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Volumn 61, Issue SUPPL. 7, 2005, Pages 67-83

Assessment of CASP6 predictions for new and nearly new fold targets

Author keywords

CASP6; New Fold prediction assessment; Protein structure prediction

Indexed keywords

PROTEIN;

EID: 30344487561     PISSN: 08873585     EISSN: None     Source Type: Journal    
DOI: 10.1002/prot.20722     Document Type: Conference Paper
Times cited : (50)

References (24)
  • 1
    • 30344482650 scopus 로고    scopus 로고
    • http://predictioncenter.org/casp6/.
  • 3
    • 0042622381 scopus 로고    scopus 로고
    • LGA: A method for finding 3D similarities in protein structures
    • Zemla A. LGA: A method for finding 3D similarities in protein structures. Nucleic Acids Res 2003;31:3370-3374.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3370-3374
    • Zemla, A.1
  • 4
    • 0242299187 scopus 로고    scopus 로고
    • Predictions without templates: New folds, secondary structure, and contacts in CASP5
    • Aloy P, Stark A, Hadley C, Russell R. Predictions without templates: new folds, secondary structure, and contacts in CASP5. Proteins 2003;Suppl 6:436-456.
    • (2003) Proteins , vol.6 , pp. 436-456
    • Aloy, P.1    Stark, A.2    Hadley, C.3    Russell, R.4
  • 8
    • 0033833116 scopus 로고    scopus 로고
    • Protein structure alignment using environmental profiles
    • Jung J, Lee B. Protein structure alignment using environmental profiles. Protein Eng 2000;13:535-543.
    • (2000) Protein Eng , vol.13 , pp. 535-543
    • Jung, J.1    Lee, B.2
  • 9
    • 0028961335 scopus 로고
    • SCOP: A structural classification of proteins database for the investigation of sequences and structures
    • Murzin AG, Brenner SE, Hubbard T, Chothia C. SCOP: a structural classification of proteins database for the investigation of sequences and structures. J Mol Biol 1995;247:536-540.
    • (1995) J Mol Biol , vol.247 , pp. 536-540
    • Murzin, A.G.1    Brenner, S.E.2    Hubbard, T.3    Chothia, C.4
  • 13
    • 30344464787 scopus 로고    scopus 로고
    • Selecting models with a meta-MQAP
    • Azaria Y. Selecting models with a meta-MQAP. CASP6 Meeting Abstracts 2004:97; http://predictioncenter.org/casp6/abstracts.
    • (2004) CASP6 Meeting Abstracts , pp. 97
    • Azaria, Y.1
  • 14
    • 0037305974 scopus 로고    scopus 로고
    • Overview of structural genomics: From structure to function
    • Zhang C, Kim SH. Overview of structural genomics: from structure to function. Curr Opin Chem Biol 2003;7:28-32.
    • (2003) Curr Opin Chem Biol , vol.7 , pp. 28-32
    • Zhang, C.1    Kim, S.H.2
  • 16
    • 30344435386 scopus 로고    scopus 로고
    • Generalized protein structure prediction based on combination of fold-recognition with de novo folding and evaluation of models
    • Koliński A, Bujnicki JM. Generalized protein structure prediction based on combination of fold-recognition with de novo folding and evaluation of models. CASP6 Meeting Abstracts 2004:88-89. http://predictioncenter.org/casp6/ abstracts.
    • (2004) CASP6 Meeting Abstracts , pp. 88-89
    • Koliński, A.1    Bujnicki, J.M.2
  • 17
    • 30344446456 scopus 로고    scopus 로고
    • Modeling of CASP6 target proteins with 3D-Jury, Meta-BASIC and ROSETTA
    • Ginalski K. Modeling of CASP6 target proteins with 3D-Jury, Meta-BASIC and ROSETTA. CASP6 Meeting Abstracts 2004:64. http://predictioncenter.org/casp6/ abstracts.
    • (2004) CASP6 Meeting Abstracts , pp. 64
    • Ginalski, K.1
  • 18
    • 30344447772 scopus 로고    scopus 로고
    • FRAGFOLD3, THREADER3 and DISOPRED2: Improved methods for prediction of protein folds, disorder and function
    • Sadowski MI, Watson JD, Sodhi JS, Ward JJ, Jones DT. FRAGFOLD3, THREADER3 and DISOPRED2: improved methods for prediction of protein folds, disorder and function. CASP6 Meeting Abstracts 2004:81-82. http://predictioncenter.org/casp6/ abstracts.
    • (2004) CASP6 Meeting Abstracts , pp. 81-82
    • Sadowski, M.I.1    Watson, J.D.2    Sodhi, J.S.3    Ward, J.J.4    Jones, D.T.5
  • 20
    • 0031298075 scopus 로고    scopus 로고
    • Successful ab initio prediction of the tertiary structure of NK-lysin using multiple sequences and recognized supersecondary structural motifs
    • Jones DT. Successful ab initio prediction of the tertiary structure of NK-lysin using multiple sequences and recognized supersecondary structural motifs. Proteins 1997;Suppl 1:185-191.
    • (1997) Proteins , Issue.SUPPL. 1 , pp. 185-191
    • Jones, D.T.1
  • 21
    • 0031585984 scopus 로고    scopus 로고
    • Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions
    • Simons KT, Kooperberg C, Huang E, Baker D. Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions. J Mol Biol 1997;268:209-225.
    • (1997) J Mol Biol , vol.268 , pp. 209-225
    • Simons, K.T.1    Kooperberg, C.2    Huang, E.3    Baker, D.4
  • 23
    • 0242362160 scopus 로고    scopus 로고
    • A "FRankenstein's monster" approach to comparative modeling: Merging the finest fragments of Fold-Recognition models and iterative model refinement aided by 3D structure evaluation
    • Kosinski J, Cymerman IA, Feder M, Kurowski MA, Sasin JM, Bujnicki JM. A "FRankenstein's monster" approach to comparative modeling: merging the finest fragments of Fold-Recognition models and iterative model refinement aided by 3D structure evaluation. Proteins 2003;Suppl 6:369-379.
    • (2003) Proteins , vol.6 , pp. 369-379
    • Kosinski, J.1    Cymerman, I.A.2    Feder, M.3    Kurowski, M.A.4    Sasin, J.M.5    Bujnicki, J.M.6
  • 24
    • 0242299155 scopus 로고    scopus 로고
    • CAFASP3: The third critical assessment of fully automated structure prediction methods
    • Fischer D, Rychlewski L, Dunbrack Jr. RL, Ortiz AR, Elofsson A. CAFASP3: the third critical assessment of fully automated structure prediction methods. Proteins 2003;Suppl 6:503-516.
    • (2003) Proteins , Issue.SUPPL. 6 , pp. 503-516
    • Fischer, D.1    Rychlewski, L.2    Dunbrack Jr., R.L.3    Ortiz, A.R.4    Elofsson, A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.