메뉴 건너뛰기




Volumn 32, Issue 1, 2004, Pages 264-273

Assessing the passerine "tapestry": Phylogenetic relationships of the Muscicapoidea inferred from nuclear DNA sequences

Author keywords

Muscicapoidea; Nuclear DNA; Passeriformes; Phylogeny; RAG 1

Indexed keywords

DNA;

EID: 3042698700     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ympev.2003.12.002     Document Type: Article
Times cited : (53)

References (56)
  • 1
    • 0008236285 scopus 로고
    • The genera of starlings and their relationships
    • Amadon D. The genera of starlings and their relationships. Am. Mus. Novit. 1247:1943;1-16
    • (1943) Am. Mus. Novit. , vol.1247 , pp. 1-16
    • Amadon, D.1
  • 2
    • 3042715848 scopus 로고
    • Remarks on the starlings, family Sturnidae
    • Amadon D. Remarks on the starlings, family Sturnidae. Am. Mus. Novit. 1803:1956;1-41
    • (1956) Am. Mus. Novit. , vol.1803 , pp. 1-41
    • Amadon, D.1
  • 3
    • 0000171646 scopus 로고
    • The application of syringeal morphology to the classification of the Old World Insects Eaters (Muscicapidae)
    • Ames P.L. The application of syringeal morphology to the classification of the Old World Insects Eaters (Muscicapidae). Bonn. Zool. Beitr. 26:1975;107-134
    • (1975) Bonn. Zool. Beitr. , vol.26 , pp. 107-134
    • Ames, P.L.1
  • 4
    • 3042835717 scopus 로고
    • Phylogeny of the waxwings and allied birds
    • Arvey M.D. Phylogeny of the waxwings and allied birds. Publ. Univ. Kansas Mus. Nat. Hist. 3:1951;473-530
    • (1951) Publ. Univ. Kansas Mus. Nat. Hist. , vol.3 , pp. 473-530
    • Arvey, M.D.1
  • 5
    • 0842347322 scopus 로고    scopus 로고
    • A phylogenetic hypothesis for passerine birds: Taxonomic and biogeographic implications of an analysis of nuclear DNA sequence data
    • Barker F.K, Barrowclough G.F, Groth J.G. A phylogenetic hypothesis for passerine birds: taxonomic and biogeographic implications of an analysis of nuclear DNA sequence data. Proc. R. Soc. Lond. B. 269:2002;295-308
    • (2002) Proc. R. Soc. Lond. B , vol.269 , pp. 295-308
    • Barker, F.K.1    Barrowclough, G.F.2    Groth, J.G.3
  • 7
    • 0006116006 scopus 로고
    • Adaptations for food-getting in the American blackbirds
    • Beecher W.J. Adaptations for food-getting in the American blackbirds. Wilson Bull. 68:1951;411-440
    • (1951) Wilson Bull. , vol.68 , pp. 411-440
    • Beecher, W.J.1
  • 8
    • 0001160784 scopus 로고
    • A phylogeny of the oscines
    • Beecher W.J. A phylogeny of the oscines. Auk. 70:1953;270-333
    • (1953) Auk , vol.70 , pp. 270-333
    • Beecher, W.J.1
  • 9
    • 0000400817 scopus 로고
    • Feeding adaptations and evolution in the starlings
    • Beecher W.J. Feeding adaptations and evolution in the starlings. Bull. Chicago Acad. Sci. 11:1978;269-298
    • (1978) Bull. Chicago Acad. Sci. , vol.11 , pp. 269-298
    • Beecher, W.J.1
  • 11
    • 11944257314 scopus 로고
    • Ancestral areas: A cladistic reinterpretation of the center of origin concept
    • Bremer K. Ancestral areas: a cladistic reinterpretation of the center of origin concept. Syst. Biol. 41:1992;436-445
    • (1992) Syst. Biol. , vol.41 , pp. 436-445
    • Bremer, K.1
  • 12
    • 0029538166 scopus 로고
    • Ancestral areas: Optimization and probability
    • Bremer K. Ancestral areas: optimization and probability. Syst. Biol. 44:1995;255-259
    • (1995) Syst. Biol. , vol.44 , pp. 255-259
    • Bremer, K.1
  • 13
    • 0000116740 scopus 로고
    • A method for deducing branching sequences in phylogeny
    • Camin J.H, Sokal R.R. A method for deducing branching sequences in phylogeny. Evolution. 19:1965;311-326
    • (1965) Evolution , vol.19 , pp. 311-326
    • Camin, J.H.1    Sokal, R.R.2
  • 15
    • 0002481009 scopus 로고    scopus 로고
    • A phylogeny for the African starlings (Sturnidae)
    • Craig A.J.F.K. A phylogeny for the African starlings (Sturnidae). Ostrich. 68:1997;114-116
    • (1997) Ostrich , vol.68 , pp. 114-116
    • Craig, F.K.1
  • 16
    • 3042833409 scopus 로고
    • The arrangements and structure of feather melanin granules as a taxonomic character in African starlings (Sturnidae)
    • Craig A.J.F.K, Hartley A.H. The arrangements and structure of feather melanin granules as a taxonomic character in African starlings (Sturnidae). Auk. 102:1985;629-632
    • (1985) Auk , vol.102 , pp. 629-632
    • Craig, F.K.1    Hartley, A.H.2
  • 18
    • 0242505896 scopus 로고    scopus 로고
    • Phylogeny of passerida (Aves: Passeriformes) based on nuclear and mitochondrial sequence data
    • Ericson P.G.P, Johansson U.S. Phylogeny of passerida (Aves: Passeriformes) based on nuclear and mitochondrial sequence data. Mol. Phylogenet. Evol. 29:2003;126-138
    • (2003) Mol. Phylogenet. Evol. , vol.29 , pp. 126-138
    • Ericson, G.P.1    Johansson, U.S.2
  • 20
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using bootstrap
    • Felsenstein J. Confidence limits on phylogenies: an approach using bootstrap. Evolution. 39:1985;783-791
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 21
    • 0024152983 scopus 로고
    • Phylogenies from molecular sequences: Inference and reliability
    • Felsenstein J. Phylogenies from molecular sequences: inference and reliability. Annu. Rev. Genet. 22:1988;521-565
    • (1988) Annu. Rev. Genet. , vol.22 , pp. 521-565
    • Felsenstein, J.1
  • 22
    • 0034079389 scopus 로고    scopus 로고
    • Statistical tests of gamma-distributed rate in heterogeneity in models of sequence evolution in phylogenetics
    • Goldman N, Whelan S. Statistical tests of gamma-distributed rate in heterogeneity in models of sequence evolution in phylogenetics. Mol. Biol. Evol. 17:2000;975-978
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 975-978
    • Goldman, N.1    Whelan, S.2
  • 23
    • 0034351387 scopus 로고    scopus 로고
    • Likelihood-based tests of topologies in phylogenetics
    • Goldman N, Anderson J.P, Rodrigo A.G. Likelihood-based tests of topologies in phylogenetics. Syst. Biol. 49:2000;652-676
    • (2000) Syst. Biol. , vol.49 , pp. 652-676
    • Goldman, N.1    Anderson, J.P.2    Rodrigo, A.G.3
  • 24
    • 0033159606 scopus 로고    scopus 로고
    • Basal divergences in birds and the phylogenetic utility of the nuclear RAG-1 gene
    • Groth J.G, Barrowclough G.F. Basal divergences in birds and the phylogenetic utility of the nuclear RAG-1 gene. Mol. Phylogenet. Evol. 12:1999;115-123
    • (1999) Mol. Phylogenet. Evol. , vol.12 , pp. 115-123
    • Groth, J.G.1    Barrowclough, G.F.2
  • 25
    • 0003652610 scopus 로고
    • A Complete Checklist of the Birds of the World
    • London: Academic Press
    • Howard R, Moore A. A Complete Checklist of the Birds of the World. second ed. 1994;Academic Press, London
    • (1994) Second Ed.
    • Howard, R.1    Moore, A.2
  • 26
    • 0034849408 scopus 로고    scopus 로고
    • MrBayes: Bayesian inference of phylogenetic trees
    • Huelsenbeck J.P, Ronquist F. MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics. 17:2001;754-755
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 27
    • 0036806280 scopus 로고    scopus 로고
    • Potential applications and pitfalls of Bayesian inference of phylogeny
    • Huelsenbeck J.P, Larget B, Miller R.E, Ronquist F. Potential applications and pitfalls of Bayesian inference of phylogeny. Syst. Biol. 51:2002;673-688
    • (2002) Syst. Biol. , vol.51 , pp. 673-688
    • Huelsenbeck, J.P.1    Larget, B.2    Miller, R.E.3    Ronquist, F.4
  • 28
    • 0035100797 scopus 로고    scopus 로고
    • Molecular systematics and biogeography of Antillean thrashers, tremblers, and mockingbirds (Aves: Mimidae)
    • Hunt J.S, Bermingham E, Ricklefs R.E. Molecular systematics and biogeography of Antillean thrashers, tremblers, and mockingbirds (Aves: Mimidae). Auk. 118:2001;35-55
    • (2001) Auk , vol.118 , pp. 35-55
    • Hunt, J.S.1    Bermingham, E.2    Ricklefs, R.E.3
  • 29
    • 0035064818 scopus 로고    scopus 로고
    • Phylogeny of major lineages of suboscines (Passeriformes) analysed by nuclear DNA sequence data
    • Irestedt M, Johansson U.S, Parsons T.J, Ercison P.G.P. Phylogeny of major lineages of suboscines (Passeriformes) analysed by nuclear DNA sequence data. J. Avian Biol. 32:2001;15-25
    • (2001) J. Avian Biol. , vol.32 , pp. 15-25
    • Irestedt, M.1    Johansson, U.S.2    Parsons, T.J.3    Ercison, G.P.4
  • 30
    • 0000732090 scopus 로고
    • Evolution of the protein molecules
    • H.N. Munro. New York: Academic Press
    • Jukes T.H, Cantor C.R. Evolution of the protein molecules. Munro H.N. Mammalian Protein Metabolism. 1969;21-132 Academic Press, New York
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 32
    • 0002683334 scopus 로고
    • A classification of recent birds
    • Mayr E, Amadon D. A classification of recent birds. Am. Mus. Novit. 1496:1951;1-42
    • (1951) Am. Mus. Novit. , vol.1496 , pp. 1-42
    • Mayr, E.1    Amadon, D.2
  • 35
    • 0034106726 scopus 로고    scopus 로고
    • Appropriate likelihood ratio tests and marginal distributions for evolutionary tree models with constraints on parameters
    • Ota R, Waddall P.J, Hasegawa M, Shimodaira H, Kishino H. Appropriate likelihood ratio tests and marginal distributions for evolutionary tree models with constraints on parameters. Mol. Biol. Evol. 17:2000;798-803
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 798-803
    • Ota, R.1    Waddall, P.J.2    Hasegawa, M.3    Shimodaira, H.4    Kishino, H.5
  • 36
    • 0029528882 scopus 로고
    • Ancient ecological diversification explains life-history variation among living birds
    • Owens I.P.F, Bennett P. Ancient ecological diversification explains life-history variation among living birds. Proc. R. Soc. Lond. B. 261:1995;227-232
    • (1995) Proc. R. Soc. Lond. B , vol.261 , pp. 227-232
    • Owens, P.F.1    Bennett, P.2
  • 37
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: Testing the model of DNA substitution
    • Posada D, Crandall K.A. Modeltest: testing the model of DNA substitution. Bioinformatics. 14:1998;817-818
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 38
    • 0030773749 scopus 로고    scopus 로고
    • A nonparametric approach to estimating divergence times in the absence of rate constancy
    • Sanderson M.J. A nonparametric approach to estimating divergence times in the absence of rate constancy. Mol. Biol. Evol. 14:1997;1218-1231
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 1218-1231
    • Sanderson, M.J.1
  • 39
    • 0003202744 scopus 로고    scopus 로고
    • Phylogeny in studies of bird ecology, behavior, and morphology
    • D.P. Mindell. London: Academic Press
    • Sheldon F.H, Whittingham L.A. Phylogeny in studies of bird ecology, behavior, and morphology. Mindell D.P. Avian Molecular Evolution and Systematics. 1997;279-299 Academic Press, London
    • (1997) Avian Molecular Evolution and Systematics , pp. 279-299
    • Sheldon, F.H.1    Whittingham, L.A.2
  • 40
    • 0036623258 scopus 로고    scopus 로고
    • An approximately unbiased test of phylogenetic tree selection
    • Shimodaira H. An approximately unbiased test of phylogenetic tree selection. Syst. Biol. 51:2002;492-508
    • (2002) Syst. Biol. , vol.51 , pp. 492-508
    • Shimodaira, H.1
  • 41
    • 0001119775 scopus 로고    scopus 로고
    • Multiple comparisons of log-likelihoods with applications to phylogenetic inference
    • Shimodaira H, Hasegawa M. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol. Biol. Evol. 13:1999;964-969
    • (1999) Mol. Biol. Evol. , vol.13 , pp. 964-969
    • Shimodaira, H.1    Hasegawa, M.2
  • 42
    • 0036139287 scopus 로고    scopus 로고
    • CONSEL: For assessing the confidence of phylogenetic tree selection
    • Shimodaira H, Hasegawa M. CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics. 17:2001;1246-1247
    • (2001) Bioinformatics , vol.17 , pp. 1246-1247
    • Shimodaira, H.1    Hasegawa, M.2
  • 43
    • 0000787344 scopus 로고
    • A comparative study of the egg-white proteins of the passerine birds
    • Sibley C.G. A comparative study of the egg-white proteins of the passerine birds. Peabody Mus. Nat. Hist. Yale Univ. Bull. 32:1970;1-131
    • (1970) Peabody Mus. Nat. Hist. Yale Univ. Bull. , vol.32 , pp. 1-131
    • Sibley, C.G.1
  • 44
    • 3042792934 scopus 로고
    • The relationships of the silky flycatchers
    • Sibley C.G. The relationships of the silky flycatchers. Auk. 90:1973;394-410
    • (1973) Auk , vol.90 , pp. 394-410
    • Sibley, C.G.1
  • 45
    • 0043214909 scopus 로고
    • The relationships of the starlings (Sturnidae: Sturnini) and the mockingbirds (Sturnidae: Mimini)
    • Sibley C.G, Ahlquist J.E. The relationships of the starlings (Sturnidae: Sturnini) and the mockingbirds (Sturnidae: Mimini). Auk. 101:1984;230-243
    • (1984) Auk , vol.101 , pp. 230-243
    • Sibley, C.G.1    Ahlquist, J.E.2
  • 48
    • 0031903782 scopus 로고    scopus 로고
    • Recognizing and testing homology of courtship display in storks (Aves: Ciconiiformes: Ciconiidae)
    • Slikas B. Recognizing and testing homology of courtship display in storks (Aves: Ciconiiformes: Ciconiidae). Evolution. 52:1998;884-893
    • (1998) Evolution , vol.52 , pp. 884-893
    • Slikas, B.1
  • 49
    • 0842347386 scopus 로고
    • Relationships of some families of the suborder Passeres (songbirds) as indicated by comparisons of tissue proteins
    • Stallcup W.B. Relationships of some families of the suborder Passeres (songbirds) as indicated by comparisons of tissue proteins. J. Grad. Res. Center, Southern Methodist Univ. 29:1961;43-65
    • (1961) J. Grad. Res. Center, Southern Methodist Univ. , vol.29 , pp. 43-65
    • Stallcup, W.B.1
  • 50
    • 41049111540 scopus 로고    scopus 로고
    • Inferring confidence sets of possibly misspecified gene trees
    • Strimmer K, Rambaut A. Inferring confidence sets of possibly misspecified gene trees. Proc. R. Soc. Lond. B. 269:2002;137-142
    • (2002) Proc. R. Soc. Lond. B , vol.269 , pp. 137-142
    • Strimmer, K.1    Rambaut, A.2
  • 53
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
    • Tamura K, Nei M. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 10:1993;512-526
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 512-526
    • Tamura, K.1    Nei, M.2
  • 54
    • 0036789563 scopus 로고    scopus 로고
    • Molecular phylogenetics and the historical biogeography of dippers (Cinclus)
    • Voelker G. Molecular phylogenetics and the historical biogeography of dippers (Cinclus). Ibis. 144:2002;577-584
    • (2002) Ibis , vol.144 , pp. 577-584
    • Voelker, G.1
  • 55
    • 0000159846 scopus 로고
    • List of Holarctic bird species. Passerines
    • 376-406
    • Voous K.H. List of Holarctic bird species. Passerines. Ibis. 119:1977;223-250. 376-406
    • (1977) Ibis , vol.119 , pp. 223-250
    • Voous, K.H.1
  • 56
    • 0001913259 scopus 로고
    • A classification for the birds of the world
    • Wetmore A. A classification for the birds of the world. Smithson. Misc. Coll. 139:1960;1-37
    • (1960) Smithson. Misc. Coll. , vol.139 , pp. 1-37
    • Wetmore, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.