메뉴 건너뛰기




Volumn 29, Issue 4, 2005, Pages 353-364

Multilocus LD measure and tagging SNP selection with generalized mutual information

Author keywords

Haplotype diversity; Kullbak Leibler distance; Multilocus linkage disequilibrium; Relative information; Stepwise selection algorithm; Tagging SNP

Indexed keywords

ALGORITHM; ARTICLE; ENTROPY; GENE LINKAGE DISEQUILIBRIUM; GENE LOCUS; GENE MAPPING; GENETIC LINKAGE; GENETIC SELECTION; GENETIC VARIABILITY; SIMULATION; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 28344432987     PISSN: 07410395     EISSN: None     Source Type: Journal    
DOI: 10.1002/gepi.20092     Document Type: Article
Times cited : (54)

References (22)
  • 6
    • 0347362608 scopus 로고    scopus 로고
    • Principal component analysis for selection of optimal SNP-sets that capture intragenic genetic variation
    • Home BD, Camp NJ. 2004. Principal component analysis for selection of optimal SNP-sets that capture intragenic genetic variation. Genet Epidemiol 26:11-21.
    • (2004) Genet Epidemiol , vol.26 , pp. 11-21
    • Home, B.D.1    Camp, N.J.2
  • 7
    • 0036184745 scopus 로고    scopus 로고
    • Generating samples under a Wright-Fisher neutral model of genetic variation
    • Hudson RR. 2002. Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics 18:337-338.
    • (2002) Bioinformatics , vol.18 , pp. 337-338
    • Hudson, R.R.1
  • 8
    • 0347361674 scopus 로고    scopus 로고
    • Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data
    • Li N, Stephens M. 2003. Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data. Genetics 165:2213-2233.
    • (2003) Genetics , vol.165 , pp. 2213-2233
    • Li, N.1    Stephens, M.2
  • 9
    • 6344233909 scopus 로고    scopus 로고
    • Finding haplotype tagging SNPs by use of principal components analysis
    • Lin Z, Altman RB. 2004. Finding haplotype tagging SNPs by use of principal components analysis. Am J Hum Genet 75:850-861.
    • (2004) Am J Hum Genet , vol.75 , pp. 850-861
    • Lin, Z.1    Altman, R.B.2
  • 11
    • 0038728035 scopus 로고    scopus 로고
    • Selection of genetic markers for association analyses, using linkage disequilibrium and haplotypes
    • Meng Z, Zaykin DV, Xu CF, Wagner M, Ehm MG. 2003. Selection of genetic markers for association analyses, using linkage disequilibrium and haplotypes. Am J Hum Genet 73:115-130.
    • (2003) Am J Hum Genet , vol.73 , pp. 115-130
    • Meng, Z.1    Zaykin, D.V.2    Xu, C.F.3    Wagner, M.4    Ehm, M.G.5
  • 13
    • 0038315436 scopus 로고    scopus 로고
    • Entropy as a measure for linkage disequilibrium over multilocus haplotype blocks
    • Nothnagel M, Frst R, Rohde K. 2002. Entropy as a measure for linkage disequilibrium over multilocus haplotype blocks. Hum Hered 54:186-198.
    • (2002) Hum Hered , vol.54 , pp. 186-198
    • Nothnagel, M.1    Frst, R.2    Rohde, K.3
  • 14
    • 0034977045 scopus 로고    scopus 로고
    • Linkage disequilibrium in humans: Models and data
    • Pritchard JK, Przeworski M. 2001. Linkage disequilibrium in humans: models and data. Am J Hum Genet 69:1-14.
    • (2001) Am J Hum Genet , vol.69 , pp. 1-14
    • Pritchard, J.K.1    Przeworski, M.2
  • 17
    • 0036240964 scopus 로고    scopus 로고
    • Homozygosity and linkage disequilibrium
    • Sabatti C, Risch N. 2002. Homozygosity and linkage disequilibrium. Genet 160:1707-1719.
    • (2002) Genet , vol.160 , pp. 1707-1719
    • Sabatti, C.1    Risch, N.2
  • 18
    • 10044244767 scopus 로고    scopus 로고
    • Genetic epidemiology and haplotypes
    • Schaid DJ. 2004. Genetic epidemiology and haplotypes. Genet Epidemiol 27:317-320.
    • (2004) Genet Epidemiol , vol.27 , pp. 317-320
    • Schaid, D.J.1
  • 19
    • 0043175289 scopus 로고    scopus 로고
    • Choosing haplotype-tagging SNPS based on unphased genotype data using a preliminary sample of unrelated subjects with an example from the Multiethnic Cohort Study
    • Stram DO, Haiman CA, Hirschhorn JN, Altshuler D, Kolonel LN, Henderson BE, Pike MC. 2003. Choosing haplotype-tagging SNPS based on unphased genotype data using a preliminary sample of unrelated subjects with an example from the Multiethnic Cohort Study. Hum Hered 55:27-36.
    • (2003) Hum Hered , vol.55 , pp. 27-36
    • Stram, D.O.1    Haiman, C.A.2    Hirschhorn, J.N.3    Altshuler, D.4    Kolonel, L.N.5    Henderson, B.E.6    Pike, M.C.7
  • 21
    • 0042387804 scopus 로고    scopus 로고
    • Selection and evaluation of tagging SNPs in the neuronal-sodium-channel gene SCN1A: Implications for linkage-disequilibrium gene mapping
    • Weale ME, Depondt C, Macdonald SJ, Smith A, Lai PS, Shorvon SD, Wood NW, Goldstein DB. 2003. Selection and evaluation of tagging SNPs in the neuronal-sodium-channel gene SCN1A: implications for linkage-disequilibrium gene mapping. Am J Hum Genet 73:551-565.
    • (2003) Am J Hum Genet , vol.73 , pp. 551-565
    • Weale, M.E.1    Depondt, C.2    Macdonald, S.J.3    Smith, A.4    Lai, P.S.5    Shorvon, S.D.6    Wood, N.W.7    Goldstein, D.B.8
  • 22
    • 0003752712 scopus 로고    scopus 로고
    • Sunderland, MA: Sinauer Associates, Inc.
    • Weir B. 1996. Genetic data analysis II. Sunderland, MA: Sinauer Associates, Inc.
    • (1996) Genetic Data Analysis II
    • Weir, B.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.