Phylogenetic relationships within the 'core' Laureae (Litsea complex, Lauraceae) inferred from sequences of the chloroplast gene matK and nuclear ribosomal DNA ITS regions

Plant Systematics and Evolution

Volumn 246, Issue 1-2, 2004, Pages 19-34

  Li, Jie ^a   Christophel, D C ^b   Conran, J G ^c   Li, Hsi Wen ^a  

^a CHINESE ACADEMY OF SCIENCES   (China)

^b UNIVERSITY OF DENVER   (United States)

^c UNIVERSITY OF ADELAIDE   (Australia)

Author keywords

Classification; ITS; Lauraceae; Laureae; Lindera; Litsea; matK; Molecular phylogeny

Indexed keywords

ACTINODAPHNE; ITEADAPHNE; LAURACEAE; LAURUS; LINDERA; LITSEA; MAGNOLIOPHYTA; NEOLITSEA; PARASASSAFRAS; SASSAFRAS; SINOSASSAFRAS; UMBELLULARIA;

EID: 3042562256     PISSN: 03782697     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00606-003-0113-z     Document Type: Article

References (57)

1. Baldwin B. G., Sanderson M. J., Porter J. M., Wojciechowski M. F., Campbell C. S., Donoghue M. J., Soltis P. S., Kuzoff R. K., Ko S. C., O'Kane S. L., Jr., Schaal B. A., Liu Z. L., Sinclair J. B., Fangan B. M., Stedje B., Stabbetorp O. E., Jensen E. S., Jakobsen K. S., Mes T. H. M., t'Hart H. T. (1995) The ITS region of nuclear ribosomal DNA: A valuable source of evidence on angiosperm phylogeny. Ann. Missouri Bot. Gard. 82: 247-277.
2. Barker N. P., Linder H. P., Morton C. M., Lyle M. (2003) The paraphyly of Cortaderia (Danthonioideae; Poaceae): evidence from morphology and chloroplast and nuclear DNA sequence data. Ann. Missouri Bot. Gard. 90: 1-24.
3. Barlow B. A. (1981) The Australian Flora: Its origin and evolution. In: George A. S. (ed.) Flora of Australia Vol. 1. Australian Government Publishing Service, Canberra, pp. 25-73.
4. Bentham G. (1880) Laurineae. In: Bentham G., Hooker J. D. (eds.) Genera Plantarum, Vol. 3. London, L. Reeve, pp. 146-168.
5. Blattner F. R. (1999) Direct amplification of the entire ITS region from poorly preserved plant material using recombinant PCR. Biotechniques 27: 1180-1186.
6. Chanderbali A. S., van der Werff H., Renner S. S. (2001) Phylogeny and historical biogeography of Lauraceae: evidence from the chloroplast and nuclear genomes. Ann. Missouri Bot. Gard. 88: 104-134.
7. Chase M. W., Cox A. V., Soltis D. E., Soltis P. S., Moil M. E., Savolainen V., Reeves G., Hoot S. B., Morton C. M. (1997) Large DNA sequence matrices, phylogenetic signal and feasibility: an empirical approach. Amer. J. Bot., Suppl. 84: 181.
8. Christophel D. C. (1994) The early Tertiary macrofloras of continental Australia. In: Hill R. S. (ed.) History of the Australian Vegetation: Cretaceous to Recent. Cambridge University Press, Cambridge, pp. 262-275.
9. Davis J. I., Simmons M. P., Stevenson D. W., Wendel J. F. (1998) Data decisiveness, data quality, and incongruence in phylogenetic analysis - an example from the monocotyledons using mitochondrial atpA. sequences. Syst. Biol. 47: 282-310.
10. De Queiroz A., Donoghue M. J., Kim J. (1995) Separate versus combined analysis of phylogenetic evidence. Ann. Rev. Ecol. Syst. 26: 657-681.
11. Denda T., Watanabe K., Koosuge K., Yahara T., Ito M. (1999) Molecular phylogeny of Brachycome (Asteraceae). Plant Syst. Evol. 217: 299-311.
12. Donoghue M. J., Sanderson M. J. (1992) The suitability of molecular and morphological evidence in reconstructing plant phylogeny. In: Soltis P. S., Soltis D. E., Doyle J. J. (eds.) Molecular systematics of plants. Chapman and Hall, New York, pp. 340-368.
13. Doyle J. J., Doyle J. S. (1987) A rapid DNA isolation procedure for small qualities of fresh leaf tissue. Phytochemical Bull. 19: 11-15.
14. Eldenäs P., Linder H. P. (2000) Congruence and complimentarity of morphological and trnL-F sequence, and the phylogeny of the African Restionaceae. Syst. Bot. 25: 692-707.
15. Farris J. S. (1989) A successive approximations approach to character weighting. Syst. Zool. 18: 374-385.
16. Felsenstein J. (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
17. Gadek P. A., Wilson P. G., Quinn C. J. (1996) Phylogenetic reconstruction in Myrtaceae using matK, with particular reference to the position of Psiloxylon and Heteropyxis. Austral. Syst. Bot. 9: 283-290.
18. Harley E. H. (1995) DAPSA: DNA and Protein Sequence Analysis, Version 3.8. University of Cape Town, Cape Town.
19. Hooker J. D. (1890) The Flora of British India, Vol. 5. L. Reeve, London.
20. Huelsenbeck J. P., Bull J. J., Cunningham C. W. (1996) Combining data in phylogenetic analysis. TREE 11: 152-158.
21. Hutchinson J. (1964) The genera of flowering plants, vol. 1. Clarendon Press, Oxford.
22. Hyland B. P. M. (1989) A revision of Lauraceae in Australia (excluding Cassytha). Austral. Syst. Bot. 2: 135-367.
23. Johnson L. A., Schultz J. L., Soltis D. E., Soltis P. S. (1996) Monophyly and generic relationships of Polemoniaceae based on matK sequences. Amer. J. Bot. 83: 1207-1224.
24. Johnson L. A., Soltis D. E. (1994) matK DNA sequences and phylogenetic reconstruction in Saxifragaceae s.str. Syst. Bot. 19: 143-156.
25. Johnson L. A., Soltis D. E. (1995) phylogenetic inference in Saxifragaceae sensu stricto and Gilia (Polemoniaceae) using matK sequences. Ann. Missouri Bot. Gard. 82: 149-175.
26. Judd W. S., Campbell C. S., Kellogg E. A., Stevens P. F. (1999) Plant systematics: a phylogenetic approach. Sinauer, Sunderland Mass.
27. Kostermans A. J. G. H. (1957) Lauraceae. Pengumuman Balai Besar Penjelidikan Kehutanan Indonesia 57: 1-64.
28. Kron A. K. (1997) Phylogenetic relationships of Rhododendroideae (Ericaceae). Amer. J. Bot. 84: 973-980.
29. Li H.-W. (1985) Parallel evolution in Litsea and Lindera of Lauraceae. Acta Bot. Yunnan. 7: 129-135.
30. Li H.-W. (1995) The origin and evolution of Litsea genera group (Laureae) in Lauraceae. Acta Bot. Yunnan. 17: 251-254.
31. Li H.-W., Pai P. Y., Lee S. K., Wei F. N., Wei Y. T., Yang Y. C., Huang P. H., Tsui H. P., Shia Z. D., Li J. L. (1984) Lauraceae. In: Li H.-W. (ed.) Flora of Reipublicae Popularis Sinicae, Vol. 31. Science Press, Beijing.
32. Li J. (2001) Systematic relationships Within the Litsea complex (Lauraceae). Ph.D. The University of Adelaide (unpublished).
33. Li J., Christophel D. C. (2000) Systematic relationships within the Litsea complex (Lauraceae): a cladisitic analysis based on morphological and leaf cuticle data. Austral. Syst. Bot. 13: 1-13.
34. Liang H. P., Hilu K. W. (1996) Application of the matK gene sequences to grass systematics. Canad. J. Bot. 74: 125-134.
35. Long D. G. (1984) Notes relating to the Flora of Bhutan: VIII. Notes Roy. Bot. Gard., Edinburgh 41: 505-525.
36. Manos P. S., Steele K. P. (1997) Phylogenetic analyses of "higher" Hamamelididae based on plastid sequence data. Amer. J. Bot. 84: 1407-1419.
37. Mason-Gamer R. J., Kellogg E. A. (1996) Testing for phylogenetic conflict among molecular data sets in the tribe Triticeae (Gramineae). Syst. Biol. 45: 524-545.
38. Meissner C. (1864) Lauraceae. In: de Candolle A. P. (ed.) Prodromus Systematis Naturalis Regni Vegetablis, Vol. XV. Masson et Fils, Paris, pp. 1-260.
39. Nees von Esenbeck C. G. D. (1836) Systema Laurinarum. Sumptibus Veitii et Sociorum, Berlin.
40. Nixon K. C., Carpenter J. M. (1996) On simultaneous analysis. Cladistics 12: 221-241.
41. Olmstead R. G., Palmer J. D. (1994) Chloroplast DNA systematics: a review of methods and data analysis. Amer. J. Bot. 81: 1205-1224.
42. Pax F. (1889) Lauraceae. In: Engler A., Prantl K. (eds.) Die natürlichen Pflanzenfamilien Bd. III, 2. Engelmann, Leipzig, pp. 106-126.
43. Plunkett G. H., Soltis D. E., Soltis P. S. (1996) Evolution patterns in Apiaceae: inferences based on matK sequence data. Syst. Bot. 21: 477-495.
44. Plunkett G. H., Soltis D. E., Soltis P. S. (1997) Clarification of the relationship between Apiaceae and Araliaceae based on matK and rbcL sequence data. Amer. J. Bot. 84: 565-580.
45. Rehder A. (1920) The American and Asiatic species of Sassafras. J. Arnold Arbor. 1: 242-245.
46. Richter H. G. (1981) Anatomie des sekundären Xylems und der Rinde der Lauraceae. Sonderb. Naturwiss. Vereins Hamburg 5: 1-148.
47. Rohwer J. G. (1993) Lauraceae. In: Kubitzki K., Rohwer J. G., Bittrich V. (eds.) The families and genera of vascular plants, Vol. 2. Springer, Berlin, pp. 366-391.
48. Rohwer J. G. (2000) Toward a phylogenetic classification of the Lauraceae: evidence from matK sequences. Syst. Bot. 25: 60-71.
49. Rohwer J. G., Richter H. G., van der Werff H. (1991) Two new genera of Neotropical Lauraceae and critical remarks on their generic delimitation. Ann. Missouri Bot. Gard. 78: 388-400.
50. Steele K. P., Vilgalys R. (1994) Phylogenetic analysis of Polemoniaceae using nucleotide sequences of plastid gene matK. Syst. Bot. 19: 126-142.
51. Swofford D. L. (1998) PAUP* Phylogenetic Analysis Using Parsimony. Sinauer and Associates, Sunderland, Massachusetts.
52. Tsui H. P. (1987) A study on the system of Lindera. Acta Phytotax. Sinica 25: 161-171.
53. van der Werff H. (2001) An annotated key to the genera of Lauraceae in the Flora Malesiana region. Blumea 46: 125-140.
54. van der Werff H., Richter H. G. (1996) Toward an improved classification of Lauraceae. Ann. Missouri Bot. Gard. 83: 409-418.
55. Weberling F. (1985) Infloreszenzmorphologie der Lauraceae. Bot. Jahrb. Syst. 107: 395-414.
56. White T. J., Bruns T. D., Lee S. B., Taylor J. W. (1990) Amplification and direct sequencing of ribosomal RNA genes and the internal transcribed spacer in fungi. In: Innis M. A., Gelfand G. H., Sninsky J. J., White T. J. (eds.) PCR - Protocols and applications - a laboratory manual. Academic Press, Orlando Fl., pp. 315-322.
57. Xiang Q. Y., Soltis D. E., Soltis P. S. (1998) Phylogenetic relationships of the Cornaceae and close relatives inferred from matK and rbcL sequences. Amer. J. Bot. 85: 285-297.