Phylogenetic relationships and floral evolution in the papilionoid legume clade Amorpheae

Brittonia

Volumn 57, Issue 4, 2005, Pages 397-411

  McMahon, Michelle M ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Amorpheae; Barneby; CNGC4; Dalea; Floral evolution; Papilionoideae

Indexed keywords

AMORPHEAE; DALEA; FABACEAE; MEDICAGO; PAPILIONOIDEAE;

EID: 31144439688     PISSN: 0007196X     EISSN: None     Source Type: Journal    
DOI: 10.1663/0007-196X(2005)057[0397:PRAFEI]2.0.CO;2     Document Type: Article

References (58)

1. Álvarez, I. & J. F. Wendel. 2003. Ribosomal ITS sequences and plant phylogenetic inference. Molecular Phylogenetics and Evolution 29: 417-434.
2. Bailey, C. D., T. G. Carr, S. A. Harris & C. E. Hughes. 2003. Characterization of angiosperm nrDNA polymorphism, paralogy, and pseudogenes. Molecular Phylogenetics and Evolution 29: 435-455.
3. _, C. E. Hughes & S. A. Harris. 2004. Using RAPDs to identify DNA sequence loci for species level phylogeny reconstruction: an example from Leucaena (Fabaceae). Systematic Botany 29: 4-14.
4. Barker, F. K. & F. M. Lutzoni. 2002. The utility of the incongruence length difference test. Systematic Biology 51: 625-637.
5. Barneby, R. C. 1962. A synopsis of Errazurizia. Leaflets of Western Botany 9: 209-214.
6. _. 1977. Daleae imagines: an illustrated revision of Errazurizia Philippi, Psorothamnus Rydberg, Marina Liebmann, and Dalea Lucanus emend. Barneby, including all species of Leguminosae tribe Amorpheae Borissova ever referred to Dalea. Memoirs of The New York Botanical Garden 27: 1-891.
7. _. 1980. Three new species of Dalea sect. Parosela (Leguminosae: Amorpheae) from western and southern Mexico. Brittonia 32: 392-396.
8. _. 1981. New species of Dalea section Parosela (Leguminosae: Amorpheae) from Peru and Mexico. Brittonia 33: 508-511.
9. _. 1988. The genus Dalea (Fabaceae tribe Amorpheae) in Departamento de Cajamarca, Peru, with description of three new species. Brittonia 40: 1-6.
10. _. 1990. Two new taxa in Dalea (Fabaceae: Amorpheae) from southern Mexico and northern Chile. Brittonia 42: 89-91.
11. Bentham, G. 1865. Leguminosae. Pages 434-600. In: G. Bentham & J. D. Hooker, editors. Genera plantarum. Lovell Reeve & Co., London, UK.
12. Choi, H. K., D. Kim, T. Uhm, E. Limpens, H. Lim, J.-H. Mun, P. Kalo, R. V. Penmetsa, A. Seres, O. Kulikova, B. A. Roe, T. Bisseling, G. B. Kiss & D. R. Cook. 2004a. A sequence-based genetic map of Medicago truncatula and comparison of marker colinearity with M. sativa. Genetics 166: 1463-1502.
13. _, J.-H. Mun, D.-J. Kim, H. Zhu, J.-M. Baek, J. Mudge, B. Roe, N. Ellis, J. Doyle, G. B. Kiss, N. D. Young & D. R. Cook. 2004b. Estimating genome conservation between crop and model legume species. Proceedings of the National Academy of Science 43: 15289-15294.
14. Corby, H. D. L. 1981. The systematic value of leguminous root nodules. Pages 657-670. In: R. M. Polhill & P. H. Raven, editors. Advances in legume systematics. Part 2. Royal Botanic Gardens, Kew, UK.
15. Crase, D. 2004. Both: a portrait in two parts. Pantheon Books, New York, USA.
16. Doyle, J. J. & J. L. Doyle. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin 19: 11-15.
17. Driskell, A. C., C. Ané, J. G. Burleigh, M. M. McMahon, B. C. O'Meara & M. J. Sanderson. 2004. Prospects for building the tree of life from large sequence databases. Science 306: 1172-1174.
18. Endress, P. K. 1994. Diversity and evolutionary biology of tropical flowers. Cambridge University Press, Cambridge, UK.
19. Estrada-C., A. E., J. A. Villarreal-Q. & M. González-E. 2004. A new species of Dalea sect. Parosela (Fabaceae: Amorpheae) from Mexico. Brittonia 56: 67-71.
20. Farris, J. S., M. Källersjö, A. G. Kluge & C. Bult. 1994. Testing significance of incongruence. Cladistics 10: 315-319.
21. Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 38: 783-791.
22. Ferguson, I. K. 1990. The significance of some pollen morphological characters of the tribe Amorpheae and of the genus Mucuna (tribe Phaseoleae) in the biology and systematics of subfamily Papilionoideae (Leguminosae). Review of Palaeobotany and Palynology 64: 129-36.
23. _ & J. J. Skvarla. 1981. The pollen morphology of the subfamily Papilionoideae (Leguminosae). Pages 859-896. In: R. M. Polhill & P. H. Raven, editors. Advances in legume systematics. Part 2. Royal Botanic Gardens, Kew, UK.
24. Graybeal, A. 1998. Is it better to add taxa or characters to a difficult phylogenetic problem? Systematic Biology 47: 90-17.
25. Guinet, P. & I. K. Ferguson. 1989. Structure, evolution, and biology of pollen in Leguminosae. In: C. H. Stirton & J. L. Zarucchi, editors. Advances in legume biology. Monographs in Systematic Botany from the Missouri Botanical Garden 29: 77-103.
26. Hasegawa, M., H. Kishino & T. Yano. 1985. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. Journal of Molecular Evolution 21: 160-174.
27. Hu, J.-M., M. Lavin, M. F. Wojciechowski & M. J. Sanderson. 2000. Phylogenetic systematics of the tribe Millettieae (Leguminosae) based on chloroplast trnK/matK sequences and its implications for evolutionary patterns in Papilionoideae. American Journal of Botany 87: 418-430.
28. _ & _. 2002. Phylogenetic analysis of nuclear ribosomal ITS/5.8S sequences in the tribe Millettieae (Fabaceae): Poecilanthe-Cycolobium, the core Millettieae, and the Callerya group. Systematic Botany 27: 722-733.
29. Hutchinson, J. 1964. The genera of flowering plants. Vol.1. Dicotyledones. Oxford University Press, Oxford, UK.
30. Isely, D. 1962. Leguminosae of the north-central states IV: Psoraleae. Iowa State Journal Science 37: 103-162.
31. Kajita, T., H. Ohashi, Y. Tateishi, C. D. Bailey & J. J. Doyle. 2001. rbcL and legume phylogeny, with particular reference to Phaseoleae, Millettieae, and allies. Systematic Botany 26: 515-536.
32. Lavin, M., R. T. Pennington, B. B. Klitgaard, J. I. Sprent, H. C. de Lima & P. E. Gasson. 2001. The dalbergioid legumes (Fabaceae): delimitation of a pantropical monophyletic clade. American Journal of Botany 88: 503-533.
33. Maddison, W. P. 1997. Gene trees in species trees. Systematic Biology 46: 523-536.
34. Mansano, V. D., V. Bittrich, A. M. C. D. Tozzi & A. P. de Souza. 2004. Composition of the Lecointea clade (Leguminosae, Papilionoideae, Swartzieae), a re-evaluation based on combined evidence from morphology and molecular data. Taxon 53: 1007-1018.
35. McMahon, M. & L. Hufford. 2002. Morphology and structural homology of corolla-androecium synorganization in the tribe Amorpheae (Fabaceae: Papilionoideae). American Journal of Botany 89: 1884-1898.
36. _ & _. 2004. Phylogeny of Amorpheae (Fabaceae: Papilionoideae). American Journal of Botany 91: 1219-1230.
37. _ & _. 2005. Evolution and development in the amorphoid clade (Amorpheae: Papilionoideae: Leguminosae): petal loss and dedifferentiation. International Journal of Plant Sciences 166: 383-396.
38. Munz, P. A. 1959. A California flora. University of California Press, Berkeley, USA.
39. Pennington, R. T., B. B. Klitgaard, H. Ireland & M. Lavin. 2000. New insights into floral evolution from molecular phylogenies. Pages 233-248. In: P. S. Herendeen & A. Bruneau, editors. Advances in legume systematics. Part 9. Royal Botanic Gardens, Kew, UK.
40. _, M. Lavin, H. Ireland, B. Klitgaard, J. Preston & J.-M. Hu. 2001. Phylogenetic relationships of basal papilionoid legumes based upon sequences of the chloroplast trnL intron. Systematic Botany 26: 537-556.
41. Polhill, R. M. 1981. Papilionoideae. Pages 191-204. In: R. M. Polhill & P. H. Raven, editors. Advances in legume systematics. Part 1. Royal Botanic Gardens, Kew, UK.
42. Posada, D. & K. A. Crandall. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817-818.
43. Prenner, G. 2004. The asymmetric androecium in Papilionoideae (Leguminosae): definition, occurrence, and possible systematic value. International Journal of Plant Sciences 165: 499-510.
44. Rydberg, P. A. 1919. Fabaceae: Psoraleae, part 1. North American Flora 24: 1-34, 40-64.
45. _. 1920. Fabaceae: Psoraleae, part 2. North American Flora 24: 65-136.
46. _. 1928a. Genera of North American Fabaceae III: tribe Psoraleae. American Journal of Botany 15: 195-203.
47. _. 1928b. Genera of North American Fabaceae IV: tribe Psoraleae (continued). American Journal of Botany 15: 425-432.
48. Scherson, R., H.-K. Choi, D. Cook & M. J. Sanderson. 2005. Phylogenetics of New World Astragalus: the utility of genomics technology in reconstructing phylogenies at low taxonomic levels. Brittonia 57: 354-366.
49. Shimodaira, H. & M. Hasegawa. 1999. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Molecular Biology and Evolution 16: 1114-1116.
50. Shreve, F. & I. L. Wiggins. 1964. Vegetation and flora of the Sonoran Desert. Stanford University Press, Stanford, California, USA.
51. Swofford, D. L. 2003. PAUP*: phylogenetic analysis using parsimony (*and other methods). Version 4.0b10. Sinauer, Sunderland, Massachusetts, USA.
52. Taubert, P. H. W. 1894. Galegeae Psoraliinae. Pages 263-265. In: A. Engler & K. Prantl, editors. Die Natürlichen pflanzenfamilien teile III, abteilungen 3.
53. Tucker, S. C. & C. H. Stirton. 1991. Development of the cymose inflorescence, cupulum and flower of Psoralea pinnata (Leguminosae: Papilionoideae: Psoraleeae). Botanical Journal of the Linnean Society 106: 209-227.
54. Turner, G. 1986. Comparative development of secretory cavities in the tribes Amorpheae and Psoraleeae (Leguminosae: Papilionoideae). American Journal of Botany 73: 1178-1192.
55. Wiggins, I. L. 1980. Flora of Baja California. Stanford University Press, Stanford, California, USA.
56. Wojciechowski, M. F., M. Lavin & M. J. Sanderson. 2004. A phylogeny of legumes (Leguminosae) based on analysis of the plastid matK gene resolves many well-supported subclades within the family. American Journal of Botany 91: 1846-1862.
57. Wolfe, A. D. & C. P. Randle. 2004. Recombination, heteroplasmy, haplotype polymorphism, and paralogy in plastid genes: implications for plant molecular systematics. Systematic Botany 29: 1011-1020.
58. Yang, Z. 1994. Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. Journal of Molecular Evolution 39: 306-314.