메뉴 건너뛰기




Volumn 13, Issue 4, 2004, Pages 177-184

Defining the mandate of tuberculosis research in a postgenomic era

Author keywords

In silico; Mycobacterium; Tuberculosis

Indexed keywords

BCG VACCINE; DNA VACCINE;

EID: 3042685442     PISSN: 10117571     EISSN: None     Source Type: Journal    
DOI: 10.1159/000078312     Document Type: Review
Times cited : (16)

References (60)
  • 1
    • 0345504211 scopus 로고    scopus 로고
    • Benchmarking PSI-BLAST in genome annotation
    • Muller A, MacCallum RM, Sternberg MJ: Benchmarking PSI-BLAST in genome annotation. J Mol Biol 1999;293:1257-1271.
    • (1999) J Mol Biol , vol.293 , pp. 1257-1271
    • Muller, A.1    MacCallum, R.M.2    Sternberg, M.J.3
  • 2
    • 0000875752 scopus 로고    scopus 로고
    • Accurate prediction of protein functional class from sequence in the Mycobacterium tuberculosis and Escherichia coli genomes using data mining
    • King RD, Karwath A, Clare A, Dehaspe L: Accurate prediction of protein functional class from sequence in the Mycobacterium tuberculosis and Escherichia coli genomes using data mining. Yeast 2000;17:283-293.
    • (2000) Yeast , vol.17 , pp. 283-293
    • King, R.D.1    Karwath, A.2    Clare, A.3    Dehaspe, L.4
  • 4
    • 0036774642 scopus 로고    scopus 로고
    • Reannotation of the genome sequence of Mycobacterium tuberculosis H37Rv
    • Camus JC, Pryor MJ, Medigue C, Cole ST: Reannotation of the genome sequence of Mycobacterium tuberculosis H37Rv. Microbiology 2002;148:2967-2973.
    • (2002) Microbiology , vol.148 , pp. 2967-2973
    • Camus, J.C.1    Pryor, M.J.2    Medigue, C.3    Cole, S.T.4
  • 5
    • 0034005701 scopus 로고    scopus 로고
    • Functional classification of cNMP-binding proteins and nucleotide cyclases with implications for novel regulatory pathways in Mycobacterium tuberculosis
    • McCue LA, McDonough KA, Lawrence CE: Functional classification of cNMP-binding proteins and nucleotide cyclases with implications for novel regulatory pathways in Mycobacterium tuberculosis. Genome Res 2000;10:204-219.
    • (2000) Genome Res , vol.10 , pp. 204-219
    • McCue, L.A.1    McDonough, K.A.2    Lawrence, C.E.3
  • 6
    • 0034059725 scopus 로고    scopus 로고
    • Identification of secreted proteins of Mycobacterium tuberculosis by a bioinformatic approach
    • Gomez M, Johnson S, Gennaro ML: Identification of secreted proteins of Mycobacterium tuberculosis by a bioinformatic approach. Infect Immun 2000;68:2323-2327.
    • (2000) Infect Immun , vol.68 , pp. 2323-2327
    • Gomez, M.1    Johnson, S.2    Gennaro, M.L.3
  • 8
    • 0032401911 scopus 로고    scopus 로고
    • Analysis of complete genomes suggests that many prokaryotes do not rely on hairpin formation in transcription termination
    • Washio T, Sasayama J, Tomita M: Analysis of complete genomes suggests that many prokaryotes do not rely on hairpin formation in transcription termination. Nucleic Acids Res 1998;26:5456-5463.
    • (1998) Nucleic Acids Res , vol.26 , pp. 5456-5463
    • Washio, T.1    Sasayama, J.2    Tomita, M.3
  • 9
    • 0035834664 scopus 로고    scopus 로고
    • Alternate paradigm for intrinsic transcription termination in eubacteria
    • Unniraman S, Prakash R, Nagaraja V: Alternate paradigm for intrinsic transcription termination in eubacteria. J Biol Chem 2001;276:41850-41855.
    • (2001) J Biol Chem , vol.276 , pp. 41850-41855
    • Unniraman, S.1    Prakash, R.2    Nagaraja, V.3
  • 12
    • 0037323190 scopus 로고    scopus 로고
    • Did the loss of sigma factors initiate pseudogene accumulation in M. leprae?
    • Madan Babu M: Did the loss of sigma factors initiate pseudogene accumulation in M. leprae? Trends Microbiol 2003;11:59-61.
    • (2003) Trends Microbiol , vol.11 , pp. 59-61
    • Madan Babu, M.1
  • 13
    • 0031923751 scopus 로고    scopus 로고
    • Use of a Mycobacterium tuberculosis H37Rv bacterial artificial chromosome library for genome mapping, sequencing, and comparative genomics
    • Brosch R, Gordon SV, Billault A, Garnier T, Eiglmeier K, Soravito C, Barrell BG, Cole ST: Use of a Mycobacterium tuberculosis H37Rv bacterial artificial chromosome library for genome mapping, sequencing, and comparative genomics. Infect Immun 1998;66:2221-2229.
    • (1998) Infect Immun , vol.66 , pp. 2221-2229
    • Brosch, R.1    Gordon, S.V.2    Billault, A.3    Garnier, T.4    Eiglmeier, K.5    Soravito, C.6    Barrell, B.G.7    Cole, S.T.8
  • 14
    • 0036437048 scopus 로고    scopus 로고
    • Loss of RD1 contributed to the attenuation of the live tuberculosis vaccines Mycobacterium bovis BCG and Mycobacterium microti
    • Pym AS, Brodin P, Brosch R, Huerre M, Cole ST: Loss of RD1 contributed to the attenuation of the live tuberculosis vaccines Mycobacterium bovis BCG and Mycobacterium microti. Mol Microbiol 2002;46:709-717.
    • (2002) Mol Microbiol , vol.46 , pp. 709-717
    • Pym, A.S.1    Brodin, P.2    Brosch, R.3    Huerre, M.4    Cole, S.T.5
  • 18
    • 0001633794 scopus 로고    scopus 로고
    • Comparative genomics uncovers large tandem chromosomal duplications in Mycobacterium bovis BCG Pasteur
    • Brosch R, Gordon SV, Buchrieser C, Pym AS, Garnier T, Cole ST: Comparative genomics uncovers large tandem chromosomal duplications in Mycobacterium bovis BCG Pasteur. Yeast 2000;17:111-123.
    • (2000) Yeast , vol.17 , pp. 111-123
    • Brosch, R.1    Gordon, S.V.2    Buchrieser, C.3    Pym, A.S.4    Garnier, T.5    Cole, S.T.6
  • 19
    • 0036889110 scopus 로고    scopus 로고
    • Molecular epidemiology of Mycobacterium tuberculosis and its relevance to the surveillance and control of TB: An e-debate
    • Tazi L, Kreiswirth B, Carriere C, Tibayrenc M: Molecular epidemiology of Mycobacterium tuberculosis and its relevance to the surveillance and control of TB: An e-debate. Infect Genet Evol 2002;2:153-158.
    • (2002) Infect Genet Evol , vol.2 , pp. 153-158
    • Tazi, L.1    Kreiswirth, B.2    Carriere, C.3    Tibayrenc, M.4
  • 20
    • 0041846506 scopus 로고    scopus 로고
    • Molecular epidemiology of infectious diseases: A case for increased surveillance
    • Hasnain SE: Molecular epidemiology of infectious diseases: A case for increased surveillance. Bull World Health Organ 2003;81:474.
    • (2003) Bull World Health Organ , vol.81 , pp. 474
    • Hasnain, S.E.1
  • 23
    • 0037298854 scopus 로고    scopus 로고
    • Genome sequence based, comparative analysis of the fluorescent amplified fragment length polymorphisms (FAFLP) of tubercle bacilli from seals provides molecular evidence for a new species within the Mycobacterium tuberculosis complex
    • Ahmed N, Alam M, Abdul Majeed A, Asad Rahman S, Cataldi A, Cousins D, Hasnain SE: Genome sequence based, comparative analysis of the fluorescent amplified fragment length polymorphisms (FAFLP) of tubercle bacilli from seals provides molecular evidence for a new species within the Mycobacterium tuberculosis complex. Infect Genet Evol 2003;2:193-199.
    • (2003) Infect Genet Evol , vol.2 , pp. 193-199
    • Ahmed, N.1    Alam, M.2    Abdul Majeed, A.3    Asad Rahman, S.4    Cataldi, A.5    Cousins, D.6    Hasnain, S.E.7
  • 24
    • 12444298940 scopus 로고    scopus 로고
    • Distinctiveness of Mycobacterium tuberculosis genotypes from human immunodeficiency virus type 1-seropositive and -seronegative patients in Lima, Peru
    • Ahmed N, Caviedes L, Alam M, Rao KR, Sangal V, Sheen P, Gilman RH, Hasnain SE: Distinctiveness of Mycobacterium tuberculosis genotypes from human immunodeficiency virus type 1-seropositive and -seronegative patients in Lima, Peru. J Clin Microbiol 2003;41:1712-1716.
    • (2003) J Clin Microbiol , vol.41 , pp. 1712-1716
    • Ahmed, N.1    Caviedes, L.2    Alam, M.3    Rao, K.R.4    Sangal, V.5    Sheen, P.6    Gilman, R.H.7    Hasnain, S.E.8
  • 25
    • 0033776942 scopus 로고    scopus 로고
    • Molecular characterization of Mycobacterium abscessus strains isolated from a hospital outbreak
    • Raman LA, Siddiqi N, Shamim M, Deb M, Mehta G, Hasnain SE: Molecular characterization of Mycobacterium abscessus strains isolated from a hospital outbreak. Emerg Infect Dis 2000;6:561-562.
    • (2000) Emerg Infect Dis , vol.6 , pp. 561-562
    • Raman, L.A.1    Siddiqi, N.2    Shamim, M.3    Deb, M.4    Mehta, G.5    Hasnain, S.E.6
  • 29
    • 0036270739 scopus 로고    scopus 로고
    • Evaluation of a nutrient starvation model of Mycobacterium tuberculosis persistence by gene and protein expression profiling
    • Betts JC, Lukey PT, Robb LC, McAdam RA, Duncan K: Evaluation of a nutrient starvation model of Mycobacterium tuberculosis persistence by gene and protein expression profiling. Mol Microbiol 2002;43:717-731.
    • (2002) Mol Microbiol , vol.43 , pp. 717-731
    • Betts, J.C.1    Lukey, P.T.2    Robb, L.C.3    McAdam, R.A.4    Duncan, K.5
  • 30
    • 0036299641 scopus 로고    scopus 로고
    • Microarray analysis of the Mycobacterium tuberculosis transcriptional response to the acidic conditions found in phagosomes
    • Fisher MA, Plikaytis BB, Shinnick TM: Microarray analysis of the Mycobacterium tuberculosis transcriptional response to the acidic conditions found in phagosomes. J Bacteriol 2002;184:4025-4032.
    • (2002) J Bacteriol , vol.184 , pp. 4025-4032
    • Fisher, M.A.1    Plikaytis, B.B.2    Shinnick, T.M.3
  • 31
    • 0034903883 scopus 로고    scopus 로고
    • The Mycobacterium tuberculosis ECF sigma factor sigmaE: Role in global gene expression and survival in macrophages
    • Manganelli R, Voskuil MI, Schoolnik GK, Smith I: The Mycobacterium tuberculosis ECF sigma factor sigmaE: Role in global gene expression and survival in macrophages. Mol Microbiol 2001;41:423-437.
    • (2001) Mol Microbiol , vol.41 , pp. 423-437
    • Manganelli, R.1    Voskuil, M.I.2    Schoolnik, G.K.3    Smith, I.4
  • 32
    • 0034805644 scopus 로고    scopus 로고
    • The alternative sigma factor SigH regulates major components of oxidative and heat stress responses in Mycobacterium tuberculosis
    • Raman S, Song T, Puyang X, Bardarov S, Jacobs WR Jr, Husson RN: The alternative sigma factor SigH regulates major components of oxidative and heat stress responses in Mycobacterium tuberculosis. J Bacteriol 2001;183:6119-6125.
    • (2001) J Bacteriol , vol.183 , pp. 6119-6125
    • Raman, S.1    Song, T.2    Puyang, X.3    Bardarov, S.4    Jacobs Jr., W.R.5    Husson, R.N.6
  • 33
    • 0032779309 scopus 로고    scopus 로고
    • A mycobacterial extracytoplasmic sigma factor involved in survival following heat shock and oxidative stress
    • Fernandes ND, Wu QL, Kong D, Puyang X, Garg S, Husson RN: A mycobacterial extracytoplasmic sigma factor involved in survival following heat shock and oxidative stress. J Bacteriol 1999;181:4266-4274.
    • (1999) J Bacteriol , vol.181 , pp. 4266-4274
    • Fernandes, N.D.1    Wu, Q.L.2    Kong, D.3    Puyang, X.4    Garg, S.5    Husson, R.N.6
  • 34
    • 0036065206 scopus 로고    scopus 로고
    • Role of the extracytoplasmic-function sigma factor sigma( H) in Mycobacterium tuberculosis global gene expression
    • Manganelli R, Voskuil MI, Schoolnik GK, Dubnau E, Gomez M, Smith I: Role of the extracytoplasmic-function sigma factor sigma( H) in Mycobacterium tuberculosis global gene expression. Mol Microbiol 2002;45:365-374.
    • (2002) Mol Microbiol , vol.45 , pp. 365-374
    • Manganelli, R.1    Voskuil, M.I.2    Schoolnik, G.K.3    Dubnau, E.4    Gomez, M.5    Smith, I.6
  • 36
    • 0036081140 scopus 로고    scopus 로고
    • ideR, an essential gene in Mycobacterium tuberculosis: Role of IdeR in irondependent gene expression, iron metabolism, and oxidative stress response
    • Rodriguez GM, Voskuil MI, Gold B, Schoolnik GK, Smith I: ideR, an essential gene in Mycobacterium tuberculosis: Role of IdeR in irondependent gene expression, iron metabolism, and oxidative stress response. Infect Immun 2002;70:3371-3381.
    • (2002) Infect Immun , vol.70 , pp. 3371-3381
    • Rodriguez, G.M.1    Voskuil, M.I.2    Gold, B.3    Schoolnik, G.K.4    Smith, I.5
  • 38
    • 0035937172 scopus 로고    scopus 로고
    • Crystal structure of the iron-dependent regulator from Mycobacterium tuberculosis at 2.0-A resolution reveals the Src homology domain 3-like fold and metal binding function of the third domain
    • Feese MD, Ingason BP, Goranson-Siekierke J, Holmes RK, Hol WG: Crystal structure of the iron-dependent regulator from Mycobacterium tuberculosis at 2.0-A resolution reveals the Src homology domain 3-like fold and metal binding function of the third domain. J Biol Chem 2001;276:5959-5966.
    • (2001) J Biol Chem , vol.276 , pp. 5959-5966
    • Feese, M.D.1    Ingason, B.P.2    Goranson-Siekierke, J.3    Holmes, R.K.4    Hol, W.G.5
  • 42
    • 0036285253 scopus 로고    scopus 로고
    • Hypoxic response of Mycobacterium tuberculosis studied by metabolic labeling and proteome analysis of cellular and extracellular proteins
    • Rosenkrands I, Slayden RA, Crawford J, Aagaard C, Barry CE 3rd, Andersen P: Hypoxic response of Mycobacterium tuberculosis studied by metabolic labeling and proteome analysis of cellular and extracellular proteins. J Bacteriol 2002;184:3485-3491.
    • (2002) J Bacteriol , vol.184 , pp. 3485-3491
    • Rosenkrands, I.1    Slayden, R.A.2    Crawford, J.3    Aagaard, C.4    Barry III, C.E.5    Andersen, P.6
  • 43
    • 0036019356 scopus 로고    scopus 로고
    • Proteomics analysis of carbon-starved Mycobacterium smegmatis: Induction of Dps-like protein
    • Gupta S, Pandit SB, Srinivasan N, Chatterji D: Proteomics analysis of carbon-starved Mycobacterium smegmatis: Induction of Dps-like protein. Protein Eng 2002;15:503-512.
    • (2002) Protein Eng , vol.15 , pp. 503-512
    • Gupta, S.1    Pandit, S.B.2    Srinivasan, N.3    Chatterji, D.4
  • 44
    • 0034868629 scopus 로고    scopus 로고
    • Proteomics reveals open reading frames in Mycobacterium tuberculosis H37Rv not predicted by genomics
    • Jungblut PR, Muller EC, Mattow J, Kaufmann SH: Proteomics reveals open reading frames in Mycobacterium tuberculosis H37Rv not predicted by genomics. Infect Immun 2001;69:5905-5907.
    • (2001) Infect Immun , vol.69 , pp. 5905-5907
    • Jungblut, P.R.1    Muller, E.C.2    Mattow, J.3    Kaufmann, S.H.4
  • 45
    • 0035319968 scopus 로고    scopus 로고
    • The application of proteomics in defining the T cell antigens of Mycobacterium tuberculosis
    • Covert BA, Spencer JS, Orme IM, Belisle JT: The application of proteomics in defining the T cell antigens of Mycobacterium tuberculosis. Proteomics 2001;1:574-586.
    • (2001) Proteomics , vol.1 , pp. 574-586
    • Covert, B.A.1    Spencer, J.S.2    Orme, I.M.3    Belisle, J.T.4
  • 46
    • 0036327988 scopus 로고    scopus 로고
    • Clustering of proximal sequence space for the identification of protein families
    • Abascal F, Valencia A: Clustering of proximal sequence space for the identification of protein families. Bioinformatics 2002;18:908-921.
    • (2002) Bioinformatics , vol.18 , pp. 908-921
    • Abascal, F.1    Valencia, A.2
  • 48
    • 0036942898 scopus 로고    scopus 로고
    • Recent advances in the molecular diagnosis of tuberculosis
    • Su WJ: Recent advances in the molecular diagnosis of tuberculosis. J Microbiol Immunol Infect 2002;35:209-214.
    • (2002) J Microbiol Immunol Infect , vol.35 , pp. 209-214
    • Su, W.J.1
  • 49
    • 0034465661 scopus 로고    scopus 로고
    • Immunologic diagnosis of tuberculosis
    • Gennaro ML: Immunologic diagnosis of tuberculosis. Clin Infect Dis 2000;30(suppl 3):S243-246.
    • (2000) Clin Infect Dis , vol.30 , Issue.3 SUPPL.
    • Gennaro, M.L.1
  • 50
    • 0034610299 scopus 로고    scopus 로고
    • Recombinant bacillus Calmette-Guérin (BCG) vaccines expressing the Mycobacterium tuberculosis 30-kDa major secretory protein induce greater protective immunity against tuberculosis than conventional BCG vaccines in a highly susceptible animal model
    • Horwitz MA, Harth G, Dillon BJ, Maslesa-Galic' S: Recombinant bacillus Calmette-Guérin (BCG) vaccines expressing the Mycobacterium tuberculosis 30-kDa major secretory protein induce greater protective immunity against tuberculosis than conventional BCG vaccines in a highly susceptible animal model. Proc Natl Acad Sci USA 2000;97:13853-13858.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 13853-13858
    • Horwitz, M.A.1    Harth, G.2    Dillon, B.J.3    Maslesa-Galic', S.4
  • 51
    • 0037378874 scopus 로고    scopus 로고
    • A new vaccine against tuberculosis affords greater survival after challenge than the current vaccine in the guinea pig model of pulmonary tuberculosis
    • Horwitz MA, Harth G: A new vaccine against tuberculosis affords greater survival after challenge than the current vaccine in the guinea pig model of pulmonary tuberculosis. Infect Immun 2003;71:1672-1679.
    • (2003) Infect Immun , vol.71 , pp. 1672-1679
    • Horwitz, M.A.1    Harth, G.2
  • 52
    • 0037378836 scopus 로고    scopus 로고
    • Virulence, immunogenicity, and protective efficacy of two recombinant Mycobacterium bovis bacillus Calmette-Guérin strains expressing the antigen ESAT-6 from Mycobacterium tuberculosis
    • Bao L, Chen W, Zhang H, Wang X: Virulence, immunogenicity, and protective efficacy of two recombinant Mycobacterium bovis bacillus Calmette-Guérin strains expressing the antigen ESAT-6 from Mycobacterium tuberculosis. Infect Immun 2003;71:1656-1661.
    • (2003) Infect Immun , vol.71 , pp. 1656-1661
    • Bao, L.1    Chen, W.2    Zhang, H.3    Wang, X.4
  • 57
    • 1842451933 scopus 로고    scopus 로고
    • Mycobacterium tuberculosis isolate with a distinct genomic identity overexpresses a TAP like efflux pump
    • in press
    • Siddiqi N, Das R, Pathak N, Banerjee S, Ahmed N, Katoch VM, Hasnain SE: Mycobacterium tuberculosis isolate with a distinct genomic identity overexpresses a TAP like efflux pump. Infection 2004; in press.
    • (2004) Infection
    • Siddiqi, N.1    Das, R.2    Pathak, N.3    Banerjee, S.4    Ahmed, N.5    Katoch, V.M.6    Hasnain, S.E.7
  • 58
    • 0032728399 scopus 로고    scopus 로고
    • Searching for drug targets in microbial genomes
    • Galperin MY, Koonin E: Searching for drug targets in microbial genomes. Curr Opin Biotechnol 1999;10:571-578.
    • (1999) Curr Opin Biotechnol , vol.10 , pp. 571-578
    • Galperin, M.Y.1    Koonin, E.2
  • 59
    • 0038784717 scopus 로고    scopus 로고
    • Mycobacterium tuberculosis pathogenesis and molecular determinants of virulence
    • Smith I: Mycobacterium tuberculosis pathogenesis and molecular determinants of virulence. Clin Microbiol Rev 2003;16:463-496.
    • (2003) Clin Microbiol Rev , vol.16 , pp. 463-496
    • Smith, I.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.