BD (1989) Chloroplast DNA variation in a wild plant, Tolmiea menziesii. Genetics, 121, 819-826.
43. Soltis DE, Mayer MS, Soltis PS, Edgerton M (1991) Chloroplast DNA variation in Tellima grandiflora (Saxifragaceae). American Journal of Botany, 78, 1379-1390.
44. Soltis DE, Soltis PS, Milligan BG (1992) Intraspecific cpDNA variation: systematic and phylogenetic implications. In: Molecular Systematics of Plants (eds Soltis PS, Soltis DE, Doyle JJ), pp. 117-150. Chapmann & Hall, New York.
45. Soltis DE, Gitzendanner MA, Strenge DD, Soltis PS (1997) Chloroplast DNA intraspecific phylogeography of plants from the Pacific Northwest of North America. Plant Systematics and Evolution, 206, 353-373.
46. Sømme L (1997) Adaptations to the alpine environment in insects and other terrestrial arthropods. In: Ecosystems of the World. 3. Polar and Alpine Tundra, Vol. 3 (ed. Wielgolaski FE), pp. 11-25. Elsevier Science, Amsterdam.
47. Spolsky C, Davis GM, Zhang Y (1996) Sequencing methodology and phylogenetic analysis: cytochrome b gene sequence reveals significant diversity in Chinese populations of Oncomelania (Gastropoda: Pomatiopsidae). Malacologia, 38, 213-221.
48. Stange LA (2002) The Slugs of Florida (Gastropoda: Pulmonata). EENY-087. University of Florida, Gainesville, FL.
49. Swofford DL (2002) PAUP*. Phylogenetic Analysis Using Parsimony (* and Other Methods), Version 4. Sinauer Associates Inc, Sunderland MA.
50. Thollesson M (1999) Phylogenetic analysis of dorid nudibranchs (Gastropoda: Doridacea) using the mitochondrial 16s rRNA gene. Journal of Molluscan Studies, 65, 335-353.
51. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research, 24, 4876-4882.
52. Vincent WF, Neale PJ (2000) Mechanisms of UV damage to aquatic organisms. In: The Effects of UV Radiation in the Marine Environment (eds de Mora S, Demers S, Vernet M), pp. 149-176. Cambridge University Press, Cambridge.
53. Wakabayashi J, Sawyer TL (2001) Stream incision, tectonics, uplift, and evolution of topography of the Sierra Nevada, California. Journal of Geology, 109, 539-562.
54. Wilke T (2003) Salenthydrobia n. General (Rissooidea: Hydrobiidae): a potential relict of the Messinian salinity crisis. Zoological Journal of the Linnean Society, 137, 319-336.
55. Williamson M (1959) Studies on the colour and genetics of the black slug. Proceedings of the Royal Physical Society of Edinburgh, 27, 87-93.
56. Wolfe JA (1969) Neogene floristic and vegetational history of the Pacific Northwest. Madroño, 20, 83-110.
57. Xia X, Xie Z (2001) DAMBE: Software Package for Data Analysis in Molecular Biology and Evolution. Journal of Heredity, 92, 371-373.
58. Xia X, Xie Z, Salemi M, Chen L, Wang Y (2003) An index of substitution saturation and its application. Molecular Phylogenetics and Evolution, 26, 1-7.