Distinctiveness of Mycobacterium tuberculosis genotypes from human immunodeficiency virus type 1-seropositive and -seronegative patients in Lima, Peru

Journal of Clinical Microbiology

Volumn 41, Issue 4, 2003, Pages 1712-1716

  Ahmed, Niyaz ^a   Caviedes, Luz ^d   Alam, Mahfooz ^a   Rao, K Rajender ^a   Sangal, Vartul ^a   Sheen, Patricia ^d   Gilman, Robert H ^d,e,f   Hasnain, Seyed E ^a,b,c  

^a CENTRE FOR DNA FINGERPRINTING AND DIAGNOSTICS   (India)

^b NATIONAL INSTITUTE OF IMMUNOLOGY   (India)

^c JAWAHARLAL NEHRU CENTRE FOR ADVANCED SCIENTIFIC RESEARCH   (India)

^d UNIVERSIDAD PERUANA CAYETANO HEREDIA   (Peru)

^e ASOCIACIÓN BENÉFICA PRISMA   (Peru)

^f JOHNS HOPKINS BLOOMBERG SCHOOL OF PUBLIC HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; CLONAL VARIATION; CONTROLLED STUDY; DNA FINGERPRINTING; GENOTYPE; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN IMMUNODEFICIENCY VIRUS INFECTION; IMMUNITY; MAJOR CLINICAL STUDY; MICROBIAL DIVERSITY; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; PERU; PHYLOGENETIC TREE; PRIORITY JOURNAL; SEROLOGY; STRAIN DIFFERENCE;

AIDS-RELATED OPPORTUNISTIC INFECTIONS; DNA FINGERPRINTING; GENOTYPE; HIV SERONEGATIVITY; HIV SEROPOSITIVITY; HUMANS; MYCOBACTERIUM TUBERCULOSIS; PERU; PHYLOGENY; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; TUBERCULOSIS, PULMONARY;

BACTERIA (MICROORGANISMS); HUMAN IMMUNODEFICIENCY VIRUS; HUMAN IMMUNODEFICIENCY VIRUS 1; MYCOBACTERIUM; MYCOBACTERIUM TUBERCULOSIS; POSIBACTERIA; RNA VIRUSES;

EID: 12444298940     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.41.4.1712-1716.2003     Document Type: Article

References (22)

1. Ahmed, N., A. Bal, A. A. Khan, M. Alam, A. Kagal, V. Arjunwadkar, A. Rajput, A. A. Majeed, S. A. Rahman, S. Banerjee, S. Joshi, and R. Bharadwaj. 2002. Whole-genome fingerprinting and genotyping of multiple drug resistant (MDR) isolates of Pseudomonas aeruginosa from endophthalmitis patients in India. Infect. Genet. Evol. 1:237-242.
2. Ahmed, N., M. Alam, A. A. Majeed, S. A. Rahman, A. Cataldi, D. Cousins, and S. E. Hasnain. 2002. Genome sequence based, comparative analysis of the fluorescent amplified fragment length polymorphisms (FAFLP) of tubercle bacilli from seals provides molecular evidence for a new species within the Mycobacterium tuberculosis complex. Infect. Genet. Evol. 2:193-199.
3. Anh, D. D., M. W. Borgdorff, L. N. Van, N. T. N. Lan, T. van Gorkom, K. Kremer, and D. van Soolingen. 2000. Mycobacterium tuberculosis Beijing genotype emerging in Vietnam. Emerg. Infect. Dis. 6:302-305.
4. Behr, M. A., M. A. Wilson, W. P. Gill, H. Salamon, G. K. Schoolnik, S. Rane, and P. M. Small. 1999. Comparative genomics of BCG vaccines by wholegenome DNA microarray. Science 284:1520-1523.
5. Bifani, P. J., B. B. Plikakytis, and V. Kapur. 1996. Origin and interstate spread of a New York City multidrug-resistant Mycobacterium tuberculosis clone family. JAMA 275:452-455.
6. Brosch, R., S. V. Gordon, A. Pym, K. Eiglmeier, T. Garnier, and S. T. Cole. 2000. Comparative genomics of the mycobacteria. Int. J. Med. Microbiol. 290:143-152.
7. Brosch, R., S. V. Gordon, M. Marmiesse, P. Brodin, C. Buchrieser, K. Eiglmeier, T. Garnier, C. Gutierrez, G. Hewinson, K. Kremer, L. M. Parsons, A. S. Pym, S. Samper, D. van Soolingen, and S. T. Cole. 2002. A new evolutionary scenario for the Mycobacterium tuberculosis complex. Proc. Natl. Acad. Sci. USA 99:3684-3689.
8. Caviedes, L., T. Lee, R. H. Gilman, P. Sheen, E. Spellman, E. H. Lee, D. E. Berg, S. Montenegro-James, and The Tuberculosis Working Group in Peru. 2000. Rapid, efficient detection and drug susceptibility testing of Mycobacterium tuberculosis in sputum by microscopic observation of broth cultures. J. Clin. Microbiol. 38:1203-1208.
9. Cole, S. T., R. Brosch, J. Parkhill, T. Garnier, C. Churcher, D. Harris, S. V. Gordon, K. Eiglmeier, et al. 1998. Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence. Nature 39:3537-3544.
10. Daley, C. L., P. M. Small, G. F. Schecter, G. K. Schoolnik, R. A. McAdam, W. R. Jacobs, Jr., and P. C. Hopewell. 1992. An outbreak of tuberculosis with the human immunodeficiency virus: an analysis using restriction fragment length polymorphisms. N. Engl. J. Med. 326:231-235.
11. Edlin, B. R., J. I. Tokars, M. H. Grieco, J. T. Crawford, J. Williams, E. M. Sordillo, K. R. Ong, J. O. Kilburn, S. W. Dooley, K. G. Castro, W. R. Jarvis, and S. D. Holmberg. 1992. An outbreak of multidrug-resistant tuberculosis among hospitalized patients with the acquired immunodeficiency syndrome. N. Engl. J. Med. 326:1514-1521.
12. Gordon, S. V., R. Brosch, A. Billault, T. Garnier, K. Eiglmeier, and S. T. Cole. 1999. Identification of variable regions in the genomes of tubercle bacilli using bacterial artificial chromosome arrays. Mol. Microbiol. 32:643-655.
13. Goulding, J. N., J. Stanley, N. Saunders, and C. Arnold. 2000. Genome-sequence-based fluorescent amplified-fragment length polymorphism analysis of Mycobacterium tuberculosis. J. Clin. Microbiol. 38:1121-1126.
14. Janssen, P., R. Coopman, G. Huys, J. Swings, M. Bleeker, P. Vos, M. Zabeau, and K. Kersters. 1996. Evaluation of DNA fingerprinting method AFLP as a new tool in bacterial taxonomy. Microbiology 142:1881-1893.
15. Kato-Maeda, M., P. J. Bifani, B. N. Kreiswirth, and P. M. Small. 2001. The nature and consequence of genetic variability in Mycobacterium tuberculosis. J. Clin. Investig. 107:533-537.
16. Kato-Maeda, M., J. T. Rhee, T. R. Gingeras, H. Salamon, J. Drenkow, N. Smittipat, and P. M. Small. 2001. Comparing genomes within the species Mycobacterium tuberculosis. Genome Res. 11:547-554.
17. Siddiqi, N., M. Shamim, A. Amin, D. S. Chauhan, R. Das, K. Srivastava, D. Singh, V. D. Sharma, V. M. Katoch, S. K. Sharma, M. Hanief, and S. E. Hasnain. 2001. Typing of drug resistant isolates of Mycobacterium tuberculosis from India using the IS6110 element reveals substantive polymorphism. Infect. Genet. Evol. 1:109-113.
18. Siddiqi, N., M. Shamim, S. Hassain, R. K. Choudhary, N. Ahmed, Prachee, S. Banerjee, G. R. Savithri, M. Alam, N. Pathak, A. Amin, M. Hanief, V. M. Katoch, S. K. Sharma, and S. E. Hasnain. 2002. Molecular characterization of multidrug-resistant isolates of Mycobacterium tuberculosis from patients in north India. Antimicrob. Agents Chemother. 46:443-450.
19. Small, P. M., R. W. Shafer, P. C. Hopewell, S. P. Singh, M. J. Murphy, E. Desmond, M. F. Sierra, and G. K. Schoolnik. 1993. Exogenous reinfection with multidrug-resistant M. tuberculosis in patients with advanced HIV infection. N. Engl. J. Med. 328:1137-1144.
20. van Soolingen, D. L. Qian, P. E. de Haas, J. T. Douglas, H. Traore, F. Portaels, H. Z. Qing, D. Enkhsaikan, P. Nymadawa, and J. D. van Embden. 1995. Predominance of a single genotype of Mycobacterium tuberculosis in countries of East Asia. J. Clin. Microbiol. 33:3234-3238.
21. Yang, Z. H., I. Mtoni, M. Chonde, M. Mwasekaga, K. Fuursted, D. S. Askgard, J. Bennedsen, P. E. W. de Haas, D. van Soolingen, J. D. A. van Embden, and A. B. Andersen. 1995. DNA fingerprinting and phenotyping of Mycobacterium tuberculosis isolates from human immunodeficiency virus (HIV)-seropositive and HIV-seronegative patients in Tanzania. J. Clin. Microbiol. 33:1064-1069.
22. Yeh, R. W., P. De Leon, C. B. Agasino, J. A. Hahn, C. L. Daley, P. C. Hopewell, and P. M. Small. 1998. Stability of Mycobacterium tuberculosis DNA genotypes. J. Infect. Dis. 177:1107-1111.