Molecular identification and chromosomal localization of genes encoding Triticum aestivum xylanase inhibitor l-like proteins in cereals

Theoretical and Applied Genetics

Volumn 109, Issue 1, 2004, Pages 112-121

  Raedschelders, G ^a   Debefve, C ^a   Goesaert, H ^b   Delcour, J A ^b   Volckaert, G ^a   Van Campenhout, S ^a  

^a LABORATORY OF GENE TECHNOLOGY   (Belgium)

^b UNIVERSITY OF LEUVEN   (Belgium)

Author keywords

[No Author keywords available]

Indexed keywords

BIOMARKERS; CROPS; ENZYME INHIBITION; GENES; PROTEINS;

CHROMOSOMAL LOCALIZATION; GRAIN PROCESSING; MOLECULAR IDENTIFICATION;

GENETIC ENGINEERING;

PRIMER DNA; TAXI I PROTEIN, TRITICUM AESTIVUM; VEGETABLE PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; BARLEY; CHROMOSOME MAP; CLUSTER ANALYSIS; COMPARATIVE STUDY; DNA SEQUENCE; GENE STRUCTURE; GENETICS; MOLECULAR GENETICS; NUCLEIC ACID AMPLIFICATION; NUCLEOTIDE SEQUENCE; RYE; SEQUENCE ALIGNMENT; WHEAT;

AMINO ACID SEQUENCE; BASE SEQUENCE; CHROMOSOME MAPPING; CLUSTER ANALYSIS; DNA PRIMERS; GENE COMPONENTS; HORDEUM; MOLECULAR SEQUENCE DATA; NUCLEIC ACID AMPLIFICATION TECHNIQUES; PLANT PROTEINS; SECALE CEREALE; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; TRITICUM;

HORDEUM; HORDEUM VULGARE; HORDEUM VULGARE SUBSP. VULGARE; LYCOPERSICON ESCULENTUM; SECALE CEREALE; TRITICUM; TRITICUM AESTIVUM;

EID: 3142775775     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-004-1601-4     Document Type: Article

References (57)

1. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
2. Bedford MR, Schulze H (1998) Exogenous enzymes for pigs and poultry. Nutr Res Rev 11:91-114
3. Biely P, Vršanská M, Tenkanen M, Kluepfel D (1997) Endo-β-1,4-xylanase families: differences in catalytic properties. J Biotechnol 57:151-166
4. Blackgrove RJ, Gillespie JM (1975) Isolation, purification and characterization of the seed globulins of Lupinus angustifolius. Aust J Plant Physiol 2:13-27
5. Blackgrove RJ, Gillespie JM, Lilley GG, Woods EF (1980) Physicochemical studies of conglutin gamma, a storage globulin from seeds of Lupinus angustifolius. Aust J Plant Physiol 7:1-13
6. Bugbee WM (1993) A pectin lyase inhibitor protein from cell walls of sugar-beet. Phytopathology 83:63-68
7. Christophersen C, Andersen E, Jakobsen TS, Bagsvaerd PW (1997) Xylanases in wheat separation. Starch 49:5-12
8. Christov LP, Szakacs G, Balakrishnan H (1999) Production, partial characterization and use of fungal cellulase-free xylanases in pulp-bleaching. Process Biochem 34:511-517
9. Coote N, Kirsop BH (1976) A haze consisting largely of pentosans. J Inst Brew 82:34
10. Courtin CM, Delcour JA (2002) Arabinoxylans and endoxylanases in wheat flour bread-making. J Cereal Sci 35:225-243
11. Debyser W, Delcour JA (1998) Inhibitors of xylanolytic and β-glucanolytic enzymes. European Patent Application WO98/49278
12. Debyser W, Derdelinckx G, Delcour JA (1997) Arabinoxylan solubilisation and inhibition of the barley malt xylanolytic system by wheat during brewing with wheat wholemeal adjunct: evidence for a new class of enzyme inhibitors. J Am Soc Brew Chem 55:153-156
13. Debyser W, Peumans WJ, Van Damme EJM, Delcour JA (1999) TAXI, a new class of enzyme inhibitors affecting bread volume. J Cereal Sci 30:39-43
14. De Lorenzo G, D'Ovidio R, Cervone F (2001) The role of polygalacturonase-inhibiting proteins (PGIPs) in defense against pathogenic fungi. Annu Rev Phytopathol 39:313-35
15. Devos KM, Gale MD (1993) RFLP report: extended genetic maps of the homologous group 3 chromosomes of wheat, rye and barley. Theor Appl Genet 85:649-652
16. Devos KM, Atkinson MD, Chinoy CN, Liu CJ, Gale MD (1992) RFLP-based genetic map of the homologous group 3 chromosomes of wheat and rye. Theor Appl Genet 83:931-939
17. Devos KM, Atkinson MD, Chinoy CN, Francis HA, Harcourt RL, Koebner RMD, Liu CJ, Masojc P, Xie DX, Gale MD (1993) Chromosomal rearrangments in the rye genome relative to that of wheat. Theor Appl Genet 85:673-680
18. Duranti M, Scarafoni A, Gius C, Negri A, Faoro F (1994) Heat-induced synthesis and tunicamycin-sensitive secretion of the putative storage glycoprotein conglutin γ from mature lupin seeds. Eur J Biochem 222:387-393
19. Duranti M, Gius C, Scarafoni A (1995) Lectin-like activity of lupin seed conglutin γ, a glycoprotein previously referred to as a storage protein. J Exp Bot 46:725-728
20. Elleman TC (1977) Amino acid sequence of the smaller subunit of conglutin gamma, a storage globulin of Lupinus angustifolius. Aust J Biol Sci 30:33-45
21. Elliot GO, Hughes RK, Juge N, Kroon PA, Williamson G (2002) Functional identification of the cDNA coding for a wheat endo-14-β-D-xylanase inhibitor. FEBS Lett 519:66-70
22. Elliot GO, Mclauchlan WR, Williamson G, Kroon PA (2003) A wheat xylanase inhibitor protein (XIP-I) accumulates in the grain and has homologues in other cereals. J Cereal Sc 37:187-194
23. Fierens K, Brijs K, Courtin CM, Gebruers K, Goesaert H, Raedschelders G, Robben J, Van Campenhout S, Volckaert G, Delcour JA (2003) Molecular identification of wheat endoxylanase inhibitor TAXI-I member of a new class of plant proteins. FEBS Lett 540:259-263
24. Flatman R, McLauchlan WR, Juge N, Furniss CS, Berrin JG, Hughes RK, Manzanares P, Ladbury JE, O'Brien R, Williamson G (2002) Interactions defining the specificity between fungal xylanases and the wheat proteinaceous inhibitor, XIP-1. Biochem J 365:773-781
25. Gattiker A, Gasteiger E, Bairoch A (2002) ScanProsite: a reference implementation of a PROSITE scanning tool. Appl Bioinform 1:107-108
26. Gebruers K, Debyser W, Goesaert H, Proost P, Van Damme J, Delcour JA (2001) Triticum aestivum L. endoxylanase inhibitor (TAXI) consists of two inhibitors, TAXI I and TAXI II, with different specificities. Biochem J 353:239-244
27. Gebruers K, Goesaert H, Brijs K, Courtin CM, Delcour JA (2002a) Purification of TAXI-like endoxylanase inhibitors from wheat (Triticum aestivum L.) whole meal reveals a family of isoforms. J Enzyme Inhib Med Chem 17:61-8
28. Gebruers K, Courtin CM, Goesaert H, Van Campenhout S, Delcour JA (2002b) Endoxylanase inhibition activity in different European wheat cultivars and milling fractions. Cereal Chem 795:613-616
29. Gebruers K, Brijs K, Courtin CM, Fierens K, Goesaert H, Rabijns A, Raedschelders G, Robben J, Sansen S, Sørensen JF, Van Campenhout S, Delcour JA (2004) Properties of TAXI-type endoxylanase inhibitors. Biochim Biophys Acta 1696:213-221
30. Gill SC, von Hippel PH (1989) Calculation of protein extinction coefficients from amino acid sequence data. Anal Biochem 182:319-26
31. Goesaert H, Debyser W, Gebruers K, Proost P, Van Damme J, Delcour JA (2001) Purification and partial characterization of an endoxylanase inhibitor from barley. Cereal Chem 78:453-457
32. Goesaert H, Gebuers K, Courtin CM, Proost P, Van Damme J, Delcour JA (2002) A family of TAXI-like endoxylanase inhibitors in rye. J Cereal Sci 36:177-185
33. Goesaert H, Gebruers K, Brijs K, Courtin CM, Delcour JA (2003a) TAXI-type endoxylanase inhibitors in different cereals. J Agric Food Chem 51:3770-3775
34. Goesaert H, Gebruers K, Brijs K, Courtin CM, Delcour JA (2003b) XIP-type endoxylanase inhibitors in different cereals. J Cereal Sci 38:317-324
35. 2 population. Genetics 148:479-494
36. Henrissat B (1991) A classification of glycosyl hydrolases based on amino acid sequence similarities. Biochem J 280:309-16
37. Henry RJ (1985) A comparison of the non-starch carbohydrates in cereal grains. J Sci Food Agric 36:1243-1253
38. Jeffries TW (1996) Biochemistry and genetics of microbial xylanases. Curr Opin Biotechnol 7:337-42
39. Kagawa H, Hirano H (1987) Soybean basic 7S globulin represents a protein widely distributed in legume species. FEBS Lett 226:145-149
40. Komatsu S, Hirano H (1991) Plant basic 7S globulin-like proteins have insulin and insulin-like growth factor binding activity. FEBS Lett 294:210-212
41. Kurata N, Nagamura Y, Yamamoto K, Harushima Y, Sue N, Wu J, Antonio BA, Shomura A, Shimizu T, Lin SY, Inoue T, Fukuda A, Shimano T, Kuboki Y, Toyama T, Miyamoto Y, Kirihara T, Hayasaka K, Miyao A, Monna L, Zhong HS, Tamura Y, Wang ZX, Momma T, Umehara Y, Yano M, Sasaki T, Minobe Y (1994) A 300 kilobase interval genetic map of rice including 883 expressed sequences. Nat Genet 8:365-372
42. Leclercq C, Dervilly G, Saulnier L, Dallies N, Zimmermann D, Roue C (1999) Barley and malt pentosans: structure and functionalities in the brewing industry. In: Proceedings of the 27th congress of the European Brewery Convention, Eur Brew Con, Zoeterwoude, pp 429-436
43. Mclauchlan WR, Garcia-Conesa MT, Williamson G, Roza M, Ravestein P, Maat J (1999) A novel class of protein from wheat which inhibits xylanases. Biochem J 338:441-446
44. Muntz K (1996) Proteases and proteolytic cleavage of storage proteins in developing and germinating dicotyledonous seeds. J Exp Bot 47:605-622
45. Nakai K, Horton P (1999) PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization. Trends Biochem Sci 24:34-36
46. Qin Q, Bergmann CW, Rose JK, Saladie M, Kolli VS, Albersheim P, Darvill AG, York WS (2003) Characterization of a tomato protein that inhibits a xyloglucan-specific endoglucanase. Plant J 34:327-338
47. Rouau X, Surget A (1998) Evidence for the presence of a pentosanase inhibitor in wheat flour. J Cereal Sci 28:63-70
48. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory, New York
49. Sasaki T, Matsumoto T, Yamamoto K, et al. (2002) The genome sequence and structure of rice chromosome 1. Nature 420:312-316
50. Satoh S, Fujii T (1988) Purification of GP57, and auxin-regulated extracellular glycoprotein of carrots, and its immunocytochemical localization in dermal tissues. Planta 175:364-373
51. Satoh S, Sturm A, Fujii T, Chrispeels MJ (1992) cDNA cloning of an extracellular dermal glycoprotein of carrot and its expression in response to wounding. Planta 188:432-438
52. Sears ER (1966) Nullisomic-tetrasomic combinations in hexaploid wheat. In: Riley R, Lewis KR (eds) Chromosome manipulation and plant genetics. Oliver and Boyd, Edinburgh, pp 389-407
53. Shimada T, Hiraiwa N, Nishimura M, Hara-Nishimura I (1994) Vacuolar processing enzyme of soybean that converts proproteins to the corresponding mature forms. Plant Cell Physiol 35:713-718
54. Simpson DJ, Fincher GB, Huang AHC, Cameron-Mills V (2003) Structure and function of cereal and related higher plant (1-4)-β-xylan endohydrolases. J Cereal Sci 37:111-127
55. Suurnäkki A, Tenkanen M, Buchert J, Viikari L (1997) Hemicellulases in the bleaching of chemical pulps. Adv Biochem Eng Biotechnol 57:261-287
56. Van Deynze AE, Nelson JC, Yglesias ES, Harrington SE, Braga DP, McCouch SR, Sorrells ME (1995) Comparative mapping in grasses. Wheat relationships. Mol Gen Genet 248:744-754
57. Viëtor RJ, Voragen AGJ, Angelino SAGF (1993) Composition of non-starch polysaccharides in wort and spent grains from brewing trials with malt from a good malting quality barley and a feed barley. J Inst Brew 99:243-248