Resolution of the structure of the allergenic and antifungal banana fruit thaumatin-like protein at 1.7-Å

Biochimie

Volumn 88, Issue 1, 2006, Pages 45-52

  Leone, Philippe ^a   Menu Bouaouiche, Laurence ^b   Peumans, Willy J ^c   Payan, Françoise ^a   Barre, Annick ^b   Roussel, Alain ^a   Van Damme, Els J M ^c   Rougé, Pierre ^b  

^a CNRS   (France)

^b Centre National de la Recherche Scientifique   (France)

^c GHENT UNIVERSITY   (Belgium)

Author keywords

Allergen; Antifungal protein; Banana; IgE binding epitope; PR 5 protein; Thaumatin like protein

Indexed keywords

ALLERGEN; EPITOPE; IMMUNOGLOBULIN E; THAUMATIN; THAUMATIN LIKE PROTEIN; UNCLASSIFIED DRUG;

ALLERGENICITY; ANTIFUNGAL ACTIVITY; ARTICLE; BANANA; CROSS REACTION; FRUIT; POLLEN; PROTEIN FOLDING; PROTEIN STRUCTURE; STRUCTURE ANALYSIS; X RAY CRYSTALLOGRAPHY;

ALLERGENS; AMINO ACID SEQUENCE; ANTIFUNGAL AGENTS; CRYSTALLIZATION; CRYSTALLOGRAPHY, X-RAY; EPITOPES; IMMUNOGLOBULIN E; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PLANT PROTEINS; SEQUENCE ALIGNMENT;

MUSA ACUMINATA;

EID: 27944481376     PISSN: 03009084     EISSN: 61831638     Source Type: Journal    
DOI: 10.1016/j.biochi.2005.07.001     Document Type: Article

References (54)

1. B. Knox, and C. Suphioglu Environmental and molecular biology of pollen allergens Trends Plant Sci. 1 1996 156 164
2. J.D. Astwood, J.N. Leach, and R.L. Fuchs Stability of food allergens to digestion in vitro Nat. Biotechnol. 14 1996 1269 1273
3. P.Z. Amlot, D.M. Kemeny, C. Zachary, P. Parkes, and M.H. Lessof Oral allergy syndrome (OAS) symptoms of IgE mediated hypersensitivity to foods Clin. Allergy 17 1987 33 42
4. S. Wagner, and H. Breiteneder The latex-fruit syndrome Biochem. Soc. Trans. 30 2002 935 940
5. B. Fritig, T. Heitz, and M. Legrand Antimicrobial proteins in induced plant defense Curr. Opin. Immunol. 10 1998 16 22
6. H. Breiteneder, and C. Ebner Molecular and biochemical classification of plant derived food allergens J. Allergy Clin. Immunol. 106 2000 27 36
7. R. Sanchez-Monge, C. Blanco, A. Diaz-Perales, C. Collada, T. Carrillo, C. Aragoncillo, and G. Salcedo Isolation and characterization of major banana allergens: identification as fruit class I chitinases Clin. Exp. Allergy 29 1999 673 680
8. W.J. Peumans, P. Proost, R.L. Swennen, and E.J.M. Van Damme The abundant class III chitinase homolog in young developing banana fruits behaves as a transient vegetative storage protein and most probably serves as an important supply of amino acids for the synthesis of ripening-associated proteins Plant Physiol. 130 2002 1063 1072
9. W.J. Peumans, A. Barre, V. Derycke, P. Rouǵ, W. Zhang, G.D. May, J.A. Delcour, F. Van Leuven, and E.J.M. Van Damme Purification, characterization and structural analysis of an abundant β-1,3-glucanase from banana fruit Eur. J. Biochem. 267 2000 1188 1195
10. A. Barre, W.J. Peumans, L. Menu-Bouaouiche, E.J.M. Van Damme, G.D. May, A.F. Herrera, F. Van Leuven, and P. Rouǵ Purification and structural analysis of an abundant thaumatin-like protein from ripe banana fruit Planta 211 2000 791 799
11. M. Krebitz, B. Wagner, F. Ferreira, C. Peterbauer, N. Campillo, M. Witty, D. Kolarich, H. Steinkellner, O. Scheiner, and H. Breiteneder Plant-based heterologous expression of Mal d 2, a thaumatin-like protein and allergen of apple (Malus domestica), and its characterization as an antifungal protein J. Mol. Biol. 329 2003 721 730
12. C. Inschlag, K. Hoffmann-Sommergruber, G. O'Riordain, H. Ahorn, C. Ebner, O. Scheiner, and H. Breiteneder Biochemical characterization of Pru a 2, a 23:kDa thaumatin-like protein representing a potential major allergen in cherry (Prunus avium) Int. Arch. Allergy Immunol. 116 1998 22 28
13. A. Leitner, E. Jensen-Jarolim, R. Grimm, B. Wuthrich, H. Ebner, O. Scheiner, D. Kraft, and C. Ebner Allergens in pepper and paprika. Immunologic investigation of the celery-birch-mugwort-spice syndrome Allergy 53 1998 36 41
14. E.A. Pastorello, L. Farioli, V. Pravettoni, C. Ortolani, D. Fortunato, M.G. Giuffrida, L.P. Garoffo, A.M. Calamari, O. Brenna, and A. Conti Identification of grape and wine allergens as an endochitinase 4, a lipid-transfer protein, and a thaumatin J. Allergy Clin. Immunol. 111 2003 350 359
15. H. Breiteneder Thaumatin-lke proteins - a new family of pollen and fruit allergens Allergy 59 2004 479 481
16. T. Midoro-Horiuti, R.M. Goldblum, A. Kurosky, T.G. Wood, and E.G. Brooks Variable expression of pathogenesis-related protein allergen in mountain cedar (Juniperus ashei) pollen J. Immunol. 164 2000 2188 2192
17. K.V. Soman, T. Midoro-Horiuti, J.C. Ferreon, R.M. Goldblum, E.G. Brooks, A. Kurosky, W. Braun, and C.H. Schein Homology modeling and characterization of IgE binding epitopes of mountain Cedar allergen Jun a 3 Biophys. J. 79 2000 1601 1609
18. A.J. Vigers, S. Wiedemann, W.K. Roberts, M. Legrand, C.P. Selitrennikoff, and B. Fritig A new family of plant antifungal proteins Mol. Plant Microbe Interact. 4 1991 315 323
19. E.J.M. Van Damme, D. Charels, P. Menu-Bouaouiche, A. Proost, P. Barre, W.J. Rouǵ, and Peumans Biochemical, molecular and structural analysis of multiple thaumatin-like proteins from the elderberry tree (Sambucus nigra L.) Planta 214 2001 853862
20. L. Menu-Bouaouiche, C. Vriet, W.J. Peumans, A. Barre, E.J.M. Van Damme, and P. Rouǵ A molecular basis for the endo-β1,3-glucanase activity of the thaumatin-like proteins from edible fruits Biochimie 85 2003 123 131
21. Z. Otwinowski, and W. Minor Processing of X-ray diffraction data collected in oscillation mode Methods Enzymol. 276A 1997 307326
22. J. Navaza AMoRe: an automated package for molecular replacement Acta Crystallogr. A50 1994 157 163
23. A.A. Vagin, and E.J. Dodson Refinement of macromolecular structures by the maximum-likelihood method Acta Crystallogr. D53 1997 240 255
24. A. Roussel, and C. Cambillau The TURBO-FRODO graphics package Silicon Graphics Geometry Partners Directory 81 1991 Silicon Graphics Corp
25. G.N. Ramachandran, and V. Sasisekharan Conformation of polypeptides and proteins Adv. Protein Chem. 23 1968 283 438
26. P.J. Kraulis Molscript: a program to produce both detailed and schematic plots of protein structures J. Appl. Crystallogr. 24 1991 946 950
27. R.M. Esnouf An extensively modified version of Molscript that includes greatly enhanced coloring capabilities J. Mol. Graph. 15 1997 132 134
28. E.A. Merritt, and D.J. Bacon Raster3D photorealistic molecular graphics Methods Enzymol. 277 1997 505 524
29. P.J. Goodford A computational procedure for determining energetically favourable binding sites on biologically important macromolecules J. Med. Chem. 28 1985 849 857
30. a values of ionizable groups in bacteriorhodopsin J. Mol. Biol. 224 1992 473 486
31. A. Nicholls, and B. Honig A rapid finite difference algorithm, utilizing successive over-relaxation to solve the Poisson-Boltzman equation J. Comp. Chem. 12 1991 435 445
32. A. Nicholls, K.A. Sharp, and B. Honig Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons Proteins Struc. Func. Genet. 11 1991 281 296
33. J. Kyte, and R.F. Doolittle A simple method for displaying the hydropathic character of a protein J. Mol. Biol. 157 1982 105 132
34. P.A. Karplus, and G.E. Schulz Prediction of chain flexibility in proteins Naturwis. 72 1985 212 213
35. B. Lee, and F.M. Richards The interpretation of protein structures: estimation of static accessibility J. Mol. Biol. 55 1971 379 400
36. T.P. Hopp, and K.R. Woods Prediction of protein antigenic determinants from amino acid sequences Proc. Natl. Acad. Sci. USA 78 1981 3824 3828
37. C.M. Ogata, P.F. Gordon, A.M. de Vos, and S.H. Kim Crystal structure of a sweet tasting protein thaumatin I, at 1.65 Å resolution J. Mol. Biol. 228 1992 893 908
38. M.A. Batalia, A.F. Monzingo, S. Ernst, and J.D. Robertus The crystal structure of the antifungal protein zeamatin, a member of the thaumatin-like, PR-5 protein family Nat. Struct. Biol. 3 1996 19 23
39. H. Koiwa, H. Kato, T. Nakatsu, J. Oda, Y. Yamada, and F. Sato Crystal structure of tobacco PR-5d protein at 1.8 Å resolution reveals a conserved acidic cleft structure in antifungal thaumatin-like proteins J. Mol. Biol. 286 1999 1137 1145
40. K. Min, S.C. Ha, P.M. Hasegawa, R.A. Bressan, D.-J. Yun, and K.K. Kim Crystal structure of osmotin, a plant antifungal protein Proteins Struct. Func. Bioinformatics 54 2004 170 173
41. R. Kaneko, and N. Kitabatake Structure-sweetness relationship in thaumatin: importance of lysine residues Chem. Senses 26 2001 167 177
42. J. Trudel, J. Grenier, C. Potvin, and A. Asselin Several thaumatin-like proteins bind to beta-1,3-glucans Plant Physiol. 118 1998 1431 1438
43. J. Grenier, C. Potvin, J. Trudel, and A. Asselin Some thaumatin-like proteins hydrolyse polymeric β-1,3-glucans Plant J. 19 1999 473 480
44. K. Hoffmann-Sommergruber Plant allergens and pathogenesis-related proteins Int. Arch. Allergy Immunol. 122 2000 155 166
45. P.S. Papageorgiou Clinical aspects of food allergy Biochem. Soc. Trans. 30 2002 901906
46. J.D. Higginbotham, D.J. Snodin, K.K. Eaton, and J.W. Daniel Safety evaluation of thaumatin (Talin protein) Food Chem. Toxicol. 21 1983 815 823
47. K. Hoffmann-Sommergruber, G. O'Riordain, H. Ahorn, C. Ebner, M. Laimer Da Camara Machado, H. Purhinger, O. Scheiner, and H. Breiteneder Molecular characterization of Dau c 1, the Bet v 1 homologous protein from carrot and its crossreactivity with Bet v 1 and Api g 1 Clin. Exp. Allergy 29 1999 840 847
48. R. Fritsch, B.B. Vollmann, U. Wiedermann, B. Jahn-Schmid, M. Krebitz, H. Breiteneder, D. Fraft, and C. Ebner Bet v 1, the major birch pollen allergen, and Mal d 1, the major apple allergen, cross-react at the level of allergen-specific T helper cells J. Allergy Clin. Immunol. 102 1998 679 686
49. L. Kazemi-Shirazi, G. Pauli, A. Purohit, S. Spitzauer, R. Froschl, K. Hoffmann-Sommergruber, H. Breiteneder, O. Scheiner, D. Kraft, and R. Valenta Quantitative IgE inhibition experiments with purified recombinant allergens indicate pollen-derived allergens as the sensitizing agents responsible for many forms of plant food allergy J. Allergy Clin. Immunol. 105 2000 116 125
50. R. Hiller Microarrayed allergen molecules: diagnostic gatekeepers for allergy treatment FASEB J. 16 2002 414 416
51. F. Ferreira, M. Wallner, H. Breiteneder, A. Hartl, J. Thalhamer, and C. Ebner Genetic engineering of allergens: future therapeutic products Int. Arch. Allergy Immunol. 128 2002 171 178
52. J.D. Thompson, T.J. Gibson, F. Plewniak, F. Jeanmougin, and D.G. Higgins The CLUSTALX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tool Nucleic Acids Res. 15 1997 4876 4882
53. P. Gouet, E. Courcelle, D.I. Stuart, and F. Metoz ESPript: analysis of multiple sequence alignments in PostScript Bioinformatics 15 1999 305 308
54. J.L. Risler, M.O. Delorme, H. Delacroix, and A. Henaut Amino acid substitutions in structurally related proteins. A pattern recognition approach. Determination of a new and efficient scoring matrix J. Mol. Biol. 204 1988 1019 1029