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Volumn 37, Issue 4, 2005, Pages 345-359

Detection and measurement of alternative splicing using splicing-sensitive microarrays

(16) Srinivasan, Karpagam a Shiue, Lily a Hayes, Justin D a Centers, Ross a Fitzwater, Sean a Loewen, Rebecca a Edmondson, Lillian R a Bryant, Jessica a Smith, Michael a Rommelfanger, Claire a Welch, Valerie a Clark, Tyson A a Sugnet, Charles W b Howe, Kenneth J a Mandel Gutfreund, Yael a Ares Jr , Manuel a

a UNIVERSITY OF CALIFORNIA (United States)

b University of California Santa Cruz (United States)

Author keywords

Alternative splicing; Cancer; Gene annotation; Microarrays; Oligonucleotides

Indexed keywords

OLIGONUCLEOTIDE; RNA;

ALTERNATIVE RNA SPLICING; ARTICLE; CANCER CELL CULTURE; DNA MICROARRAY; FUNGAL GENETICS; INTRON; NONHUMAN; PRIORITY JOURNAL; YEAST;

ALTERNATIVE SPLICING; AMINO ACID SEQUENCE; DYNAMIN II; GENE EXPRESSION PROFILING; GENOME, HUMAN; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; MODELS, BIOLOGICAL; MOLECULAR SEQUENCE DATA; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; RNA SPLICE SITES; SENSITIVITY AND SPECIFICITY; SEQUENCE HOMOLOGY, NUCLEIC ACID;

METAZOA; VERTEBRATA;

EID: 27944446829 PISSN: 10462023 EISSN: 10959130 Source Type: Journal
DOI: 10.1016/j.ymeth.2005.09.007 Document Type: Article

Times cited : (90)

References (43)

1
- 0036337915
- B. Modrek, and C. Lee Nat. Genet. 30 2002 13 19
- (2002) Nat. Genet. , vol.30 , pp. 13-19
- Modrek, B.¹ Lee, C.²

2
- 0034256020
- C.W. Smith, and J. Valcarcel Trends Biochem. Sci. 25 2000 381 388
- (2000) Trends Biochem. Sci. , vol.25 , pp. 381-388
- Smith, C.W.¹ Valcarcel, J.²

3
- 0013394889
- D.L. Black Annu. Rev. Biochem. 72 2003 291 336
- (2003) Annu. Rev. Biochem. , vol.72 , pp. 291-336
- Black, D.L.¹

4
- 1242325944
- D.L. Black, and P.J. Grabowski Prog. Mol. Subcell. Biol. 31 2003 187 216
- (2003) Prog. Mol. Subcell. Biol. , vol.31 , pp. 187-216
- Black, D.L.¹ Grabowski, P.J.²

5
- 0037443035
- N.A. Faustino, and T.A. Cooper Genes Dev. 17 2003 419 437
- (2003) Genes Dev. , vol.17 , pp. 419-437
- Faustino, N.A.¹ Cooper, T.A.²

6
- 0034906754
- P.J. Grabowski, and D.L. Black Prog. Neurobiol. 65 2001 289 308
- (2001) Prog. Neurobiol. , vol.65 , pp. 289-308
- Grabowski, P.J.¹ Black, D.L.²

7
- 20644435808
- R.P. Auburn, D.P. Kreil, L.A. Meadows, B. Fischer, S.S. Matilla, and S. Russell Trends Biotechnol. 23 2005 374 379
- (2005) Trends Biotechnol. , vol.23 , pp. 374-379
- Auburn, R.P.¹ Kreil, D.P.² Meadows, L.A.³ Fischer, B.⁴ Matilla, S.S.⁵ Russell, S.⁶

8
- 22944439400
- L. Qin, L. Rueda, A. Ali, and A. Ngom Appl. Bioinformatics 4 2005 1 11
- (2005) Appl. Bioinformatics , vol.4 , pp. 1-11
- Qin, L.¹ Rueda, L.² Ali, A.³ Ngom, A.⁴

9
- 24644482686
- G. Sherlock, and C.A. Ball Mol. Biotechnol. 30 2005 239 252
- (2005) Mol. Biotechnol. , vol.30 , pp. 239-252
- Sherlock, G.¹ Ball, C.A.²

10
- 20144379765
- T. Burckin, R. Nagel, Y. Mandel-Gutfreund, L. Shiue, T.A. Clark, J.L. Chong, T.H. Chang, S. Squazzo, G. Hartzog, and M. Ares Jr. Nat. Struct. Mol. Biol. 12 2005 175 182
- (2005) Nat. Struct. Mol. Biol. , vol.12 , pp. 175-182
- Burckin, T.¹ Nagel, R.² Mandel-Gutfreund, Y.³ Shiue, L.⁴ Clark, T.A.⁵ Chong, J.L.⁶ Chang, T.H.⁷ Squazzo, S.⁸ Hartzog, G.⁹ Ares Jr., M.¹⁰

11
- 0037012922
- T.A. Clark, C.W. Sugnet, and M. Ares Jr. Science 296 2002 907 910
- (2002) Science , vol.296 , pp. 907-910
- Clark, T.A.¹ Sugnet, C.W.² Ares Jr., M.³

12
- 27944504390
- J. Ule, A. Ule, J. Spencer, A. Williams, J.S. Hu, M. Cline, H. Wang, T. Clark, C. Fraser, M. Ruggiu, B.R. Zeeberg, D. Kane, J.N. Weinstein, J. Blume, and R.B. Darnell Nat. Genet. 2005
- (2005) Nat. Genet.
- Ule, J.¹ Ule, A.² Spencer, J.³ Williams, A.⁴ Hu, J.S.⁵ Cline, M.⁶ Wang, H.⁷ Clark, T.⁸ Fraser, C.⁹ Ruggiu, M.¹⁰ Zeeberg, B.R.¹¹ Kane, D.¹² Weinstein, J.N.¹³ Blume, J.¹⁴ Darnell, R.B.¹⁵

13
- 0242700119
- H. Wang, E. Hubbell, J.S. Hu, G. Mei, M. Cline, G. Lu, T. Clark, M.A. Siani-Rose, M. Ares, D.C. Kulp, and D. Haussler Bioinformatics 19 Suppl. 1 2003 i315 i322
- (2003) Bioinformatics , vol.19 , Issue.1 SUPPL.
- Wang, H.¹ Hubbell, E.² Hu, J.S.³ Mei, G.⁴ Cline, M.⁵ Lu, G.⁶ Clark, T.⁷ Siani-Rose, M.A.⁸ Ares, M.⁹ Kulp, D.C.¹⁰ Haussler, D.¹¹

14
- 19944365069
- Q. Pan, O. Shai, C. Misquitta, W. Zhang, A.L. Saltzman, N. Mohammad, T. Babak, H. Siu, T.R. Hughes, Q.D. Morris, B.J. Frey, and B.J. Blencowe Mol. Cell 16 2004 929 941
- (2004) Mol. Cell , vol.16 , pp. 929-941
- Pan, Q.¹ Shai, O.² Misquitta, C.³ Zhang, W.⁴ Saltzman, A.L.⁵ Mohammad, N.⁶ Babak, T.⁷ Siu, H.⁸ Hughes, T.R.⁹ Morris, Q.D.¹⁰ Frey, B.J.¹¹ Blencowe, B.J.¹²

15
- 22344458119
- M. Blanchette, R.E. Green, S.E. Brenner, and D.C. Rio Genes Dev. 19 2005 1306 1314
- (2005) Genes Dev. , vol.19 , pp. 1306-1314
- Blanchette, M.¹ Green, R.E.² Brenner, S.E.³ Rio, D.C.⁴

16
- 0347691435
- J. Castle, P. Garrett-Engele, C.D. Armour, S.J. Duenwald, P.M. Loerch, M.R. Meyer, E.E. Schadt, R. Stoughton, M.L. Parrish, D.D. Shoemaker, and J.M. Johnson Genome Biol. 4 2003 R66
- (2003) Genome Biol. , vol.4 , pp. 66
- Castle, J.¹ Garrett-Engele, P.² Armour, C.D.³ Duenwald, S.J.⁴ Loerch, P.M.⁵ Meyer, M.R.⁶ Schadt, E.E.⁷ Stoughton, R.⁸ Parrish, M.L.⁹ Shoemaker, D.D.¹⁰ Johnson, J.M.¹¹

17
- 0347623371
- J.M. Johnson, J. Castle, P. Garrett-Engele, Z. Kan, P.M. Loerch, C.D. Armour, R. Santos, E.E. Schadt, R. Stoughton, and D.D. Shoemaker Science 302 2003 2141 2144
- (2003) Science , vol.302 , pp. 2141-2144
- Johnson, J.M.¹ Castle, J.² Garrett-Engele, P.³ Kan, Z.⁴ Loerch, P.M.⁵ Armour, C.D.⁶ Santos, R.⁷ Schadt, E.E.⁸ Stoughton, R.⁹ Shoemaker, D.D.¹⁰

18
- 16544378889
- K. Le, K. Mitsouras, M. Roy, Q. Wang, Q. Xu, S.F. Nelson, and C. Lee Nucleic Acids Res. 32 2004 e180
- (2004) Nucleic Acids Res. , vol.32 , pp. 180
- Le, K.¹ Mitsouras, K.² Roy, M.³ Wang, Q.⁴ Xu, Q.⁵ Nelson, S.F.⁶ Lee, C.⁷

19
- 0036215612
- J.M. Yeakley, J.B. Fan, D. Doucet, L. Luo, E. Wickham, Z. Ye, M.S. Chee, and X.D. Fu Nat. Biotechnol. 20 2002 353 358
- (2002) Nat. Biotechnol. , vol.20 , pp. 353-358
- Yeakley, J.M.¹ Fan, J.B.² Doucet, D.³ Luo, L.⁴ Wickham, E.⁵ Ye, Z.⁶ Chee, M.S.⁷ Fu, X.D.⁸

20
- 0035393343
- B. Modrek, A. Resch, C. Grasso, and C. Lee Nucleic. Acids. Res. 29 2001 2850 2859
- (2001) Nucleic. Acids. Res. , vol.29 , pp. 2850-2859
- Modrek, B.¹ Resch, A.² Grasso, C.³ Lee, C.⁴

21
- 0345865005
- T.A. Thanaraj, S. Stamm, F. Clark, J.J. Riethoven, V. Le Texier, J. Muilu, Nucleic Acids Res. 32, Database issue (2004) D64-D69.
- (2004) Nucleic Acids Res. , vol.32 , Issue.DATABASE ISSUE
- Thanaraj, T.A.¹ Stamm, S.² Clark, F.³ Riethoven, J.J.⁴ Le Texier, V.⁵ Muilu, J.⁶

22
- 2442709350
- C. Grasso, B. Modrek, Y. Xing, and C. Lee Pac. Symp. Biocomput. 2004 29 41
- (2004) Pac. Symp. Biocomput. , pp. 29-41
- Grasso, C.¹ Modrek, B.² Xing, Y.³ Lee, C.⁴

23
- 2442694425
- C.W. Sugnet, W.J. Kent, M. Ares Jr., and D. Haussler Pac. Symp. Biocomput. 2004 66 77
- (2004) Pac. Symp. Biocomput. , pp. 66-77
- Sugnet, C.W.¹ Kent, W.J.² Ares Jr., M.³ Haussler, D.⁴

24
- 0038486897
- R. Sorek, and G. Ast Genome Res. 13 2003 1631 1637
- (2003) Genome Res. , vol.13 , pp. 1631-1637
- Sorek, R.¹ Ast, G.²

25
- 17844407888
- N. Kim, S. Shin, and S. Lee Genome Res. 15 2005 566 576
- (2005) Genome Res. , vol.15 , pp. 566-576
- Kim, N.¹ Shin, S.² Lee, S.³

26
- 17444424989
- K. Malde, E. Coward, and I. Jonassen Bioinformatics 21 2005 1371 1375
- (2005) Bioinformatics , vol.21 , pp. 1371-1375
- Malde, K.¹ Coward, E.² Jonassen, I.³

27
- 1542316923
- Y. Xing, A. Resch, and C. Lee Genome Res. 14 2004 426 441
- (2004) Genome Res. , vol.14 , pp. 426-441
- Xing, Y.¹ Resch, A.² Lee, C.³

28
- 0013159620
- S. Heber, M. Alekseyev, S.H. Sze, H. Tang, and P.A. Pevzner Bioinformatics 18 Suppl. 1 2002 S181 S188
- (2002) Bioinformatics , vol.18 , Issue.1 SUPPL.
- Heber, S.¹ Alekseyev, M.² Sze, S.H.³ Tang, H.⁴ Pevzner, P.A.⁵

29
- 0036203448
- C. Lee, C. Grasso, and M.F. Sharlow Bioinformatics 18 2002 452 464
- (2002) Bioinformatics , vol.18 , pp. 452-464
- Lee, C.¹ Grasso, C.² Sharlow, M.F.³

30
- 0034655641
- C.A. Davis, L. Grate, M. Spingola, and M. Ares Jr. Nucleic Acids Res. 28 2000 1700 1706
- (2000) Nucleic Acids Res. , vol.28 , pp. 1700-1706
- Davis, C.A.¹ Grate, L.² Spingola, M.³ Ares Jr., M.⁴

31
- 0033034668
- M. Spingola, L. Grate, D. Haussler, and M. Ares Jr. RNA 5 1999 221 234
- (1999) RNA , vol.5 , pp. 221-234
- Spingola, M.¹ Grate, L.² Haussler, D.³ Ares Jr., M.⁴

32
- 0035865260
- D.D. Shoemaker, E.E. Schadt, C.D. Armour, Y.D. He, P. Garrett-Engele, P.D. McDonagh, P.M. Loerch, A. Leonardson, P.Y. Lum, G. Cavet, L.F. Wu, S.J. Altschuler, S. Edwards, J. King, J.S. Tsang, G. Schimmack, J.M. Schelter, J. Koch, M. Ziman, M.J. Marton, B. Li, P. Cundiff, T. Ward, J. Castle, M. Krolewski, M.R. Meyer, M. Mao, J. Burchard, M.J. Kidd, H. Dai, J.W. Phillips, P.S. Linsley, R. Stoughton, S. Scherer, and M.S. Boguski Nature 409 2001 922 927
- (2001) Nature , vol.409 , pp. 922-927
- Shoemaker, D.D.¹ Schadt, E.E.² Armour, C.D.³ He, Y.D.⁴ Garrett-Engele, P.⁵ McDonagh, P.D.⁶ Loerch, P.M.⁷ Leonardson, A.⁸ Lum, P.Y.⁹ Cavet, G.¹⁰ Wu, L.F.¹¹ Altschuler, S.J.¹² Edwards, S.¹³ King, J.¹⁴ Tsang, J.S.¹⁵ Schimmack, G.¹⁶ Schelter, J.M.¹⁷ Koch, J.¹⁸ Ziman, M.¹⁹ Marton, M.J.²⁰ more..

33
- 17444407072
- E.K. Nordberg Bioinformatics 21 2005 1365 1370
- (2005) Bioinformatics , vol.21 , pp. 1365-1370
- Nordberg, E.K.¹

34
- 0036615598
- A. Relogio, C. Schwager, A. Richter, W. Ansorge, and J. Valcarcel Nucleic Acids Res. 30 2002 e51
- (2002) Nucleic Acids Res. , vol.30 , pp. 51
- Relogio, A.¹ Schwager, C.² Richter, A.³ Ansorge, W.⁴ Valcarcel, J.⁵

35
- 0036208669
- J.M. Rouillard, C.J. Herbert, and M. Zuker Bioinformatics 18 2002 486 487
- (2002) Bioinformatics , vol.18 , pp. 486-487
- Rouillard, J.M.¹ Herbert, C.J.² Zuker, M.³

36
- 84984934354
- E. Southern, K. Mir, and M. Shchepinov Nat. Genet. 21 1999 5 9
- (1999) Nat. Genet. , vol.21 , pp. 5-9
- Southern, E.¹ Mir, K.² Shchepinov, M.³

37
- 0346430525
- R.J. Britten, and E.H. Davidson Proc. Natl. Acad. Sci. USA 73 1976 415 419
- (1976) Proc. Natl. Acad. Sci. USA , vol.73 , pp. 415-419
- Britten, R.J.¹ Davidson, E.H.²

38
- 0029968822
- J. SantaLucia Jr, H.T. Allawi, and P.A. Seneviratne Biochemistry 35 1996 3555 3562
- (1996) Biochemistry , vol.35 , pp. 3555-3562
- SantaLucia Jr., J.¹ Allawi, H.T.² Seneviratne, P.A.³

39
- 0001550068
- K.J. Breslauer, R. Frank, H. Blocker, and L.A. Marky Proc. Natl. Acad. Sci. USA 83 1986 3746 3750
- (1986) Proc. Natl. Acad. Sci. USA , vol.83 , pp. 3746-3750
- Breslauer, K.J.¹ Frank, R.² Blocker, H.³ Marky, L.A.⁴

40
- 0041305816
- K.J. Howe, C.M. Kane, and M. Ares Jr RNA 9 2003 993 1006
- (2003) RNA , vol.9 , pp. 993-1006
- Howe, K.J.¹ Kane, C.M.² Ares Jr., M.³

41
- 0035931072
- L.L. Hsiao, F. Dangond, T. Yoshida, R. Hong, R.V. Jensen, J. Misra, W. Dillon, K.F. Lee, K.E. Clark, P. Haverty, Z. Weng, G.L. Mutter, M.P. Frosch, M.E. Macdonald, E.L. Milford, C.P. Crum, R. Bueno, R.E. Pratt, M. Mahadevappa, J.A. Warrington, G. Stephanopoulos, and S.R. Gullans Physiol. Genomics 7 2001 97 104
- (2001) Physiol. Genomics , vol.7 , pp. 97-104
- Hsiao, L.L.¹ Dangond, F.² Yoshida, T.³ Hong, R.⁴ Jensen, R.V.⁵ Misra, J.⁶ Dillon, W.⁷ Lee, K.F.⁸ Clark, K.E.⁹ Haverty, P.¹⁰ Weng, Z.¹¹ Mutter, G.L.¹² Frosch, M.P.¹³ MacDonald, M.E.¹⁴ Milford, E.L.¹⁵ Crum, C.P.¹⁶ Bueno, R.¹⁷ Pratt, R.E.¹⁸ Mahadevappa, M.¹⁹ Warrington, J.A.²⁰ more..

42
- 0034720002
- J.A. Warrington, A. Nair, M. Mahadevappa, and M. Tsyganskaya Physiol. Genomics 2 2000 143 147
- (2000) Physiol. Genomics , vol.2 , pp. 143-147
- Warrington, J.A.¹ Nair, A.² Mahadevappa, M.³ Tsyganskaya, M.⁴

43
- 28744458859
- R.C. Gentleman, V.J. Carey, D.M. Bates, B. Bolstad, M. Dettling, S. Dudoit, B. Ellis, L. Gautier, Y. Ge, J. Gentry, K. Hornik, T. Hothorn, W. Huber, S. Iacus, R. Irizarry, F. Leisch, C. Li, M. Maechler, A.J. Rossini, G. Sawitzki, C. Smith, G. Smyth, L. Tierney, J.Y. Yang, and J. Zhang Genome Biol. 5 2004 R80
- (2004) Genome Biol. , vol.5 , pp. 80
- Gentleman, R.C.¹ Carey, V.J.² Bates, D.M.³ Bolstad, B.⁴ Dettling, M.⁵ Dudoit, S.⁶ Ellis, B.⁷ Gautier, L.⁸ Ge, Y.⁹ Gentry, J.¹⁰ Hornik, K.¹¹ Hothorn, T.¹² Huber, W.¹³ Iacus, S.¹⁴ Irizarry, R.¹⁵ Leisch, F.¹⁶ Li, C.¹⁷ Maechler, M.¹⁸ Rossini, A.J.¹⁹ Sawitzki, G.²⁰ more..

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