Evolutionary and functional relationships within the DJ1 superfamily

BMC Evolutionary Biology

Volumn 4, Issue , 2004, Pages

  Bandyopadhyay, Sourav ^a   Cookson, Mark R ^a  

^a NATIONAL INSTITUTE ON AGING   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA (MICROORGANISMS); EUKARYOTA;

AVIAN PROTEIN; CAENORHABDITIS ELEGANS PROTEIN; DROSOPHILA PROTEIN; FISH PROTEIN; ONCOPROTEIN; PARK7 PROTEIN, HUMAN; SIGNAL PEPTIDE; XENOPUS PROTEIN;

AMINO ACID SEQUENCE; ANIMAL; ATLANTIC SALMON; CHICKEN; CHLOROCEBUS AETHIOPS; GENETICS; HAMSTER; HUMAN; MESOCRICETUS; MOLECULAR EVOLUTION; MOLECULAR GENETICS; MOUSE; MULTIGENE FAMILY; NUCLEOTIDE SEQUENCE; PHYLOGENY; PHYSIOLOGY; RAT; SEQUENCE HOMOLOGY;

AMINO ACID SEQUENCE; ANIMALS; AVIAN PROTEINS; CAENORHABDITIS ELEGANS PROTEINS; CERCOPITHECUS AETHIOPS; CHICKENS; CONSERVED SEQUENCE; CRICETINAE; DROSOPHILA PROTEINS; EVOLUTION, MOLECULAR; FISH PROTEINS; HUMANS; INTRACELLULAR SIGNALING PEPTIDES AND PROTEINS; MESOCRICETUS; MICE; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; ONCOGENE PROTEINS; PHYLOGENY; RATS; SALMO SALAR; SEQUENCE HOMOLOGY, AMINO ACID; XENOPUS PROTEINS;

EID: 2942589064     PISSN: 14712148     EISSN: None     Source Type: Journal    
DOI: 10.1186/1471-2148-4-6     Document Type: Article

References (32)

1. Bonifati V, Rizzu P, van Baren MJ, Schaap O, Breedveld GJ, Krieger E, Dekker MC, Squitieri F, Ibanez P, Joosse M, van Dongen JW, Vanacore N, van Swieten JC, Brice A, Meco G, van Duijn CM, Oostra BA, Heutink P: Mutations in the DJ-1 gene associated with autosomal recessive early-onset parkinsonism. Science 2003, 299:256-259.
2. Miller David W., Ahmad Rili, Hague Stephen, Baptista Melisa J., Canet-Aviles Rosa, McLendon Chris, Carter Donald M., Zhu Peng-Peng, Stadler Julia, Chandran Jayanth, Klinefelter Gary R., Blackstone Craig, Cookson Mark R.: L166P mutant DJ-1, causative for recessive Parkinson's disease, is degraded through the ubiquitin-proteasome system. Journal of Biological Chemistry 2003, 278:36588-336595.
3. Nagakubo D, Taira T, Kitaura H, Ikeda M, Tamai K, Iguchi-Ariga SM, Ariga H: DJ-1, a novel oncogene which transforms mouse NIH3T3 cells in cooperation with ras. Biochem Biophys Res Commun 1997, 231:509-513.
4. Takahashi K, Taira T, Niki T, Seino C, Iguchi-Ariga SM, Ariga H: DJ-1 positively regulates the androgen receptor by impairing the binding of PIASx alpha to the receptor. J Biol Chem 2001, 276:37556-37563.
5. Hod Y, Pentyala SN, Whyard TC, El-Maghrabi MR: Identification and characterization of a novel protein that regulates RNAprotein interaction. J Cell Biochem 1999, 72:435-444.
6. Mitsumoto A, Nakagawa Y, Takeuchi A, Okawa K, Iwamatsu A, Takanezawa Y: Oxidized forms of peroxiredoxins and DJ-1 on two-dimensional gels increased in response to sublethal levels of paraquat. Free Radic Res 2001, 35:301-310.
7. Mitsumoto A, Nakagawa Y: DJ-1 is an indicator for endogenous reactive oxygen species elicited by endotoxin. Free Radic Res 2001, 35:885-893.
8. Cookson MR: Pathways to Parkinsonism. Neuron 2003, 37:7-10.
9. Zhang Y, Gao J, Chung KK, Huang H, Dawson VL, Dawson TM: Parkin functions as an E2-dependent ubiquitin- protein ligase and promotes the degradation of the synaptic vesicle-associated protein, CDCrel-1. Proceedings of the National Academy Sciences USA 2000, 97:13354-13359.
10. Quigley PM, Korotkov K, Baneyx F, Hol WG: The 1.6-A crystal structure of the class of chaperones represented by Escherichia coli Hsp31 reveals a putative catalytic triad. Proc Natl Acad Sci U S A 2003, 100:3137-3142.
11. Horvath MM, Grishin NV: The C-terminal domain of HPII catalase is a member of the type I glutamine amidotransferase superfamily. Proteins 2001, 42:230-236.
12. Halio SB, Blumentals ,II, Short SA, Merrill BM, Kelly RM: Sequence, expression in Escherichia coli, and analysis of the gene encoding a novel intracellular protease (PfpI) from the hyperthermophilic archaeon Pyrococcus furiosus. J Bacteriol 1996, 178:2605-2612.
13. Du X, Choi IG, Kim R, Wang W, Jancarik J, Yokota H, Kim SH: Crystal structure of an intracellular protease from Pyrococcus horikoshii at 2-A resolution. Proc Natl Acad Sci U S A 2000, 97:14079-14084.
14. Mizote T, Tsuda M, Nakazawa T, Nakayama H: The thiJ locus and its relation to phosphorylation of hydroxymethylpyrimidine in Escherichia coli. Microbiology 1996, 142 ( Pt 10):2969-2974.
15. Mizote T, Tsuda M, Smith DD, Nakayama H, Nakazawa T: Cloning and characterization of the thiD/J gene of Escherichia coli encoding a thiamin-synthesizing bifunctional enzyme, hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase. Microbiology 1999, 145 ( Pt 2):495-501.
16. Huai Q, Sun Y, Wang H, Chin LS, Li L, Robinson H, Ke H: Crystal structure of DJ-1/RS and implication on familial Parkinson's disease. FEBS Lett 2003, 549:171-175.
17. Honbou K, Suzuki NN, Horiuchi M, Niki T, Taira T, Ariga H, Inagaki F: The crystal structure of DJ-1, a protein related to male fertility and Parkinson's disease. J Biol Chem 2003, 278:31380-31384.
18. Wilson MA, Collins JL, Hod Y, Ringe D, Petsko GA: The 1.1-A resolution crystal structure of DJ-1, the protein mutated in autosomal recessive early onset Parkinson's disease. Proc Natl Acad Sci U S A 2003, 100:9256-9261.
19. Tao X, Tong L: Crystal structure of human DJ-1, a protein associated with early-onset Parkinson's diseasec. J Biol Chem 2003, 278:31372-31379.
20. Lee SJ, Kim SJ, Kim IK, Ko J, Jeong CS, Kim GH, Park C, Kang SO, Suh PG, Lee HS, Cha SS: Crystal structures of human DJ-1 and Escherichia coli Hsp31 that share an evolutionarily conserved domain. J Biol Chem 2003, 278:44552-44559.
21. Olzmann JA, Brown K, Wilkinson KD, Rees HD, Huai Q, Ke H, Levey AI, Li L, Chin LS: Familial Parkinson's disease-associated L166P mutation disrupts DJ-1 protein folding and function. J Biol Chem 2003:, in press (epub doi:10.1074/jbc.M311017200).
22. Park YS, Min HJ, Ryang SH, Oh KJ, Cha JS, Kim HY, Cho TJ: Characterization of salicylic acid-induced genes in Chinese cabbage. Plant Cell Rep 2003, 21:1027-1034.
23. Snowden L, Blumentals II, Kelly R: Regulation of Proteolytic Activity in the Hyperthermophile Pyrococcus furiosus. Applied and Environmental Microbiology 1992, 58:1134-1141.
24. de Nobel H, Lawrie L, Brul S, Klis F, Davis M, Alloush H, Coote P: Parallel and comparative analysis of the proteome and transcriptome of sorbic acid-stressed Saccharomyces cerevisiae. Yeast 2001, 18:1413-1428.
25. Trotter EW, Kao CM, Berenfeld L, Botstein D, Petsko GA, Gray JV: Misfolded proteins are competent to mediate a subset of the responses to heat shock in Saccharomyces cerevisiae. J Biol Chem 2002, 277:44817-44825.
26. Sjolander K: Phylogenomic inference of protein molecular function: advances and challenges. Bioinformatics 2004, 20:170-179.
27. Hague S, Rogaeva E, Hernandez D, Gulick C, Singleton A, Hanson M, Johnson J, Weiser R, Gallardo M, Ravina B, Gwinn-Hardy K, Crawley A, St George-Hyslop PH, Lang AE, Heutink P, Bonifati V, Hardy J: Early-onset Parkinson's disease caused by a compound heterozygous DJ-1 mutation. Ann Neurol 2003, 54:271-274.
28. Abou-Sleiman PM, Healy DG, Quinn N, Lees AJ, Wood NW: The role of pathogenic DJ-1 mutations in Parkinson's disease. Ann Neurol 2003, 54:283-286.
29. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25:3389-3402.
30. Notredame C, Higgins DG, Heringa J: T-Coffee: A novel method for fast and accurate multiple sequence alignment. J Mol Biol 2000, 302:205-217.
31. Karplus K, Barrett C, Hughey R: Hidden Markov models for detecting remote protein homologies. Bioinformatics 1998, 14:846-856.
32. Page RD: TreeView: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 1996, 12:357-358.