Enzymology of electron transport: Energy generation with geochemical consequences

Reviews in Mineralogy and Geochemistry

Volumn 59, Issue , 2005, Pages 27-52

  DiChristina, Thomas J ^a   Fredrickson, Jim K ^b   Zachara, John M ^b  

^a GEORGIA INSTITUTE OF TECHNOLOGY   (United States)

^b PACIFIC NORTHWEST NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 29244487882     PISSN: 15296466     EISSN: None     Source Type: Book Series    
DOI: 10.2138/rmg.2005.59.3     Document Type: Review

References (146)

1. Anderson RT, Lovley DR (1999) Naphthalene and benzene degradation under Fe(II)-reducing conditions in petroleum-contaminated aquifers. Biorem J 3:121-135
2. Arnold RG, DiChristina TJ, Hoffmann MR (1988) Reductive dissolution of iron-oxides by Pseudomonas sp. 200. Biotech Bioeng 32:1081-1096
3. Aubert C, Brugna M, Dolla A, Bruschi M, Giudici-Orticoni MT (2000) A sequential electron transfer from hydrogenases to cytochromes in sulfate-reducing bacteria. Biochim Biophys Acta 1476:85-92
4. Baedecker MJ, Cozzarelli IM, Eganhouse RP, Siegel DI, Bennett PC (1993) Crude-oil in a shallow sand and gravel aquifer. 3. Biogeochemical reactions and mass-balance modeling in anoxic groundwater. Appl Geochem 8:569-586
5. Bagramyan K, Trchounian A (2003) Structural and functional features of formate hydrogen lyase, an enzyme of mixed-acid fermentation from Escherichia coli. Biochemistry-Moscow 68:1159-1170
6. Beliaev AS, Saffarini DA (1998) Shewanella putrefaciens mtrB encodes an outer membrane protein required for Fe(III) and Mn(IV) reduction. J Bacteriol 180:6292-7
7. Bonneville S, Van Cappellen P, Behernds T (2004) Microbial reduction of iron(III) oxyhydroxides: effects of mineral solubility and availability. Chem Geol 212:255-268
8. Brooks SC, Fredrickson JK, Carroll SL, Kennedy DW, Zachara JM, Plymale AE, Kelly SD, Kemner KM, Fendorf S (2003) Inhibition of bacterial U(VI) reduction by calcium. Environ Sci Technol 37:1850-1858
9. Burdige DJ (1993) The biogeochemistry of manganese and iron reduction in marine-sediments. Earth-Science Reviews 35:249-284
10. Burdige DJ, Dhakar SP, Nealson KH (1992) Effects of manganese oxide mineralogy on microbial and chemical manganese reduction. Geomicrobiol J 10:27-48
11. Butler A (2003) Iron acquisition: straight up and on the rocks? Nature Struct Biol 10:240-241
12. Caccavo F, Blakemore RP, Lovley DR (1992) A hydrogen-oxidizing, Fe(III)-reducing microorganism from the Great Bay Estuary, New-Hampshire. Appl Environ Microbiol 58:3211-3216
13. Cervini-Silva J, Kostka JE, Larson RA, Stucki JW, Wu J (2003) Dehydrochlorination of 1,1,1-trichloroethane and pentachloroethane by microbially reduced ferruginous smectite. Environ Toxicol Chem 22:1046-1050
14. Chin KJ, Esteve-Nunez A, Leang C, Lovley DR (2004) Direct correlation between rates of anaerobic respiration and levels of mRNA for key respiratory genes in Geobacter sulfurreducens. Appl Environ Microbiol 70: 5183-5189
15. Coates JD, Cole KA, Chakraborty R, O'Connor SM, Achenbach LA (2002) Diversity and ubiquity of bacteria capable of utilizing humic substances as electron donors for anaerobic respiration. Appl Environ Microbiol 68:2445-52
16. Coates JD, Ellis DJ, Blunt-Harris EL, Gaw CV, Roden EE, Lovley DR (1998) Recovery of humic-reducing bacteria from a diversity of environments. Appl Environ Microbiol 64:1504-9
17. Cochran JK, Carey AE, Sholkovitz ER, Suprenant LD (1986) The geochemistry of uranium and thorium in coastal marine sediments and sediment pore waters. Geochim Cosmochim Acta 50:663-680
18. Cui DQ, Eriksen TE (1996) Reduction of pertechnetate by ferrous iron in solution: Influence of sorbed and precipitated Fe(II). Environ Sci Technol 30:2259-2262
19. Cummings DE, Caccavo F, Fendorf S, Rosenzweig RF (1999) Arsenic mobilization by the dissimilatory Fe(III)-reducing bacterium Shewanella alga BrY. Environ Sci Technol 33:723-729
20. De Luca G, De Philip P, Dermoun Z, Rousset M, Vermeglio A (2001) Reduction of technetium(VII) by Desulfovibrio, fructosovorans is mediated by the nickel-iron hydrogenase. Appl Environ Microbiol 67: 4583-4587
21. Desvaux M, Parham NJ, Scott-Tucker A, Henderson IR (2004) The general secretory pathway: a general misnomer? Trends Microbiol 12:306-309
22. DiChristina TJ, Adiga M, Bates D, Burns J, Haller CA (2005) Submitted for review.
23. 3+. J Bacteriol 176:1468-74
24. DiChristina TJ, Moore CM, Haller CA (2002) Dissimilatory Fe(III) and Mn(IV) reduction by Shewanella putrefaciens requires ferE, a homolog of the pulE (gspE) type II protein secretion gene. J Bacteriol 184: 142-51
25. Dong HL, Kostka JE, Kim J (2003a) Microscopic evidence for microbial dissolution of smectite. Clays Clay Mineral 51:502-512
26. Dong HL, Kukkadapu RK, Fredrickson JK, Zachara JM, Kennedy DW, Kostandarithes HM (2003b) Microbial reduction of structural Fe(III) in illite and goethite. Environ Sci Technol 37:1268-1276
27. 2. Radiochim Acta 58-9:67-70
28. 2. Characterization. Environ Sci Technol 26:79-85
29. Filloux A (2004) The underlying mechanisms of type II protein secretion. Biochim Biophys Acta 1694:163-179
30. Finch R, Murakami T (1999) Systematics and paragenesis of uranium minerals. Rev Mineral 38:91-180
31. Finneran KT, Anderson RT, Nevin KP, Lovley DR (2002) Potential for Bioremediation of uranium-contaminated aquifers with microbial U(VI) reduction. Soil Sediment Contam 11:339-357
32. Francis AJ, Dodge CJ, Lu FL, Halada GP, Clayton CR (1994) XPS and XANES studies of uranium reduction by Clostridium Sp. Environ Sci Technol 28:636-639
33. Fredrickson JK, Kota S, Kukkadapu RK, Liu CX, Zachara JM (2003) Influence of electron donor/acceptor concentrations on hydrous ferric oxide (HFO) bioreduction. Biodegradation 14:91-103
34. Fredrickson JK, Zachara JM, Kennedy DW, Dong HL, Onstott TC, Hinman NW, Li SM (1998) Biogenic iron mineralization accompanying the dissimilatory reduction of hydrous ferric oxide by a groundwater bacterium. Geochim Cosmochim Acta 62:3239-3257
35. Fredrickson JK, Zachara JM, Kennedy DW, Duff MC, Gorby YA, Li SMW, Krupka KM (2000) Reduction of U(VI) in goethite (alpha-FeOOH) suspensions by a dissimilatory metal-reducing bacterium. Geochim Cosmochim Acta 64:3085-3098
36. - by sediment-associated biogenic Fe(II). Geochim Cosmochim Acta 68:3171-3187
37. Fredrickson JK, Zachara. JM, Kennedy DW, Liu CX, Duff MC, Hunter DB, Dohnalkova A (2002) Influence of Mn oxides on the reduction of uranium(VI) by the metal-reducing bacterium Shewanella putrefaciens. Geochim Cosmochim Acta 66:3247-3262
38. Fredrickson JK, Zachara JM, Kukkadapu RK, Gorby YA, Smith SC, Brown CF (2001) Biotransformation of Ni-substituted hydrous ferric oxide by an Fe(III)-reducing bacterium. Environ Sci Technol 35:703-712
39. Ganesh R, Robinson KG, Reed GD, Sayler GS (1997) Reduction of hexavalent uranium from organic complexes by sulfate- and iron-reducing bacteria. Appl Environ Microbiol 63:4385-4391
40. Glasauer S, Weidler PG, Langley S, Beveridge TJ (2003) Controls on Fe reduction and mineral formation by a subsurface bacterium. Geochim Cosmochim Acta 67:1277-1288
41. Gilbert B, Banfield JF (2005) Molecular-scale processes involving nanoparticulate minerals in biogeochemical systems. Rev Mineral Geochem 59:109-155
42. Gorby YA, Lovley DR (1992) Enzymatic uranium precipitation. Environ Sci Technol 26:205-207
43. Grenthe I (1992) Chemical Thermodynamics of Uranium. North Holland, Amsterdam
44. Haas JR, DiChristina TJ (2002) Effects of Fe(III) chemical speciation on dissimilatory Fe(III) reduction by Shewanella putrefaciens. Environ Sci Technol 63:373-380
45. Haines RI, Owen DG, Vandergraaf TF (1987) Technetium-iron oxide reactions under anaerobic conditions: a Fourier transform infrared, FTIR study. Nuclear J Canada 1:32-37
46. Hansel CM, Benner SG, Neiss J, Dohnalkova A, Kukkadapu RK, Fendorf S (2003) Secondary mineralization pathways induced by dissimilatory iron reduction of ferrihydrite under advective flow. Geochim Cosmochim Acta 67:2977-2992
47. Hansel CM, Benner SG, Nico P, Fendorf S (2004) Structural constraints of ferric (hydr)oxides on dissimilatory iron reduction and the fate of Fe(II). Geochim Cosmochim Acta 68:3217-3229
48. Harada E, Kumagai J, Ozawa K, Imabayashi S, Tsapin AS, Nealson KH, Meyer TE, Cusanovich MA, Akutsu H (2002) A directional electron transfer regulator based on heme-chain architecture in the small tetraheme cytochrome c from Shewanella oneidensis. FEBS Lett 532:333-7
49. Heidelberg JF, Paulsen IT, Nelson KE, Gaidos EJ, Nelson WC, Read TD, Eisen JA, Seshadri R, Ward N, Methé B, et al. (2002) Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis. Nat Biotechnol 20:1118-23
50. Hernandez ME, Kappler A, Newman DK (2004) Phenazines and other redox-active antibiotics promote microbial mineral reduction. Appl Environ Microbiol 70:921-8
51. Kukkadapu RK, Zachara JM, Fredrickson JK, Kennedy DW, Dohnalkova AC, McCready DE (2005) Ferrous hydroxy carbonate is a stable transformation product of biogenic magnetite. Am Mineral 90:510-515
52. Kashefi K, Lovley DR (2000) Reduction of Fe(III), Mn(IV), and toxic metals at 100 degrees C by Pyrobaculum islandicum. Appl Environ Microbiol 66:1050-1056
53. Khijniak TV, Medvedeva-Lyalikova NN, Simonoff M (2003) Reduction of pertechnetate by haloalkaliphilic strains of Halomonas. FEMS Microbiol Ecol 44:109-115
54. Kieft TL, Fredrickson JK, Onstott TC, Gorby YA, Kostandarithes HM, Bailey TJ, Kennedy DW, Li SW, Plymale AE, Spadoni CM, Gray MS (1999) Dissimilatory reduction of Fe(III) and other electron acceptors by a Thermus isolate. Appl Environ Microbiol 65:1214-1221
55. Kostka JE, Haefele E, Viehweger R, Stucki JW (1999) Respiration and dissolution of iron(III) containing clay minerals by bacteria. Environ Sci Technol 33:3127-3133
56. Kostka JE, Stucki JW, Nealson, KH, Wu J (1996) Reduction of structural Fe(III) in smectite by a pure culture of Shewanella putrefaciens MR-1. Clays Clay Mineral 44:522-529
57. Kostka JE, Luther GW, Nealson KH (1995) Chemical and biological reduction of Mn(III)-pyrophosphate complexes: potential importance of dissolved Mn(III) as an environmental oxidant. Geochim Cosmochim Acta 59:885-894
58. Kukkadapu RK, Zachara JM, Fredrickson JK, Kennedy DW (2004) Biotransformation of two-line silica-ferrihydrite by a dissimilatory Fe(III)-reducing bacterium: formation of carbonate green rust in the presence of phosphate. Geochim Cosmochim Acta 68:2799-2914
59. Kukkadapu RK, Zachara JM, Fredrickson JK, Smith SC, Dohnalkova AC, Russell CK (2003) Transformation of 2-line ferrihydrite to 6-line ferrihydrite under oxic and anoxic conditions. Am Mineral 88:1903-1914
60. Kukkadapu RK, Zachara JM, Smith SC, Fredrickson JK, Liu CX (2001) Dissimilatory bacterial reduction of Al-substituted goethite in subsurface sediments. Geochim Cosmochim Acta 65:2913-2924
61. Langmuir D (1997) Aqueous Environmental Geochemistry. Prentice Hall, Upper Saddle River, New Jersey
62. Leang C, Coppi MV, Lovley DR (2003) OmcB, a c-type polyheme cytochrome, involved in Fe(III) reduction in Geobacter sulfurreducens. J Bacteriol 185:2096-2103
63. Leang C, Lovley DR (2005) Regulation of two highly similar genes, OmcB and OmcC, in a 10 kb chromosomal duplication in Geobacter sulfurreducens. Microbiology-Sgm 151:1761-1767
64. Lengeler JW, Drews G, Schlegel HG (1999) Biology of the Prokaryotes. Georg Thieme Verlag, Stuttgart, Germany
65. Liger E, Charlet L, Van Cappellen P (1999) Surface catalysis of uranium(VI) reduction by iron(II). Geochim Cosmochim Acta 63:2939-2955
66. Liu CG, Zachara JM, Gorby YA, Szecsody JE, Brown CF (2001a) Microbial reduction of Fe(III) and sorption/precipitation of Fe(II) on Shewanella putrefaciens strain CN32. Environ Sci Technol 35:1385-1393
67. Liu CX, Gorby YA, Zachara JM, Fredrickson JK, Brown CF (2002a) Reduction kinetics of Fe(III), Co(III), U(VI) Cr(VI) and Tc(VII) in cultures of dissimilatory metal-reducing bacteria. Biotechnol Bioeng 80: 637-649
68. Liu CX, Kota S, Zachara JM, Fredrickson JK, Brinkman CK (2001b) Kinetic analysis of the bacterial reduction of goethite. Environ Sci Technol 35:2482-2490
69. 2(S)(g). Environ Sci Technol 36:1452-1459
70. Lloyd JR (2003) Microbial reduction of metals and radionuclides. FEMS Microbiol Rev 27:411-425
71. Lloyd JR, Cole JA, Macaskie LE (1997) Reduction and removal of heptavalent technetium from solution by Escherichia coli. J Bacteriol 179:2014-2021
72. Lloyd JR, Leang C, Myerson ALH, Coppi MV, Cuifo S, Methé B, Sandler SJ, Lovley DR (2003) Biochemical and genetic characterization of PpcA, a periplasmic c-type cytochrome in Geobacter sulfurreducens. Biochem J 369:153-161
73. Lloyd JR, Sole VA, Van Praagh CVG, Lovley DR (2000) Direct and Fe(II)-mediated reduction of technetium by Fe(III)-reducing bacteria. Appl Environ Microbiol 66:3743-3749
74. Lovley DR (1995) Bioremediation of organic and metal contaminants with dissimilatory metal reduction. J Indust Microbiol 14:85-93
75. Lovley DR, Coates JD, BluntHarris EL, Phillips EJP, Woodward JC (1996) Humic substances as electron acceptors for microbial respiration. Nature 382:445-448
76. Lovley DR, Holmes DE, Nevin KP (2004) Dissimilatory Fe(III) and Mn(IV) reduction. Adv Microb Physiol 49:219-86
77. Lovley DR, Phillips EJP (1986) Availability of ferric iron for microbial reduction in bottom sediments of the fresh-water Tidal Potomac River. Appl Environ Microbiol 52:751-757
78. Lovley DR, Phillips EJP (1988) Novel mode of microbial energy-metabolism - organic-carbon oxidation coupled to dissimilatory reduction of iron or manganese. Appl Environ Microbiol 54:1472-1480
79. Lovley DR, Phillips EJP, Gorby YA, Landa ER (1991) Microbial reduction of uranium. Nature 350:413-416
80. Lovley DR, Stolz JF, Nord GL, Phillips EJP (1987) Anaerobic production of magnetite by a dissimilatory iron-reducing microorganism. Nature 330:252-254
81. Lovley DR, Widman PK, Woodward JC, Phillips EJP (1993) Reduction of uranium by cytochrome-C(3) of Desulfovibrio Vulgaris. Appl Environ Microbiol 59:3572-3576
82. Lovley DR, Woodward JC (1996) Mechanisms for chelator stimulation of microbial Fe(III)-oxide reduction. Chem Geol 132:19-24
83. Lyalikova NN, Khizhnyak TV (1996) Reduction of heptavalent technetium by acidophilic bacteria of the genus Thiobacillus. Microbiology 65:468-473
84. Madigan MT, Martinko JM (2006) Brock Biology of Microorganisms Prentice Hall, Upper Saddle River, NJ
85. Methé BA, Webster J, Nevin K, Butler J, Lovley DR (2005) DNA microarray analysis of nitrogen fixation and Fe(III) reduction in Geobacter sulfurreducens. Appl Environ Microbiol 71:2530-2538
86. Meyer RE, Arnold WD, Case FI, O'Kelley GD (1991) Solubilities of Tc(IV)-oxides. Radiochim Acta 55:11-18
87. Myers CR, Myers JM (1992) Localization of cytochromes to the outer membrane of anaerobically grown Shewanella putrefaciens MR-1. J Bacteriol 174:3429-38
88. Myers CR, Myers JM (1993a) Ferric reductase is associated with the membranes of anaerobically grown Shewanella Putrefaciens MR-1. FEMS Microbiol Lett 108:15-22
89. Myers CR, Myers JM (1993b) Role of menaquinone in the reduction of fumarate, nitrate, iron(III) and manganese(IV) by Shewanella Putrefaciens MR-1. FEMS Microbiol Lett 114:215-222
90. Myers CR, Myers JM (1997) Cloning and sequence of cymA a gene encoding a tetraheme cytochrome c required for reduction of iron(III), fumarate, and nitrate by Shewanella putrefaciens MR-1. J Bacteriol 179:1143-1152
91. Myers CR, Myers JM (2002) MtrB is required for proper incorporation of the cytochromes OmcA and OmcB into the outer membrane of Shewanella putrefaciens MR-1. Appl Environ Microbiol 68:5585-94
92. Myers CR, Myers JM (2003a) Cell surface exposure of the outer membrane cytochromes of Shewanella oneidensis MR-1. Lett Appl Microbiol 37:254-258
93. Myers CR, Nealson KH (1988) Microbial reduction of manganese oxides - interactions with iron and sulfur. Geochim Cosmochim Acta 52:2727-2732
94. Myers CR, Nealson KH (1990) Respiration-linked proton translocation coupled to anaerobic reduction of manganese(IV) and iron(III) in Shewanella putrefaciens MR-1. J Bacteriol 172:6232-8
95. Myers JM, Myers CR (2000) Role of the tetraheme cytochrome CymA in anaerobic electron transport in cells of Shewanella putrefaciens MR-1 with normal levels of menaquinone. J Bacteriol 182:67-75
96. Myers JM, Myers CR (2001) Role for outer membrane cytochromes OmcA and OmcB of Shewanella putrefaciens MR-1 in reduction of manganese dioxide. Appl Environ Microbiol 67:260-9
97. Myers JM, Myers CR (2003b) Overlapping role of the outer membrane cytochromes of Shewanella oneidensis MR-1 in the reduction of manganese(IV) oxide. Lett Appl Microbiol 37:21-5
98. Nealson KH, Belz A, McKee B (2002) Breathing metals as a way of life: geobiology in action. Antonie Van Leeuwenhoek Int J Gen Molec Microbiol 81:215-222
99. Nealson KH, Little B (1997) Breathing manganese and iron: solid-state respiration. Adv Appl Microbiol 45: 213-239
100. Nealson KH, Myers CR (1992) Microbial reduction of manganese and iron: new approaches to carbon cycling. Appl Environ Microbiol 58:439-43
101. Nealson KH, Saffarini D (1994) Iron and manganese in anaerobic respiration - environmental significance, physiology, and regulation. Annu Rev Microbiol 48:311-343
102. Nelson KE, Methé B (2005) Metabolism and genomics: adventures derived from complete genome sequencing. Rev Mineral Geochem 59:279-294
103. Nevin KP, Lovley DR (2000) Lack of production of electron-shuttling compounds or solubilization of Fe(III) during reduction of insoluble Fe(III) oxide by Geobacter metallireducens. Appl Environ Microbiol 66: 2248-2251
104. Nevin KP, Lovley DR (2002) Mechanisms for accessing insoluble Fe(III) oxide during dissimilatory Fe(III) reduction by Geothrix fermentans. Appl Environ Microbiol 68:2294-2299
105. Newman DK, Gralnick JA (2005) What genetics offers geobiology. Rev Mineral Geochem 59:9-26
106. Newman DK, Kolter R (2000) A role for excreted quinones in extracellular electron transfer. Nature 405:94-97
107. Ortiz-Bernad I, Anderson RT, Vrionis HA, Lovley DR (2004) Resistance of solid-phase U(VI) to microbial reduction during in situ bioremediation of uranium-contaminated groundwater. Appl Environ Microbiol 70:7558-7560
108. Pasilis SP, Pemberton JE (2003) Speciation and coordination chemistry of uranyl(VI)-citrate complexes in aqueous solution. Abstr Papers Am Chem Soc 225:U807-U807
109. Payne AN, DiChristina TJ (2005) Submitted for review.
110. 3 mutant. Appl Environ Microbiol 68:3129-3132
111. 3 of Desulfovibrio desulfuricans strain G20. Arch Microbiol 181:398-406
112. Pitts KE, Dobbin PS, Reyes-Ramirez F, Thomson AJ, Richardson DJ, Seward HE (2003) Characterization of the Shewanella oneidensis MR-1 decaheme cytochrome MtrA: expression in Escherichia coli confers the ability to reduce soluble Fe(III) chelates. J Biol Chem 278:27758-65
113. Pugsley AP (1993) The complete general secretory pathway in gram-negative bacteria. Microbiol Rev 57:50-108
114. Pugsley AP, Francetic O, Hardie K, Possot OM, Sauvonnet N, Seydel A (1997) Pullulanase: model protein substrate for the general secretory pathway of gram-negative bacteria. Folia Microbiologica 42:184-192
115. 2O(Am). Inorganic Chemistry 29:260-264
116. Rard JA (1999) Chemical Thermodynamics of Technetium. Elsevier, Amsterdam.
117. Rard JA (1983) Critical review of the chemistry and thermodynamics of technetium and some of its inorganic compounds and aqueous species. Livermore, California
118. Richardson DJ (2000) Bacterial respiration: a flexible process for a changing environment. Microbiology-Sgm 146:551-571
119. Roden EE (2003) Fe(III) oxide reactivity toward biological versus chemical reduction. Environ Sci Technol 37: 1319-1324
120. Roden EE, Sobolev D, Glazer B, Luther GW (2004) Potential for microscale bacterial Fe redox cycling at the aerobic-anaerobic interface. Geomicrobiol 121:379-391
121. Roden EE, Urrutia MM (1999) Ferrous iron removal promotes microbial reduction of crystalline iron(III) oxides. Environ Sci Technol 33:2492-2492
122. Roden EE, Urrutia MM (2002) Influence of biogenic Fe(II) on bacterial crystalline Fe(III) oxide reduction. Geomicrobiol J 19:209-252
123. Roden EE, Urrutia MM, Mann CJ (2000) Bacterial reductive dissolution of crystalline Fe(III) oxide in continuous-flow column reactors. Appl Environ Microbiol 66:1062-1065
124. Roden EE, Zachara JM (1996) Microbial reduction of crystalline iron(III) oxides: influence of oxide surface area and potential for cell growth. Environ Sci Technol 30:1618-1628
125. Rooney-Varga JN, Anderson RT, Fraga JL, Ringelberg D, Lovley DR (1999) Microbial communities associated with anaerobic benzene degradation in a petroleum-contaminated aquifer. Appl Environ Microbiol 65: 3056-3063
126. Saffarini DA, Blumerman SL, Mansoorabadi KJ (2002) Role of menaquinones in Fe(III) reduction by membrane fractions of Shewanella putrefaciens. J Bacteriol 184:846-8
127. Saltikov CW, Cifuentes A, Venkateswaran K, Newman DK (2003) The ars detoxification system is advantageous but not required for As(V) respiration by the genetically tractable Shewanella species strain ANA-3. Appl Environ Microbiol 69:2800-2809
128. Schwalb C, Chapman SK, Reid GA (2003) The tetraheme cytochrome CymA is required for anaerobic respiration with dimethyl sulfoxide and nitrite in Shewanella oneidensis. Biochemistry 42:9491-9497
129. Shyu JB, Lies DP, Newman DK (2002) Protective role of tolC in efflux of the electron shuttle anthraquinone-2,6-disulfonate. J Bacteriol 184:1806-10
130. Sobolev D, Roden EE (2002) Evidence for rapid microscale bacterial redox cycling of iron in circumneutral environments. Antonie Van Leeuwenhoek Int J Gen Molec Microbiol 81:587-597
131. Stumm W (1992) Chemistry of the Solid-Water Interface. Wiley Interscience, New York.
132. Suzuki Y, Kelly SD, Kemner KM, Banfield JF (2002) Radionuclide contamination - nanometer-size products of uranium bioreduction. Nature 419:134-134
133. Taillefert M, DiChristina TJ (2005) Submitted for review.
134. Taillefert M, Hover VC, Rozan TF, Theberge SM, Luther III GW (2002) The influence of sulfides on soluble organic-Fe(III) in anoxic sediment porewaters. Estuaries 25:1088-1096
135. Turick CE, Tisa LS, Caccavo F Jr. (2002) Melanin production and use as a soluble electron shuttle for Fe(III) oxide reduction and as a terminal electron acceptor by Shewanella algae BrY. Appl Environ Microbiol 68: 2436-44
136. Urrutia MM, Roden EE, Zachara JM (1999) Influence of aqueous and solid-phase Fe(II) complexants on microbial reduction of crystalline iron(III) oxides. Environ Sci Technol 33:4022-4028
137. Wade R, DiChristina TJ (2000) Isolation of U(VI) reduction-deficient mutants of Shewanella putrefaciens. FEMS Microbiol Lett 184:143-148
138. Whitaker RJ, Banfield JF (2005) Population dynamics through the lens of extreme environments. Rev Mineral Geochem 59:259-277
139. Wielinga B, Bostick B, Hansel CM, Rosenzweig RF, Fendorf S (2000) Inhibition of bacterially promoted uranium reduction: Ferric (hydr)oxides as competitive electron acceptors. Environ Sci Technol 34:2190-2195
140. Wielinga B, Mizuba MM, Hansel CM, Fendorf S (2001) Iron promoted reduction of chromate by dissimilatory iron-reducing bacteria. Environ Sci Technol 35:522-527
141. Wildung RE, Gorby YA, Krupka KM, Hess NJ, Li SW, Plymale AE, McKinley JP, Fredrickson JK (2000) Effect of electron donor and solution chemistry on products of dissimilatory reduction of technetium by Shewanella putrefaciens. Appl Environ Microbiol 66:2451-2460
142. Wildung RE, Li SW, Murray CJ, Krupka KM, Xie Y, Hess NJ, Roden EE (2004) Technetium reduction in sediments of a shallow aquifer exhibiting dissimilatory iron reduction potential. FEMS Microbiol Ecol 49:151-162
143. 3+ oxides in single phase suspensions and subsurface materials. Am Mineral 83:1426-1443
144. Zachara JM, Fredrickson JK, Smith SC, Gassman PL (2001) Solubilization of Fe(III) oxide-bound trace metals by a dissimilatory Fe(III) reducing bacterium. Geochim Cosmochim Acta 65:75-93
145. Zachara JM, Kukkadapu RK, Gassman PL, Dohnalkova A, Fredrickson JK, Anderson T (2004) Biogeochemical transformation of Fe minerals in a petroleum-contaminated aquifer. Geochim Cosmochim Acta 68:1791-1805
146. Zachara JM, Kukkadapu RK, Fredrickson JK, Gorby YA, Smith SC (2002) Biomineralization of poorly crystalline Fe(III) oxides by dissimilatory metal reducing bacteria. Geomicrobiol J 19:179-207