Genetic analysis of RSC58, which encodes a component of a yeast chromatin remodeling complex, and interacts with the transcription factor Swi6

Molecular Genetics and Genomics

Volumn 271, Issue 4, 2004, Pages 479-489

  Taneda, T ^a   Kikuchi, A ^a  

^a NAGOYA UNIVERSITY GRADUATE SCHOOL OF MEDICINE   (Japan)

Author keywords

RSC complex; RSC58; Saccharomyces cerevisiae; SWI6

Indexed keywords

ALLELE; ARTICLE; CARBOXY TERMINAL SEQUENCE; CELL FUNCTION; CHROMATIN; CONTROLLED STUDY; GENE FUNCTION; GENE INTERACTION; GENE MUTATION; GENETIC ANALYSIS; GENETIC CODE; GENETIC TRANSCRIPTION; HYBRIDIZATION; MOLECULAR MODEL; NONHUMAN; NUCLEOSOME; PHENOTYPE; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE; TEMPERATURE MEASUREMENT; YEAST;

AMINO ACID SEQUENCE; BASE SEQUENCE; CHROMATIN; DNA-BINDING PROTEINS; FRAMESHIFT MUTATION; MOLECULAR SEQUENCE DATA; PHENOTYPE; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SEQUENCE DELETION; SUPPRESSION, GENETIC; TEMPERATURE; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

SACCHAROMYCES; SACCHAROMYCES CEREVISIAE;

EID: 3042626089     PISSN: 16174615     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00438-004-0999-3     Document Type: Article

References (42)

1. Andrews BJ, Moore LA (1992) Interaction of the yeast Swi4 and Swi6 cell cycle regulatory proteins in vitro. Proc Natl Acad Sci USA 89:11852-11856
2. Angus-Hill ML, Schlichter A, Roberts D, Erdjument-Bromage H, Tempst P, Cairns BR (2001) A Rsc3/Rsc30 zinc cluster dimer reveals novel roles for the chromatin remodeler RSC in gene expression and cell cycle control. Mol Cell 7:741-751
3. Burke D, Dawson D, Stearns T (2000) Methods in yeast genetics: a laboratory course manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
4. Cairns BR., Lorch Y, Li Y, Zhang M, Lacomis L, Erdjument-Bromage H, Tempst P, Du J, Laurent B, Kornberg RD (1996) RSC, an essential, abundant chromatin-remodeling complex. Cell 87:1249-1260
5. Cairns BR, Erdjument-Bromage H, Tempst P, Winston F, Kornberg RD (1998) Two actin-related proteins are shared functional components of the chromatin-remodeling complexes RSC and SWI/SNF. Mol Cell 2:639-651
6. Cao Y, Cairns BR, Kornberg RD, Laurent BC (1997) Sfh1p, a component of a novel chromatin-remodeling complex, is required for cell cycle progression. Mol Cell Biol 17:3323-3334
7. Chai B, Hsu J, Du J, Laurent BC (2002) Yeast RSC function is required for organization of the cellular cytoskeleton via an alternative PKC1 pathway. Genetics 161:575-584
8. Cosma MP, Tanaka T, Nasmyth K (1999) Ordered recruitment of transcription and chromatin remodeling factors to a cell cycle-and developmentally regulated promoter. Cell 97:299-311
9. Cosma MP, Panizza S, Nsamyth K (2001) Cdk1 triggers association of RNA polymerase to cell cycle promoters only after recruitment of the Mediator by SBF. Mol Cell 7:1213-1220
10. Damelin M, Simon I, Moy TI, Wilson B, Komili S, Tempst P, Roth FP, Young RA, Cairns BR, Silver PA (2002) The genome-wide localization of Rsc9, a component of the RSC chromatin-remodeling complex, changes in response to stress. Mol Cell 9:563-573
11. Du J, Nasir I, Benton BK, Kladde MP, Laurent BC (1998) Sth1p, a Saccharomyces cerevisiae Snf2p/Swi2p homolog, is an essential ATPase in RSC and differs from Snf/Swi in its interactions with histones and chromatin-associated proteins. Genetics 150:987-1005
12. Graham TR, Emr SD (1991) Compartmental organization of Golgi-specific protein modification and vacuolar protein sorting events defined in a yeast sec18 (NSF) mutant. J Cell Biol 114:207-218
13. Hsieh Y, Kundu TK, Wang Z, Kovelman R, Roeder RG (1999) The TFIIIC90 subunit of TFIIIC interacts with multiple components of the RNA polymerase III machinery and contains a histone-specific acetyltransferase activity. Mol Cell Biol 19:7697-7704
14. Hoffman GA, Garrison TR, Dohlman HG (2002) Analysis of RGS proteins in Saccharomyces cerevisiae. Methods Enzymol 344:617-631
15. Ito T (2003) Nucleosome assembly and remodeling. Curr Top Microbiol Immunol 274:1-22
16. James P, Halladay J, Craig EA (1996) Genomic libraries and a host strain designed for highly efficient two-hybrid selection in yeast. Genetics 144:1425-1436
17. Kingston RE, Narlinkar GJ (1999) ATP-dependent remodeling and acetylation as regulators of chromatin fluidity. Genes Dev 13:2339-2352
18. Koch C, Nasmyth K (1994) Cell cycle regulated transcription in yeast. Curr Opin Cell Biol 6:451-459
19. Koch C, Moll T, Neuberg M, Ahorn H, Nasmyth K (1993) A role for the transcription factors Mbp1 and Swi4 in progression from G1 to S phase. Science 261:1551-1557
20. Koyama H, Itoh M, Myahara K, Tsuchiya E (2002) Abundance of the RSC nucleosome-remodeling complex is important for the cells to tolerate DNA damage in Saccharomyces cerevisiae. FEBS Lett 531:215-221
21. Laurent BC, Yang X, Carlson M (1992) An essential Saccharomyces cerevisiae gene homologous to SNF2 encodes a helicase-related protein in a new family. Mol Cell Biol 12:1893-1902
22. Macpherson N, Measday V, Moore L, Andrews B (2000) A yeast taf17 mutant requires the Swi6 transcriptional activator for viability and shows defects in cell cycle-regulated transcription. Genetics 154:1561-1576
23. Morera JM, Holmberg S (1999) Transcriptional repression of the yeast CHA1 gene requires the chromatin-remodeling complex RSC. EMBO J 18:2836-2844
24. Ng HH, Robert F, Young RA, Struhl K (2002) Genome-wide location and regulated recruitment of the RSC nucleosome-remodeling complex. Genes Dev 16:806-819
25. Ohkuni K, Okuda A, Kikuchi A (2003) Yeast Nap1-binding protein Nbp1 is required for mitotic growth at high temperatures and for cell wall integrity. Genetics 165:517-529
26. Peterson CL, Workman JL (2000) Promoter targeting and chromatin remodeling by the SWI/SNF complex. Curr Opin Genet Dev 10:187-92
27. Peterson CL, Zhao Y, Chait BT (1998) Subunits of the yeast SWI/SNF complex are members of the actin-related protein (ARP) family. J Biol Chem 273:23641-23644
28. Sanders SL, Jennings J, Canutescu A, Lind AJ, Weil PA (2002) Proteomics of the eukaryotic transcription machinery: identification of proteins associated with components of yeast TFIID by multidimensional mass spectrometry. Mol Cell Biol 22:4723-4738
29. Sayre MH, Tschochner H, Kornberg RD (1992) Reconstitution of transcription with five purified initiation factors and RNA polymerase II from Saccharomyces cerevisiae. J Biol Chem 267:23376-23382
30. Sengupta SM, VanKanegan M, Persinger J, Logie C, Cairns BR, Peterson CL, Bartholomew B (2001) The interactions of yeast SWI/SNF and RSC with the nucleosome before and after chromatin remodeling. J Biol Chem 276:12636-12644
31. Sudarsanam P, Iyer VR, Brown PO, Winston F (2000) Whole-genome expression analysis of snf/swi mutants of Saccharomyces cerevisiae. Proc Natl Acad Sci USA 28:3364-3369
32. Sutton A, Immanuel D, Arndt KT (1991) The SIT4 protein phosphatase functions in late G1 for progression into S phase. Mol Cell Biol 11:2133-2148
33. Szerlong H, Saha A, Cairns BR (2003) The nuclear actin-related proteins Arp7 and Arp9: a dimeric module that cooperates with architectural proteins for chromatin remodeling. EMBO J 22:3175-3187
34. Treich I, Ho L, Carlson M (1998) Direct interaction between Rsc6 and Rsc8/Swh3, two proteins that are conserved in SWI/SNF-related complexes. Nucleic Acids Res 26:3739-3745
35. Tsuchiya E, Uno M, Kiguchi A, Masuoka K, Kanemori Y, Okabe S, Miyakawa T (1992) The Saccharomyces cerevisiae NPSI gene, a novel CDC gene which encodes a 160-kDa nuclear protein involved in G2 phase control. EMBO J 11:4017-4026
36. Vignali M, Hassan AH, Neely KE, Workman JL (2000) ATP-dependent chromatin-remodeling complexes. Mol Cell Biol 20:1899-1910
37. Wach A, Brachat A, Aoberti-Segui C, Rebischung C, Philippsen P (1997) Heterologous HIS3 marker and GFP reporter modules for PCR-targeting in Saccharomyces cerevisiae. Yeast 13:1065-1075
38. Wang W (2003) The SWI/SNF family of ATP-dependent chromatin remodelers: similar mechanisms for diverse functions. Curr Top Microbiol Immunol 274:143-69
39. Xue Y, Canman JC, Lee CS, Nie Z, Yang D, Moreno GT, Young MK, Salmon ED, Wang W (2000) The human SWI/SNF-B chromatin-remodeling complex is related to yeast RSC and localizes at kinetochores of mitotic chromosomes. Proc Natl Acad Sci USA 97:13015-13020
40. Yukawa M, Katoh S, Miyakawa T, Tsuchiya E (1999) Nps1/Sth1p, a component of an essential chromatin-remodeling complex of Saccharomyces cerevisiae, is required for the maximal expression of early meiotic genes. Genes Cells 4:99-110
41. Yukawa M, Koyama H, Miyahara K, Tsuchiya E (2002) Functional differences between RSC1 and RSC2, components of a for growth essential chromatin-remodeling complex of Saccharomyces cerevisiae, during the sporulation process. FEMS Yeast Res 2:87-91
42. Zeng L, Zhou M (2002) Bromodomain: an acetyl-lysine binding domain. FEBS Lett 513:124-128