Genomic mutation in lines of Arabidopsis thaliana exposed to ultraviolet-B radiation

Genetics

Volumn 171, Issue 2, 2005, Pages 715-723

  MacKenzie, Joanna L ^a   Saadé, Fabienne E ^a   Quang, Hien Le ^a,b   Bureau, Thomas E ^a   Schoen, Daniel J ^a  

^a MCGILL UNIVERSITY   (Canada)

^b CEMAGREF   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; ARTICLE; CONTROLLED STUDY; FLOWER; GENE MUTATION; MUTATION RATE; NONHUMAN; PRIORITY JOURNAL; PROGENY; RADIATION EXPOSURE; TRANSPOSON; ULTRAVIOLET B RADIATION;

ARABIDOPSIS; DNA PRIMERS; DNA TRANSPOSABLE ELEMENTS; FLOWERS; LIKELIHOOD FUNCTIONS; MUTAGENESIS, INSERTIONAL; MUTATION; ULTRAVIOLET RAYS;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 31544432818     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.105.042002     Document Type: Article

References (48)

1. BATAILLON, T., 2000 Estimation of spontaneous genome-wide mutation rate parameters: whither beneficial mutations. Heredity 84: 497-501.
2. BENNETZEN, J. L., 2000 Transposable element contributions to plant gene and genome evolution. Plant Mol. Biol. 42: 251-269.
3. BRITT, A. B., 1996 DNA damage and repair in plants. Annu. Rev. Plant Physiol. Plant Mol. Biol. 47: 75-100.
4. BRITT, A. B., 2004 Repair of DNA damage induced by solar UV. Photosynth. Res. 81: 105-112.
5. CHARLESWORTH, B., and C. H. LANGLEY, 1986 The evolution of self-regulated transposition of transposable elements. Genetics 112: 359-383.
6. CHARLESWORTH, B., H. BORTHWICK, C. BARTOLOMÉ and P. PIGNATELLI, 2004 Estimates of the genomic mutation rate for detrimental alleles in Drosophila melanogaster. Genetics 167: 815-826.
7. DAVIES, E. K., A. D. PETERS and P. D. KEIGHTLEY, 1999 High frequency of cryptic deleterious mutations in Caenorhabditis elegans. Science 285: 1748-1751.
8. DENVER, R. R., K. MORRIS, M. LYNCH and W. K. THOMAS, 2004 High mutation rate and predominance of insertions in the Caenorhabditis elegans nuclear genome. Nature 430: 679-682.
9. DRAKE, J. W., B. CHARLESWORTH, D. CHARLESWORTH and J. F. CROW, 1998 Rates of spontaneous mutation. Genetics 148: 1667-1686.
10. ESTES, S., P. C. PHILLIPS, D. R. DENVER, W. K. THOMAS and M. LYNCH, 2004 Mutation accumulation in populations of varying size: the distribution of mutational effects correlates in Caenorhabditis elegans. Genetics 166: 1269-1279.
11. FRY, J. D., 2004 On the rate and linearity of viability decline in Drosophila mutation-accumulation experiments: genomic mutation rates and synergistic epistasis revisited. Genetics 166: 797-806.
12. HILBORN, R., and M. MANGEL, 1997 The Ecological Detective. Princeton University Press, Princeton, NJ.
13. HIROCHIKA, H., K. SUGIMOTO, Y. OTSUKI, H. TSUGAWA and M. KANDA, 1996 Retrotransposons of rice involved in mutations induced by tissue culture. Proc. Natl. Acad. Sci. USA 93: 7783-7788.
14. JACKSON, J. F., 1987 DNA repair in pollen. A review. Mutat. Res. 181: 17-29.
15. KEIGHTLEY, P. D., 1994 The distribution of mutation effects on viability in Drosophila melanogaster. Genetics 138: 1315-1322.
16. KEIGHTLEY, P. D., and A. EYRE-WALKER, 2000 Deleterious mutations and the evolution of sex. Science 290: 331-333.
17. KEIGHTLEY, P. D., and M. LYNCH, 2003 Towards a realistic model of mutations affecting fitness. Evolution 57: 683-685.
18. KEIGHTLEY, P. D., and O. OHNISHI, 1998 EMS-induced polygenic mutation rates for nine quantitative characters in Drosophila melanogaster. Genetics 148: 753-766.
19. KERR, J. B., and C. T. McELROY, 1993 Evidence for large upward trends of ultraviolet-B radiation linked to ozone depletion. Science 262: 1032-1034.
20. KRIZEK, D. T., and R. M. MIRECKI, 2004 Evidence for phytotoxic effects of cellulose acetate in UV exclusion studies. Environ. Exp. Bot. 51: 33-43.
21. KRIZEK, D. T., R. M. MIRECKI and S. J. BRITZ, 1997 Inhibitory effects of ambient solar UV-A and UV-B radiation on growth of cucumber. Physiol. Plant 100: 886-893.
22. KONDRASHOV, A. S., and J. F. CROW, 1993 A molecular approach to estimating the human deleterious mutation rate. Hum. Mutat. 2: 229-234.
23. KORSWAGEN, H. C., R. M. DURBIN, M. T. SMITS and R. H. A. PLASTERK, 1996 Transposon Tc-1 derived, sequence tagged sites in Caenorhabditis elegans as markers for gene mapping. Proc. Natl. Acad. Sci. USA 93: 14680-14685.
24. LE, Q.-H., S. I. WRIGHT, Z. YU and T. E. BUREAU, 2000 Transposon diversity in Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 97: 7376-7381.
25. LYMAN, R. F., F. LAWRENCE, S. V. NUZHDIN and T. F. C. MACKAY, 1996 Effects of single P-element insertions on bristle number and viability in Drosophila melanogaster. Genetics 143: 227-292.
26. LYNCH, M., and B. WALSH, 1997 Genetics and Analysis of Quantitative Traits. Sinauer, Sunderland, MA.
27. LYNCH, M., J. BLANCHARD, D. HOULE, T. KIBOTA, S. SCHULTZ et al., 1999 Perspective: spontaneous deleterious mutation. Evolution 53: 645-663.
28. MACKAY, T. F. C., R. F. LYMAN and M. S. JACKSON, 1992 Effects of P-element mutations on quantitative traits in Drosophila melanogaster. Genetics 130: 315-332.
29. MANLY, B. F. J., 1997 Randomization, Bootstrap and Monte Carlo Methods in Biology, Ed. 2. Chapman & Hall, London.
30. MIURA, A., S. YONEBAYASHI, K. WATANABE, T. TOYAMA, H. SHIMADA et al., 2001 Mobilization of transposons by a mutation abolishing full DNA methylation in Arabidopsis. Nature 411: 212-214.
31. MORGAN, M. T., 2001 Transposable element number in mixed mating populations. Genet. Res. 77: 261-275.
32. NUZHDIN, S. V., and T. F. C. MACKAY, 1995 The genomic rate of transposable element movement in Drosophila melanogaster. Mol. Biol. Evol. 12: 180-181.
33. PECK, J. R., and A. EYRE-WALKER, 1997 The muddle about mutations. Nature 387: 135-136.
34. RIES, G., W. HELLER, H. PUCHTA, H. SANDERMANN, H. K. SEIDLITZ et al., 2000 Elevated UV-B radiation reduces genome stability in plants. Nature 406: 98-101.
35. ROUSSEAUX, M. C., C. L. BALLARÉ, C. V. Giordano, A. L. SCOPEL, A. M. ZIMA et al., 1999 Ozone depletion and UVB radiation: impact on plant DNA damage in South America. Proc. Natl. Acad. Sci. USA 96: 15310-15315.
36. SCHULTZ, S. T., M. LYNCH and J. H. WILLIS, 1999 Spontaneous deleterious mutation in Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 96: 11393-11398.
37. SETLOW, R. B., 1974 The wavelengths in sunlight effective in producing skin cancer: a theoretical analysis. Proc. Natl. Acad. Sci. USA 71: 3363-3366.
38. SISSON, W. B., and M. M. CALDWELL, 1975 Lamp/filter systems for simulation of solar UV irradiance under reduced atmospheric ozone. Photochem. Photobiol. 175: 453-456.
39. SHAW, F. H., C. J. GEYER and R. G. SHAW, 2002 A comprehensive model of mutations affecting fitness and inferences for Arabidopsis thaliana. Evolution 56: 453-463.
40. SHAW, R. G., D. L. BYERS and E. DARMO, 2000 Spontaneous mutational effects on reproductive traits of Arabidopsis thaliana. Genetics 155: 369-378.
41. SHAW, R. G., F. H. SHAW and C. GEYER, 2003 What fraction of mutations reduce fitness? A reply to Keightley and Lynch. Evolution 57: 686-689.
42. VAN DEN BROECK, D., T. MAES, M. SAUER, J. ZETHO, P. DE LEUKELEIRE et al., 1998 Transpson display identifies individual transposable elements in high copy number lines. Plant J. 13: 121-129.
43. WALBOT, V., 1999 UV-B damage amplified by transposons in maize. Nature 397: 388-389.
44. WESSLER, S. R., 1996 Turned on by stress. Plant retrotransposons. Curr. Biol. 6: 959-961.
45. WHITTLE, C.-A., and M. O. JOHNSTON, 2003 Male-biased transmission of deleterious mutations to the progeny in Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 100: 4055-4059.
46. WRIGHT, S. I., and D. J. SCHOEN, 1999 Transposon dynamics and the breeding system. Genetica 107: 139-148.
47. WRIGHT, S. I., Q. H. LE, D. J. SCHOEN and T. E. BUREAU, 2001 Population dynamics of an Ac-like transposable element in self- and cross-pollinating Arabidopsis. Genetics 158: 1279-1288.
48. WRIGHT, S. I., B. LAUGA and D. CHARLESWORTH, 2002 Rates and patterns of molecular evolution in inbred and outbred Arabidopsis. Mol. Biol. Evol. 18: 1407-1420.