-
1
-
-
0021320685
-
Mutagenesis and inducible responses to deoxyribonucleic acid damage in Escherichia coli
-
Walker,G.C. (1984) Mutagenesis and inducible responses to deoxyribonucleic acid damage in Escherichia coli. Microbiol. Rev., 48, 60-93.
-
(1984)
Microbiol. Rev.
, vol.48
, pp. 60-93
-
-
Walker, G.C.1
-
2
-
-
0038401982
-
Identification of additional genes belonging to the LexA regulon in Escherichia coli
-
Fernández De Henestrosa,A.R., Ogi,T., Aoyagi,S., Chafin,D., Hayes,J.J., Ohmori,H. and Woodgate,R. (2000) Identification of additional genes belonging to the LexA regulon in Escherichia coli. Mol. Microbiol., 35, 1560-1572.
-
(2000)
Mol. Microbiol.
, vol.35
, pp. 1560-1572
-
-
Fernández De Henestrosa, A.R.1
Ogi, T.2
Aoyagi, S.3
Chafin, D.4
Hayes, J.J.5
Ohmori, H.6
Woodgate, R.7
-
3
-
-
0035023305
-
Comparative gene expression profiles following UV exposure in wild-type and SOS-deficient Escherichia coli
-
Courcelle,J., Khodursky,A., Peter,B., Brown,P.O. and Hanawalt,P.C. (2001) Comparative gene expression profiles following UV exposure in wild-type and SOS-deficient Escherichia coli. Genetics, 158, 41-64.
-
(2001)
Genetics
, vol.158
, pp. 41-64
-
-
Courcelle, J.1
Khodursky, A.2
Peter, B.3
Brown, P.O.4
Hanawalt, P.C.5
-
4
-
-
0025361131
-
Nature of SOS-inducing signal in Escherichia coli. The involvement of DNA replication
-
Sassanfar,M. and Roberts,J.W. (1990) Nature of SOS-inducing signal in Escherichia coli. The involvement of DNA replication. J. Mol. Biol., 212, 79-96.
-
(1990)
J. Mol. Biol.
, vol.212
, pp. 79-96
-
-
Sassanfar, M.1
Roberts, J.W.2
-
5
-
-
0025810994
-
Mechanism of specific LexA cleavage: Autodigestion and the role of RecA coprotease
-
Little,J.W. (1991) Mechanism of specific LexA cleavage: autodigestion and the role of RecA coprotease. Biochimie, 73, 411-421.
-
(1991)
Biochimie
, vol.73
, pp. 411-421
-
-
Little, J.W.1
-
6
-
-
0035823008
-
Crystal structure of LexA: A conformational switch for regulation of self-cleavage
-
Luo,Y., Pfuetzner,R.A., Mosimann,S., Paetzel,M., Frey,E.A., Cherney,M., Kim,B., Little,J.W. and Strynadka,N.C. (2001) Crystal structure of LexA: a conformational switch for regulation of self-cleavage. Cell, 106, 585-594.
-
(2001)
Cell
, vol.106
, pp. 585-594
-
-
Luo, Y.1
Pfuetzner, R.A.2
Mosimann, S.3
Paetzel, M.4
Frey, E.A.5
Cherney, M.6
Kim, B.7
Little, J.W.8
Strynadka, N.C.9
-
7
-
-
0031943348
-
The Bacillus subtilis DinR binding site: Redefinition of the consensus sequence
-
Winterling,K.W., Chafin,D., Hayes,J.J., Sun,J., Levine,A.S., Yasbin,R.E. and Woodgate,R. (1998) The Bacillus subtilis DinR binding site: redefinition of the consensus sequence. J. Bacteriol. 180, 2201-2211.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 2201-2211
-
-
Winterling, K.W.1
Chafin, D.2
Hayes, J.J.3
Sun, J.4
Levine, A.S.5
Yasbin, R.E.6
Woodgate, R.7
-
8
-
-
0036267340
-
Definition of the Mycobacterial SOS box and use to identify LexA-regulated genes in Mycobacterium tuberculosis
-
Davis,E.O., Dullaghan,E.M. and Rand,L. (2002) Definition of the Mycobacterial SOS box and use to identify LexA-regulated genes in Mycobacterium tuberculosis. J. Bacteriol., 184, 3287-3295.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 3287-3295
-
-
Davis, E.O.1
Dullaghan, E.M.2
Rand, L.3
-
9
-
-
1542344843
-
LexA-binding sequences in Gram-positive and cyanobacteria are closely related
-
Mazón,G., Lucena,J.M., Campoy,S., Ferández de Henestrosa,A.R., Candau,P. and Barbé,J. (2003) LexA-binding sequences in Gram-positive and cyanobacteria are closely related. Mol. Gen. Genomics, 271, 40-49.
-
(2003)
Mol. Gen. Genomics
, vol.271
, pp. 40-49
-
-
Mazón, G.1
Lucena, J.M.2
Campoy, S.3
Ferández de Henestrosa, A.R.4
Candau, P.5
Barbé, J.6
-
10
-
-
0344464768
-
In silico analysis reveals substantial variability in the gene contents of the Gamma Proteobacteria LexA-regulon
-
Erill,I., Escribano,M., Campoy,S. and Barbé,J. (2003) In silico analysis reveals substantial variability in the gene contents of the Gamma Proteobacteria LexA-regulon. Bioinformatics, 19, 2225-2236.
-
(2003)
Bioinformatics
, vol.19
, pp. 2225-2236
-
-
Erill, I.1
Escribano, M.2
Campoy, S.3
Barbé, J.4
-
11
-
-
0031807595
-
Identification of the Rhodobacter sphaeroides SOS box
-
Fernández de Henestrosa,A.R., Rivera,E., Tapias,A. and Barbé J. (1998) Identification of the Rhodobacter sphaeroides SOS box. Mol. Microbiol., 28, 991-1003.
-
(1998)
Mol. Microbiol.
, vol.28
, pp. 991-1003
-
-
Fernández de Henestrosa, A.R.1
Rivera, E.2
Tapias, A.3
Barbé, J.4
-
12
-
-
0032833682
-
Regulation of divergent transcription from the uvrA-ssb promoters in Sinorhizobium meliloti
-
Tapias,A. and Barbé,J. (1999) Regulation of divergent transcription from the uvrA-ssb promoters in Sinorhizobium meliloti. Mol. Gen. Genet., 262, 121-130.
-
(1999)
Mol. Gen. Genet.
, vol.262
, pp. 121-130
-
-
Tapias, A.1
Barbé, J.2
-
13
-
-
1242318677
-
Transcriptome and proteome analysis of Bacillus subtilis gene expression in response to superoxide and peroxide stress
-
Mostertz,J., Scharf,C., Hecker,M. and Homuth,G. (2004) Transcriptome and proteome analysis of Bacillus subtilis gene expression in response to superoxide and peroxide stress. Microbiology 150, 497-512.
-
(2004)
Microbiology
, vol.150
, pp. 497-512
-
-
Mostertz, J.1
Scharf, C.2
Hecker, M.3
Homuth, G.4
-
14
-
-
0036267340
-
Definition of the mycobacterial SOS box and use to identify LexA-regulated genes in Mycobacterium tuberculosis
-
Davis,E.O., Dullaghan,E.M. and Rand,L. (2002) Definition of the mycobacterial SOS box and use to identify LexA-regulated genes in Mycobacterium tuberculosis. J. Bacteriol., 184, 3287-3295.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 3287-3295
-
-
Davis, E.O.1
Dullaghan, E.M.2
Rand, L.3
-
15
-
-
0034330226
-
Comparative analysis of regulatory patterns in bacterial genomes
-
Gelfand,M.S., Novichkov,P.S., Novichkova,E.S. and Mironov,A.A. (2000) Comparative analysis of regulatory patterns in bacterial genomes. Brief. Bioinform., 1, 357-371.
-
(2000)
Brief. Bioinform.
, vol.1
, pp. 357-371
-
-
Gelfand, M.S.1
Novichkov, P.S.2
Novichkova, E.S.3
Mironov, A.A.4
-
16
-
-
0035910178
-
Transcriptional regulation of pentose utilisation systems in the Bacillus/Clostridium group of bacteria
-
Rodionov,D.A., Mironov,A.A. and Gelfand,M.S. (2001) Transcriptional regulation of pentose utilisation systems in the Bacillus/Clostridium group of bacteria. FEMS Microbiol. Lett., 205, 305-314.
-
(2001)
FEMS Microbiol. Lett.
, vol.205
, pp. 305-314
-
-
Rodionov, D.A.1
Mironov, A.A.2
Gelfand, M.S.3
-
17
-
-
0000133199
-
Identifying protein-binding sites from unaligned DNA fragments
-
Stormo,G.D. and Hartzell,G.W. (1989) Identifying protein-binding sites from unaligned DNA fragments. Proc. Natl Acad. Sci. USA, 86, 1183-1187.
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 1183-1187
-
-
Stormo, G.D.1
Hartzell, G.W.2
-
18
-
-
0025320805
-
An EM algorithm for the identification and characterization of common sites in unaligned biopolymers sequence
-
Lawrence,C.E. and Reilly,A.A. (1990) An EM algorithm for the identification and characterization of common sites in unaligned biopolymers sequence. Proteins, 7, 41-51.
-
(1990)
Proteins
, vol.7
, pp. 41-51
-
-
Lawrence, C.E.1
Reilly, A.A.2
-
19
-
-
0032483307
-
Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies
-
van Helden,J., André,B. and Collado-Vides,J. (1998) Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies. J. Mol. Biol. 281, 827-842.
-
(1998)
J. Mol. Biol.
, vol.281
, pp. 827-842
-
-
van Helden, J.1
André, B.2
Collado-Vides, J.3
-
20
-
-
0027912333
-
Detecting subtle sequence signals: A Gibbs sampling strategy for multiple alignment
-
Lawrence,C.E., Altschul,S.F., Boguski,M.S., Liu,J.S., Neuwald,A.F. and Wooton,J.C. (1993) Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment. Science, 262, 208-214.
-
(1993)
Science
, vol.262
, pp. 208-214
-
-
Lawrence, C.E.1
Altschul, S.F.2
Boguski, M.S.3
Liu, J.S.4
Neuwald, A.F.5
Wooton, J.C.6
-
21
-
-
0029197507
-
The value of prior knowledge in discovering motifs with MEME
-
AAAI Press, Menlo Park, CA
-
Bailey,T.L. and Elkan,C. (1995) The value of prior knowledge in discovering motifs with MEME, Proc. IIIrd Int. Conf. Intel. Sys. Mol. Biol. AAAI Press, Menlo Park, CA, 21-29,
-
(1995)
Proc. IIIrd Int. Conf. Intel. Sys. Mol. Biol.
, pp. 21-29
-
-
Bailey, T.L.1
Elkan, C.2
-
22
-
-
0037721512
-
Regulation of biosynthesis and transport of aromatic amino acids in low-GC Gram-positive bacteria
-
Panina,E.M., Vitreschak,A.G., Mironov,A.A. and Gelfand,M.S. (2003) Regulation of biosynthesis and transport of aromatic amino acids in low-GC Gram-positive bacteria. FEMS Microbiol. Lett., 222, 211-220.
-
(2003)
FEMS Microbiol. Lett.
, vol.222
, pp. 211-220
-
-
Panina, E.M.1
Vitreschak, A.G.2
Mironov, A.A.3
Gelfand, M.S.4
-
23
-
-
3242879355
-
PredictRegulon: A web server for the prediction of the regulatory protein binding sites and operons in prokaryote genomes
-
Yellaboina,S., Seshadri,J., Kumar,M.S. and Ranjan,A. (2004) PredictRegulon: a web server for the prediction of the regulatory protein binding sites and operons in prokaryote genomes. Nucleic Acids Res. 32, W318-W320.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Yellaboina, S.1
Seshadri, J.2
Kumar, M.S.3
Ranjan, A.4
-
24
-
-
0029610851
-
The RecA protein as a model molecule for molecular systematic studies of bacteria: Comparison of trees of RecAs and 16S rRNAs from the same species
-
Eisen,J.A. (1995) The RecA protein as a model molecule for molecular systematic studies of bacteria: comparison of trees of RecAs and 16S rRNAs from the same species. J. Mol. Evol., 41, 1105-1123.
-
(1995)
J. Mol. Evol.
, vol.41
, pp. 1105-1123
-
-
Eisen, J.A.1
-
25
-
-
0001271789
-
Phylogenetic structure of the prokaryotic domains: The primary kingdoms
-
Woese,C.R. and Fox,G.E. (1977) Phylogenetic structure of the prokaryotic domains: the primary kingdoms. Proc. Natl Acad. Sci. USA 74, 5088-5090.
-
(1977)
Proc. Natl. Acad. Sci. USA
, vol.74
, pp. 5088-5090
-
-
Woese, C.R.1
Fox, G.E.2
-
27
-
-
0004214698
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Silhavy,T.J., Berman,M.L. and Enquist,L.W. (1984) Experiments with Gene Fusion. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1984)
Experiments With Gene Fusion
-
-
Silhavy, T.J.1
Berman, M.L.2
Enquist, L.W.3
-
28
-
-
0041663983
-
LexA-independent DNA damage-mediated induction of gene expression in Myxococcus xanthus
-
Campoy,S., Fontes,M., Padmanabhan,S., Cortes,P., Llagostera,M. and Barbé,J. (2003) LexA-independent DNA damage-mediated induction of gene expression in Myxococcus xanthus. Mol. Microbiol. 49, 769-781.
-
(2003)
Mol. Microbiol.
, vol.49
, pp. 769-781
-
-
Campoy, S.1
Fontes, M.2
Padmanabhan, S.3
Cortes, P.4
Llagostera, M.5
Barbé, J.6
-
29
-
-
0014949207
-
Cleavage of structural proteins during the assembly of the head of bacteriophage T4
-
Laemmli,U.K. (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature, 227, 680-685.
-
(1970)
Nature
, vol.227
, pp. 680-685
-
-
Laemmli, U.K.1
-
30
-
-
0023147228
-
Selection of DNA binding sites by regulatory proteins, statistical-mechanical theory and application to operators and promoters
-
Berg,O.G. and von Hippel,P.H. (1987) Selection of DNA binding sites by regulatory proteins, statistical-mechanical theory and application to operators and promoters. J. Mol. Biol., 193, 723-750.
-
(1987)
J. Mol. Biol.
, vol.193
, pp. 723-750
-
-
Berg, O.G.1
von Hippel, P.H.2
-
31
-
-
0025183708
-
Basic local alignment search tool
-
Altschul,S.F., Gish,W., Miller,W., Myers,E.W. and Lipman,D.J. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
32
-
-
2142738304
-
WebLogo: A sequence logo generator
-
Crooks,G.E., Hon,G., Chandonia,J.M. and Brenner,S.E. (2004) WebLogo: a sequence logo generator. Genome Res., 14, 1188-1190.
-
(2004)
Genome Res.
, vol.14
, pp. 1188-1190
-
-
Crooks, G.E.1
Hon, G.2
Chandonia, J.M.3
Brenner, S.E.4
-
33
-
-
4744339390
-
Widespread distribution of a lexA-regulated DNA damage-inducible multiple gene cassette in the Proteobacteria phylum
-
Abella,M., Erill,I., Jara,M., Mazón,G., Campoy,S. and Barbé,J. (2004) Widespread distribution of a lexA-regulated DNA damage-inducible multiple gene cassette in the Proteobacteria phylum. Mol. Microbiol., 54, 212-222.
-
(2004)
Mol. Microbiol.
, vol.54
, pp. 212-222
-
-
Abella, M.1
Erill, I.2
Jara, M.3
Mazón, G.4
Campoy, S.5
Barbé, J.6
-
34
-
-
0037326508
-
Identification of a protein, YneA, responsible for cell division suppression during the SOS response in Bacillus subtilis
-
Kawai,Y., Moriya,S. and Ogasawara,N. (2003) Identification of a protein, YneA, responsible for cell division suppression during the SOS response in Bacillus subtilis. Mol. Microbiol., 47, 1113-1122.
-
(2003)
Mol. Microbiol.
, vol.47
, pp. 1113-1122
-
-
Kawai, Y.1
Moriya, S.2
Ogasawara, N.3
-
35
-
-
0036136384
-
Localization of UvrA and effect of DNA damage on the chromosome of Bacillus subtilis
-
Smith,B.T., Grossman,A.D. and Walker,G.C. (2002) Localization of UvrA and effect of DNA damage on the chromosome of Bacillus subtilis. J. Bacteriol., 184, 488-493.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 488-493
-
-
Smith, B.T.1
Grossman, A.D.2
Walker, G.C.3
-
36
-
-
1142298583
-
Differential expression of two paralogous genes of Bacillus subtilis encoding single-stranded DNA binding protein
-
Lindner,C., Nijland,R., van Hartskamp,M., Bron,S., Hamoen,L.W. and Kuipers,O.P. (2004) Differential expression of two paralogous genes of Bacillus subtilis encoding single-stranded DNA binding protein. J. Bacteriol., 186, 1097-1105.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 1097-1105
-
-
Lindner, C.1
Nijland, R.2
van Hartskamp, M.3
Bron, S.4
Hamoen, L.W.5
Kuipers, O.P.6
-
37
-
-
0000918686
-
The dinB gene encodes a novel E. coli DNA polymerase, DNA pol IV, involved in mutagenesis
-
Wagner,J., Gruz,P., Kim,S.R., Yamada,M., Matsui,K., Fuchs,R.P. and Nohmi,T. (1999) The dinB gene encodes a novel E. coli DNA polymerase, DNA pol IV, involved in mutagenesis. Mol. Cell., 4, 281-286.
-
(1999)
Mol. Cell
, vol.4
, pp. 281-286
-
-
Wagner, J.1
Gruz, P.2
Kim, S.R.3
Yamada, M.4
Matsui, K.5
Fuchs, R.P.6
Nohmi, T.7
-
38
-
-
0037192308
-
DNA polymerase V-dependent mutator activity in an SOS-induced Escherichia coli strain with a temperature-sensitive DNA polymerase III
-
Timms,A.R. and Bridges,B.A. (2002) DNA polymerase V-dependent mutator activity in an SOS-induced Escherichia coli strain with a temperature-sensitive DNA polymerase III. Mutat. Res., 499, 97-101.
-
(2002)
Mutat. Res.
, vol.499
, pp. 97-101
-
-
Timms, A.R.1
Bridges, B.A.2
-
39
-
-
0034836521
-
LuxArray, a high-density, genomewide transcription analysis of Escherichia coli using bioluminescent reporter strains
-
Van Dyk,T.K., DeRose,E.J. and Gonye,G.E. (2001) LuxArray, a high-density, genomewide transcription analysis of Escherichia coli using bioluminescent reporter strains. J. Bacteriol., 183, 5496-5505.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 5496-5505
-
-
Van Dyk, T.K.1
DeRose, E.J.2
Gonye, G.E.3
-
40
-
-
0029043097
-
Analysis of gyrA and grlA mutations in stepwise-selected ciprofloxacin-resistant mutants of Staphylococcus aureus
-
Ferrero,L., Cameron,B. and Crouzet,J. (1995) Analysis of gyrA and grlA mutations in stepwise-selected ciprofloxacin-resistant mutants of Staphylococcus aureus. Antimicrob. Agents Chemother., 39, 1554-1558.
-
(1995)
Antimicrob. Agents Chemother.
, vol.39
, pp. 1554-1558
-
-
Ferrero, L.1
Cameron, B.2
Crouzet, J.3
-
41
-
-
0842307683
-
Role of efflux pumps and mutations in genes for topoisomerases II and IV in fluoroquinolone-resistant Pseudomonas aeruginosa strains
-
Oh,H., Stenhoff,J., Jalal,S. and Wretlind,B. (2003) Role of efflux pumps and mutations in genes for topoisomerases II and IV in fluoroquinolone-resistant Pseudomonas aeruginosa strains. Microb. Drug Resist., 9, 323-329.
-
(2003)
Microb. Drug Resist.
, vol.9
, pp. 323-329
-
-
Oh, H.1
Stenhoff, J.2
Jalal, S.3
Wretlind, B.4
-
42
-
-
3142702966
-
Critical role of magnesium ions in DNA polymerase beta's closing and active site assembly
-
Yang,L., Arora,K., Beard,W.A., Wilson,S.H. and Schlick,T. (2004) Critical role of magnesium ions in DNA polymerase beta's closing and active site assembly. J. Am. Chem. Soc., 126, 8441-8453.
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 8441-8453
-
-
Yang, L.1
Arora, K.2
Beard, W.A.3
Wilson, S.H.4
Schlick, T.5
-
43
-
-
0038304303
-
Repair system for noncanonical purines in Escherichia coli
-
Burgis,N.E., Brucker,J.J. and Cunningham,R.P. (2003) Repair system for noncanonical purines in Escherichia coli. J. Bacteriol., 185, 3101-3110.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 3101-3110
-
-
Burgis, N.E.1
Brucker, J.J.2
Cunningham, R.P.3
|