Genetic diversity of the species Debaryomyces hansenii and the use of chromosome polymorphism for typing of strains isolated from surface-ripened cheeses

Journal of Applied Microbiology

Volumn 97, Issue 1, 2004, Pages 205-213

  Petersen, K M ^a   Jespersen, L ^a  

^a UNIVERSITY OF COPENHAGEN   (Denmark)

Author keywords

Chromosome number; Chromosome polymorphism; Chromosome size; Debaryomyces hansenii; Genetic diversity

Indexed keywords

BIODIVERSITY; GENES; VALUE ENGINEERING;

CHROMOSOME NUMBERS; CHROMOSOME POLYMORPHISM; CHROMOSOME SIZE; CULTURE COLLECTION; DEBARYOMYCES HANSENII; GEL ELECTROPHORESIS TECHNIQUE; GENETICS DIVERSITIES; GENOME SIZES; PULSE FIELD GEL ELECTROPHORESIS; STRAIN TYPING;

ELECTROPHORESIS;

GENETIC VARIATION;

ARTICLE; BACTERIAL STRAIN; BACTERIUM CULTURE; BACTERIUM IDENTIFICATION; CHEESE RIPENING; CHEESEMAKING; CHROMOSOME BAND; CHROMOSOME NUMBER; CHROMOSOME POLYMORPHISM; DEBARYOMYCES HANSENII; GENE ISOLATION; GENETIC VARIABILITY; GENOME SIZE; MICROBIAL DIVERSITY; NONHUMAN; PULSED FIELD GEL ELECTROPHORESIS;

BACTERIA (MICROORGANISMS); DEBARYOMYCES; DEBARYOMYCES HANSENII; DEBARYOMYCES HANSENII VAR. FABRYI; DEBARYOMYCES HANSENII VAR. HANSENII;

EID: 3042763344     PISSN: 13645072     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-2672.2004.02293.x     Document Type: Article

References (43)

1. van der Aa Kuhle, A., Jespersen, L., Glover, R.L.K., Diawara, B. and Jakobsen, M. (2001) Identification and characterization of Saccharomyces cerevisiae strains isolated from West African sorghum beer. Yeast 18, 1069-1079.
2. Aiglé, M., Erbs, D. and Moll, M. (1984) Some molecular structures in the genome of lager brewing yeasts. Journal of the American Society of Brewing Chemistry 42, 1-7.
3. Andrighetto, C., Psomas, E., Tzanetakis, N., Suzzi, G. and Lombardi, A. (2000) Randomly amplified polymorphic DNA (RAPD) PCR for the identification of yeast isolated from dairy products. Letters in Applied Microbiology 30, 5-9.
4. Briones, A.I., Ubeda, J. and Grando, M.S. (1996) Differentiation of Saccharomyces cerevisiae strains isolated from fermenting must according to their karyotype patterns. International Journal of Food Microbiology 28, 369-377.
5. Carruba, G., Pontieri, E., Bernardis, F.D., Martino, P. and Cassone, A. (1991) DNA fingerprinting and electrophoretic karyotype of environmental and clinical isolates of Candida parapsilosis. Journal of Clinical Microbiology 29, 916-922.
6. Corredor, M., Davila, A. Gaillardin, C. and Casaregola, S. (2000) DNA probes specific for the yeast species Debaryomyces hansenii: useful tools for rapid identification. FEMS Microbiology Letters 193, 171-177.
7. Corredor, M., Davila, A., Casarègola, S. and Gaillardin, C. (2003) Chromomal polymorphism in the species Debaryomyces hansenii. Antonie van Leeiwenhoek 83, 215-222.
8. Deak, T., Chen, J. and Beuchat, L.R. (2000) Molecular characterization of Yarrowia lipolytica and Candida zeylanoides isolated from poultry. Applied and Environmental Alicrobiology 66, 4340-4344.
9. Doi, M., Homma, M., Chindamporn, A. and Tanaka, K. (1992) Estimation of chromosome number and size by pulsed-field gel electrophoresis (PFGE) in medically important Candida species. Journal of General Microbiology 138, 2243-2251.
10. Esteve-Zarzoso, B., Bellodh, C., Uruburu, F. and Querol, A. (1999) Identification of yeasts by RFLP analysis of the 5.8S rRNA gene and the two ribosomal internal transcribed spacers. International Journal of Systematic Bacteriology 49, 329-337.
11. Fleet, G.H. (1990) Yeast in dairy products - a review. Journal of Applied Bacteriology 68, 199-211.
12. Gente, S., Desmasures, N., Jacopin, C., Plessis, G., Beliard, M., Panoff, J.M. and Guéguen, M. (2002) Intra-species chromosome-length polymorphism in Geotrichum candidum revealed by pulsed field gel electrophoresis. International Journal of Food Microbiology 76, 127-134.
13. Hayford, A.E. and Jespersen, L. (1999) Characterization of Saccharomyces cerevisiae strains from spontaneously fermented maize dough by profiles of assimilation, chromosome polymorphism, PCR and MAL genotyping. Journal of Applied Microbiology 86, 284-294.
14. Jakobsen, M. and Narvhus, J. (1996) Yeast and their possible beneficial and negative effects on the quality of dairy products. International Dairy Journal 6, 755-768.
15. Jespersen, L., van der AaKuhle, A. and Petersen, K.M. (2000) Phenotypic and genetic diversity of Saccharomyces contaminants isolated from lager breweries and their phylogenetic relationship with brewing yeast. International Journal of Food Microbiology 60, 43-53.
16. Kurtzman, C.P. (1998) Pichia E.C. Hansen emend. Kurtzman. In The Yeasts; a Taxonomic Study ed. Kurtzman, C.P. and Fell, J.W. pp. 273-352. Amsterdam: Elsevier.
17. Lachance, M.A. (1998) Kluyveromyces van der Walt emend, van der Walt. In The Yeasts; a Taxonomic Study ed. Kurtzman, C.P. and Fell, J.W. pp. 227-247. Amsterdam: Elsevier.
18. Lee, S.Y. and Knudsen, F.B. (1985) Differentiation of brewery yeast strains by restriction endonuclease analysis of their mitochondrial DNA. Journal of the Institute of Brewing 91, 169-173.
19. Lenoir, J. (1984) The surface flora and its role in the ripening of cheese. International Dairy Federation Bulletin 171, 3-20.
20. Lerlercq-Perlat, M.N., Oumer, A., Bergere, J.L., Spinnler, H.E. and Corrieu, G. (1999) Growth of Debaryomyces hansenii on a bacterial surface-ripened soft cheese. Journal of Dairy Research 66, 271-281.
21. Meyer, S.A., Payne, R.W. and Yarrow, D. (1998) Candida Berkhout. In The Yeasts; a Taxonomic Study ed. Kurtzman, C.P. and Fell, J.W. pp. 454-573. Amsterdam: Elsevier.
22. Monod, M., Porchet, S., Baudraz-Rosselet, F. and Frenk, E. (1990) The identification of pathogenic yeast strains by electrophoretic analysis of their chromosomes. Journal of Medical Microbiology 32, 123-129.
23. Nakase, T. and Suzuki, M. (1985a) Taxonomic studies on Debaryomyces hansenii (Zopf) Lodder Kreger-van Rij and related species. I. Chemotaxonomic investigations. Journal of General Applied Microbiology 31, 49-69.
24. Nakase, T. and Suzuki, M. (1985b) Taxonomic studies on Debaryomyces hansenii (Zopf) Lodder Kreger-van Rij and related species. II. Practical discrimination and nomenclature. Journal of General Applied Microbiology 31, 71-86.
25. Nakase, T., Suzuki, M., Phaff, H.J. and Kurtzman, C.P. (1998) Debaryomyces Lodder & Kreger-van Rij Nom. Cons. In The Yeast; a Taxonomic Study ed. Kurtzman, C.P. and Fell, J.W. pp. 157-163. Amsterdam: Elsevier.
26. Naumov, G.I., Naumova, E.S. and Sniegowski, P.D. (1998) Saccharomyces paradoxus and Saccharomyces cerevisiae are associated with exudases of North American oaks. Canadian Journal of Microbiology 44, 1045-1050.
27. Naumov, G.I., Naumova, E.S. and Schnürer, J. (2001) Genetic chracterization of the nonconventional yeast Hansenula anomala. Research in Microbiology 152, 551-562.
28. Nishikawa, A., Sugita, T. and Shinoda, T. (1998) Rapid identification of D. hansenii/Candida famata by polymerase chain reaction. Medical Mycology 37, 101-104.
29. Olson, M.V. (1991) Genome structure and organization in Saccharomyces cerevisiae. In The Molecular and Cellular Biology of the Yeast Saccharomyces: Genome Dynamics, Protein Synthesis, and Energitics ed. Broach, J.R., Pringle, J. and Jones, E. pp. 1-39. Cold Spring Habor, NY: Cold Spring Habor Laboratory Press.
30. Pataro, C., Guerra, J.B., Petrillo-Peixoto, M.L., Mendonça-Hagler, L.C., Linardi, V.R. and Rosa, C.A. (2000) Yeast communities and genetic polymorphism of Saccharomyces cerevisiae strains associated with artisanal fermentation in Brazil. Journal of Applied Microbiology 89, 24-31.
31. Petersen, K.M., Møller, P.L. and Jespersen, L. (2001) DNA typing methods for differentiation of Debaryomyces hansenii strains and other yeast related to surface ripened cheeses. International Journal of Food Microbiology 69, 11-24.
32. Petersen, K.M., Westall, S. and Jespersen, L. (2002) Microbial succession of Debaryomyces hansenii strains during the production of surface ripened cheeses. Journal of Dairy Science 85, 478-486.
33. Querol, A., Barrio, E. and Ramon, D. (1994) Population dynamics of natural Saccharomyces strains during wine fermentations. International Journal of Food Microbiology 21, 315-323.
34. Romano, A., Casaregola, S., Torre, P. and Gaillardin, C. (1996) Use of RAPD and mitochondrial DNA RFLP for typing of Candida zeylanoides and Debaryomyces hansenii yeast strains isolated from cheese. Systematic and Applied Microbiology 19, 255-264.
35. Sørensen, B.B. and Jakobsen, M. (1997) The combined effect of temperature, pH and NaCl on growth of Debaryomyces hansenii analysed by flow cytometry and predictive microbiology. International Journal of Food Microbiology 34, 209-220.
36. Seiler, H. and Busse, M. (1990) The yeasts of cheese brines. International Journal of Food Microbiology 11, 289-304.
37. Sor, F. and Fukuhara, H. (1989) Analysis of chromosomal DNA patterns of the genus Kluyveromyces. Yeast 5, 1-10.
38. van den Tempel, T. and Jakobsen, M. (2000) The technological characteristics of Debaryomyces hansenii and Yarrowia lipolytica and their potential as starter cultures for production of Danablu. International Dairy Journal 10, 263-270.
39. Vezinhet, F., Blondin, B. and Hallet, J.N. (1990) Chromosomal DNA patterns and mitochondrial DNA polymorphism as tools for identification of ecological strains of Saccharomyces cerevisiae. Applied Microbiology and Biotechnology 32, 568-571.
40. Vezinhet, F., Hallet, J-N. Valade, M. and Poulard, A. (1992) Ecological survey of wine yeast strains by molecular methods of identification. American Journal of Enology and Viticulture 43, 83-86.
41. van der Walt, J.P., Taylor, M.B. and Liebenberg, N.V.D.W. (1977) Ploidy, ascus formation and recombination in Torulaspora (Debaryomyces) hansenii. Antonie van Leeuwenhoek 43, 205-218.
42. Wenning, M., Seiler, H. and Scherer, S. (2002) Fourier-transform infrared microspectroscopy, a novel and rapid tool for identification of yeasts. Applied and Environmental Microbiology 68, 4717-4721.
43. Zolan, M.E. (1995) Chromosome-length polymorphism in fungi. Microbiology Review 59, 686-698.