1H, 15N and 13C resonance assignments and monomeric structure of the amino-terminal extracellular domain of epithelial cadherin

Journal of Biomolecular NMR

Volumn 7, Issue 3, 1996, Pages 173-189

  Overduin, Michael ^a,d   Tong, Kit I ^a   Kay, Cyril M ^b   Ikura, Mitsuhiko ^a,c  

^a UNIVERSITY OF TORONTO   (Canada)

^b UNIVERSITY OF ALBERTA   (Canada)

^c UNIVERSITY OF TSUKUBA   (Japan)

^d UNIVERSITY OF COLORADO   (United States)

Author keywords

Cadherin; Cell adhesion; Multidimensional NMR; Quasi helix; Resonance assignment; Tertiary structure

Indexed keywords

CADHERIN; CARBON; HYDROGEN; NITROGEN;

AMINO ACID SEQUENCE; ANIMAL; ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; GENETICS; MOLECULAR GENETICS; MOUSE; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PROTEIN CONFORMATION; PROTEIN SECONDARY STRUCTURE; PROTEIN TERTIARY STRUCTURE;

AMINO ACID SEQUENCE; ANIMALS; CADHERINS; CARBON ISOTOPES; HYDROGEN; MAGNETIC RESONANCE SPECTROSCOPY; MICE; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MOLECULAR STRUCTURE; NITROGEN ISOTOPES; PROTEIN CONFORMATION; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY;

EID: 0030139283     PISSN: 09252738     EISSN: None     Source Type: Journal    
DOI: 10.1007/bf00202035     Document Type: Article

References (75)

1. Archer, S.J., Ikura, M., Sporn, M.B., Torchia, D.A. and Bax, A. (1991) J. Magn. Reson., 95, 636-641.
2. Babul, J. and Steelwagen, E. (1969) Anal. Biochem., 28, 216-221.
3. Barkhuijsen, H., De Beer, R., Bovee, W.M.M.J. and Van Ormondt, D. (1985) J. Magn. Reson., 61, 465-481.
4. Bax, A., Mehlkopf, A.F. and Smidt, J. (1979) J. Magn. Reson., 35, 167-169.
5. Bax, A., Clore, G.M. and Gronenborn, A.M. (1990) J. Magn. Reson., 88, 425-431.
6. Bax, A. and Pochapsky, S. (1992) J. Magn. Reson., 99, 638-643.
7. Birchmeier, W. (1995) Bioessays, 17, 97-99.
8. Blaschuk, O.W., Sullivan, R., David, S. and Pouliot, Y. (1990) Dev. Biol., 139, 227-229.
9. Bodenhausen, G. and Ruben, D.J. (1980) Chem. Phys. Lett., 69, 185-189.
10. Bork, P., Holm, L. and Sanders, C.J. (1994) J. Mol. Biol., 242, 309-320.
11. Braunschweiler, L. and Ernst, R.R. (1983) J. Magn. Reson., 53, 521-528.
12. Brooks, B.R., Bruccoleri, R.E., Olafson, B.D., States, D.J., Swaminathan, S. and Karplus, M. (1983) J. Comput. Chem., 4, 187-217.
13. Brünger, A.T. (1992) X-PLOR Manual, v. 3.1, Yale University Press, New Haven, CT.
14. Clore, G.M., Nilges, M., Sukumaran, D.K., Brünger, A.T., Karplus, M. and Gronenborn, A.M. (1986) EMBO J., 5, 2729-2735.
15. Delaglio, F. (1993) NMRPipe System of Software, National Institutes of Health, Bethesda, MD.
16. Farmer, B.T., Venters, R.A., Spicer, L.D., Wittekind, M.G. and Müller, L. (1992) J. Biomol. NMR, 2, 195-202.
17. Garrett, D.S., Powers, R., Gronenborn, A.M. and Clore, G.M. (1991) J. Magn. Reson., 95, 214-220.
18. Grzesiek, S. and Bax, A. (1992) J. Magn. Reson., 96, 432-440.
19. Grzesiek, S., Anglister, J. and Bax, A. (1993) J. Magn. Reson. Ser. B, 101, 114-119.
20. Ikura, M., Kay, L.E., Tschudin, R. and Bax, A. (1990) J. Magn. Reson., 86, 204-209.
21. Jeener, J., Meier, B.H., Bachmann, P. and Ernst, R.R. (1979) J. Chem. Phys., 71, 4546-4553.
22. Kabsch, W. and Sander, C. (1979) Biopolymers, 22, 2577-2637.
23. Kay, L.E. and Bax, A. (1990) J. Magn. Reson., 86, 110-126.
24. Kay, L.E., Ikura, M., Tschudin, R. and Bax, A. (1990) J. Magn. Reson., 89, 496-514.
25. Kay, L.E., Keifer, P. and Saarinen, T. (1992) J. Am. Chem. Soc., 114, 10663-10665.
26. Kay, L.E. (1993) J. Am. Chem. Soc., 115, 2055-2057.
27. Mareel, M., Bracke, M. and Van Roy, F. (1994) Mol. Biol. Rep., 19, 45-67.
28. Marion, D., Driscoll, P.C., Kay, L.E., Wingfield, P.T., Bax, A., Gronenborn, A.M. and Clore, G.M. (1989a) Biochemistry, 28, 6150-6156.
29. Marion, D., Ikura, M. and Bax, A. (1989b) J. Magn. Reson., 84, 425-430.
30. Marion, D., Kay, L.E., Sparks, S.W., Torchia, D.A. and Bax, A. (1989c) J. Am. Chem. Soc., 111, 1515-1517.
31. McCoy, M.A. and Mueller, L. (1992) J. Magn. Reson., 98, 674-679.
32. Morris, A.L., MacArthur, M.W., Hutchinson, E.G. and Thornton, J.M. (1992) Proteins, 12, 345-364.
33. Muhandiram, D.R., Farrow, N.A., Xu, G.-Y., Smallcombe, S.H. and Kay, L.E. (1993) J. Magn. Reson. Ser. B, 102, 317-321.
34. Nagafuchi, A., Shirayoshi, Y., Okazaki, K., Yasuda, K. and Takeichi, M. (1987) Nature, 329, 341-343.
35. Nagafuchi, A. and Takeichi, M. (1988) EMBO J., 7, 3679-3684.
36. Nagar, B., Overduin, M., Ikura, M. and Rini, J. (1996) Nature, 380, 360-364.
37. Nilges, M., Gronenborn, A.M., Brünger, A.T. and Clore, G.M. (1988) Protein Eng., 2, 27-38.
38. Nilges, M., Kuszewski, J.T. and Brünger, A.T. (1991) In Computational Aspects of the Study of Biological Macromolecules by Nuclear Magnetic Resonance Spectroscopy (Eds, Hoch, J.C., Poulsen, F.M. and Redfield, C.), Plenum Press, New York, NY, pp. 451-455.
39. Nose, A., Tsuji, K. and Takeichi, M. (1990) Cell, 61, 147-155.
40. Oda, T., Kanai, Y., Oyama, T., Yoshiura, K., Shimoyama, Y., Birchmeier, W., Sugimura, T. and Hirohashi, S. (1994) Proc. Natl. Acad. Sci. USA, 91, 1858-1862.
41. Overduin, M., Harvey, T.S., Bagby, S., Tong, K.I., Yau, P., Takeichi, M. and Ikura, M. (1995) Science, 267, 386-389.
42. Ozawa, M. and Kemler, R. (1990) J. Cell Biol., 111, 1645-1650.
43. Ozawa, M., Engel, J. and Kemler, R. (1990a) Cell, 63, 1033-1038.
44. Ozawa, M., Hoschutzky, H., Herrenknecht, K. and Kemler, R. (1990b) Mech. Dev., 33, 49-56.
45. Ozawa, M., Ringwald, M. and Kemler, R. (1990c) Proc. Natl. Acad. Sci. USA, 87, 4246-4250.
46. Palmer, A.G., Fairbrother, W.J., Cavanagh, J., Wright, P.E. and Rance, M. (1992) J. Biomol. NMR, 2, 103-108.
47. Pascal, S., Muhandiram, T., Yamazaki, T., Forman-Kay, J.D. and Kay, L.E. (1994) J. Magn. Reson. Ser. B, 101, 197-201.
48. Powers, R., Gronenborn, A.M., Clore, G.M. and Bax, A. (1991) J. Magn. Reson., 94, 209-213.
49. Powers, R., Garrett, D.S., March, C.J., Frieden, E.A., Gronenborn, A.M. and Clore, G.M. (1993) Biochemistry, 32, 6744-6762.
50. Rance, M., Wagner, G., Sørensen, O.W, Wüthrich, K. and Ernst, R.R. (1984) J. Magn. Reson., 59, 250-261.
51. Redfield, C. and Dobson, C.M. (1990) Biochemistry, 29, 7201-7214.
52. Richardson, J. (1977) Nature, 268, 495-500.
53. Ringwald, M., Schuh, R., Vestweber, D., Eistetter, H., Lottspeich, F., Engel, J., Dolz, R., Jahnig, F., Epplen, J., Mayer, S., Müller, C. and Kemler, R. (1987) EMBO J., 6, 3647-3653.
54. Risinger, J.I., Berchuck, A., Kohler, M.F. and Boyd, J. (1994) Nat. Genet., 7, 98-102.
55. Scanlon, M.J. and Norton, R.S. (1994) Protein Sci., 3, 1121-1124.
56. Shaka, A.J., Keeler, J., Frenkiel, T. and Freeman, R. (1983) J. Magn. Reson., 52, 335-338.
57. Shaka, A.J., Lee, C.J. and Pines, A. (1988) J. Magn. Reson., 77, 274-293.
58. Shapiro, L., Fannon, A.M., Kwong, P.D., Thompson, A., Lehmann, M.S., Grubel, G., Legrand, J.F., Als-Nielsen, J., Colman, D.R. and Hendrickson, W.A. (1995a) Nature, 374, 327-337.
59. Shapiro, L., Kwong, P.D., Fannon, A.M., Colman, D.R. and Hendrickson, W.A. (1995b) Proc. Natl. Acad. Sci. USA, 92, 6793-6797.
60. Smith, L.J., Sutcliffe, M.J., Redfield, C. and Dobson, C.M. (1991) Biochemistry, 30, 986-996.
61. Spera, S. and Bax, A. (1991) J. Am. Chem. Soc., 113, 5490-5492.
62. Takeichi, M. (1990) Annu. Rev. Biochem., 59, 237-252.
63. Takeichi, M. (1991) Science, 251, 1451-1455.
64. Tong, K.I., Yau, P., Overduin, M., Bagby, S., Porumb, T., Takeichi, M. and Ikura, M. (1994) FEBS Lett., 352, 318-322.
65. Vuister, G.W. and Bax, A. (1992) J. Magn. Reson., 98, 428-435.
66. Wagner, G., Braun, W., Havel, T.F., Schaumann, T., Gō, N. and Wüthrich, K. (1987) J. Mol. Biol., 196, 611-639.
67. Williamson, M.P., Havel, T.F. and Wüthrich, K. (1985) J. Mol. Biol., 182, 295-315.
68. Wishart, D.S., Sykes, B.D. and Richards, F.M. (1991) J. Mol. Biol., 222, 311-333.
69. Wishart, D.S. and Sykes, B.D. (1994) Methods Enzymol., 239, 363-392.
70. Wittekind, M. and Mueller, L. (1993) J. Magn. Reson., 101, 201-205.
71. Wüthrich, K. (1986) NMR of Proteins and Nucleic Acids, Wiley, New York, NY.
72. Wyatt, P.J. (1993) Anal. Chim. Acta, 272, 1-40.
73. Yamazaki, T., Forman-Kay, J.D. and Kay, L.E. (1993) J. Am. Chem. Soc., 115, 11054-11055.
74. Zuiderweg, E.R.P., Boelens, R. and Kaptein, R. (1985) Biopolymers, 24, 601-610.
75. Zuiderweg, E.R.P. and Fesik, S.W. (1989) Biochemistry, 28, 2387-2391.