Evaluation of the Polymorphisms Associated with Tandem Repeats for Pseudomonas aeruginosa Strain Typing

Journal of Clinical Microbiology

Volumn 41, Issue 11, 2003, Pages 4991-4997

  Onteniente, Lucie ^a   Brisse, Sylvain ^c,e   Tassios, Panayotis T ^d   Vergnaud, Gilles ^a,b  

^a UNIVERSITÉ PARIS SACLAY   (France)

^b CENTRE D ETUDES DU BOUCHET   (France)

^c UTRECHT UNIVERSITY   (Netherlands)

^d UNIVERSITY OF ATHENS MEDICAL SCHOOL   (Greece)

^e INSTITUT PASTEUR   (France)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL ENZYME; PROTEIN SPEI; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; DNA POLYMORPHISM; DNA SEQUENCE; GENE LOCUS; GENOTYPE; NONHUMAN; PRIORITY JOURNAL; PSEUDOMONAS AERUGINOSA; PULSED FIELD GEL ELECTROPHORESIS; REPRODUCIBILITY; RIBOTYPING; SEQUENCE ANALYSIS; VARIABLE NUMBER OF TANDEM REPEAT;

BASE SEQUENCE; DNA PRIMERS; ELECTROPHORESIS, GEL, PULSED-FIELD; GENOTYPE; HUMANS; MINISATELLITE REPEATS; PHYLOGENY; POLYMORPHISM, GENETIC; PSEUDOMONAS AERUGINOSA;

BACTERIA (MICROORGANISMS); NEGIBACTERIA; PSEUDOMONAS; PSEUDOMONAS AERUGINOSA;

EID: 0242677631     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.41.11.4991-4997.2003     Document Type: Article

References (24)

1. Bennekov, T., H. Colding, B. Ojeniyi, M. W. Bentzon, and N. Hoiby. 1996. Comparison of ribotyping and genome fingerprinting of Pseudomonas aeruginosa isolates from cystic fibrosis patients. J. Clin. Microbiol. 34:202-204.
2. Benson, G. 1999. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 27:573-580.
3. Brisse, S., V. Fussing, B. Ridwan, J. Verhoef, and R. J. Willems. 2002. Automated ribotyping of vancomycin-resistant Enterococcus faecium isolates. J. Clin. Microbiol. 40:1977-1984.
4. Brisse, S., D. Milatovic, A. C. Fluit, K. Kusters, A. Toelstra, J. Verhoef, and F. J. Schmitz. 2000. Molecular surveillance of European quinolone-resistant clinical isolates of Pseudomonas aeruginosa and Acinetobacter spp. using automated ribotyping. J. Clin. Microbiol. 38:3636-3645.
5. Dabrowski, W., U. Czekajlo-Kolodziej, D. Medrala, and S. Giedrys-Kalemba. 2003. Optimisation of AP-PCR fingerprinting discriminatory power for clinical isolates of Pseudomonas aeruginosa. FEMS Microbiol. Lett. 218:51-57.
6. Denamur, E., B. Picard, G. Decoux, J. B. Denis, and J. Elion. 1993. The absence of correlation between allozyme and rrn RFLP analysis indicates a high gene flow rate within human clinical Pseudomonas aeruginosa isolates. FEMS Microbiol. Lett. 110:275-280.
7. Denoeud, F., G. Vergnaud, and G. Benson. 2003. Predicting human minisatellite polymorphism. Genome Res. 13:856-867.
8. Deretic, V., and W. M. Konyecsni. 1990. A procaryotic regulatory factor with a histone H1-like carboxy-terminal domain: clonal variation of repeats within algP, a gene involved in regulation of mucoidy in Pseudomonas aeruginosa. J. Bacteriol. 172:5544-5554.
9. Foissaud, V., J. M. Puyhardy, J. C. Chapalain, H. Salord, J. J. Depina, M. Morillon, P. Nicolas, and J. D. Perrier-Gros-Claude. 1999. Inter-laboratory reproducibility of pulsed-field electrophoresis for the study of 12 types of Pseudomonas aeruginosa. Pathol Biol (Paris) 47:1053-1059. (In French.)
10. Grundmann, H., C. Schneider, D. Hartung, F. D. Daschner, and T. L. Pitt. 1995. Discriminatory power of three DNA-based typing techniques for Pseudomonas aeruginosa. J. Clin. Microbiol. 33:528-534.
11. Jefrreys, A. J., V. Wilson, and S. L. Thein. 1985. Individual-specific 'fingerprints' of human DNA. Nature 316:76-79.
12. Le Flèche, P., M. Fabre, F. Denoeud, J. L. Koeck, and G. Vergnaud. 2002. High resolution, on-line identification of strains from the Mycobacterium tuberculosis complex based on tandem repeat typing. BMC Microbiol. 2:37.
13. Le Flèche, P., Y. Hauck, L. Onteniente, A. Prieur, F. Denoeud, V. Ramisse, P. Sylvestre, G. Benson, F. Ramisse, and G. Vergnaud. 2001. A tandem repeats database for bacterial genomes: application to the genotyping of Yersinia pestis and Bacillus anthracis. BMC Microbiol. 1:2.
14. Livermore, D. M. 2002. Multiple mechanisms of antimicrobial resistance in Pseudomonas aeruginosa: our worst nightmare? Clin. Infect. Dis. 34:634-640.
15. Lopes, J., H. Debrauwere, J. Buard, and A. Nicolas. 2002. Instability of the human minisatellite CEB1 in rad27Delta and dna2-1 replication-deficient yeast cells. EMBO J. 21:3201-3211.
16. Picard, B., E. Denamur, A. Barakat, J. Elion, and P. Goullet. 1994. Genetic heterogeneity of Pseudomonas aeruginosa clinical isolates revealed by esterase electrophoretic polymorphism and restriction fragment length polymorphism of the ribosomal RNA gene region. J. Med. Microbiol. 40:313-322.
17. Pirnay, J. P., D. De Vos, C. Cochez, F. Bilocq, A. Vanderkelen, M. Zizi, B. Ghysels, and P. Cornelis. 2002. Pseudomonas aeruginosa displays an epidemic population structure. Environ. Microbiol. 4:898-911.
18. Pitt, T. L., D. M. Livermore, D. Pitcher, A. C. Vatopoulos, and N. J. Legakis. 1989. Multiresistant serotype O 12 Pseudomonas aeruginosa: evidence for a common strain in Europe. Epidemiol. Infect. 103:565-576.
19. Renders, N., Y. Romling, H. Verbrugh, and A. van Belkum. 1996. Comparative typing of Pseudomonas aeruginosa by random amplification of polymorphic DNA or pulsed-field gel electrophoresis of DNA macrorestriction fragments. J. Clin. Microbiol. 34:3190-3195.
20. Stover, C. K., X. Q. Pham, A. L. Erwin, S. D. Mizoguchi, P. Warrener, M. J. Hickey, F. S. Brinkman, W. O. Hufnagle, D. J. Kowalik, M. Lagrou, R. L. Garber, L. Goltry, E. Tolentino, S. Westbrock-Wadman, Y. Yuan, L. L. Brody, S. N. Coulter, K. R. Folger, A. Kas, K. Larbig, R. Lim, K. Smith, D. Spencer, G. K. Wong, Z. Wu, I. T. Paulsen, J. Reizer, M. H. Saier, R. E. Hancock, S. Lory, and M. V. Olson. 2000. Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen. Nature 406:959-964.
21. Tassios, P. T., V. Gennimata, A. N. Maniatis, C. Fock, N. J. Legakis, and the Greek Pseudomonas aeruginosa Study Group. 1998. Emergence of multidrug resistance in ubiquitous and dominant Pseudomonas aeruginosa serogroup O:11. J. Clin. Microbiol. 36:897-901.
22. Tenover, F. C., R. D. Arbeit, R. V. Goering, P. A. Mickelsen, B. E. Murray, D. H. Persing, and B. Swaminathan. 1995. Interpreting chromosomal DNA restriction patterns produced by pulsed-field gel electrophoresis: criteria for bacterial strain typing. J. Clin. Microbiol. 33:2233-2239.
23. van Belkum, A., M. Struelens, A. de Visser, H. Verbrugh, and M. Tibayrenc. 2001. Role of genomic typing in taxonomy, evolutionary genetics, and microbial epidemiology. Clin. Microbiol. Rev. 14:547-560.
24. Vergnaud, G., and F. Denoeud. 2000. Minisatellites: mutability and genome architecture. Genome Res. 10:899-907.