-
1
-
-
0025183708
-
Basic local alignment tool
-
Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipmann. 1990. Basic local alignment tool. J. Mol. Biol. 215: 403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipmann, D.J.5
-
2
-
-
13344256568
-
The relationship between cell size and viability of soil bacteria
-
Bakken, L. R. and R. A. Olsen. 1987. The relationship between cell size and viability of soil bacteria. Microb. Ecol. 13: 103-114.
-
(1987)
Microb. Ecol.
, vol.13
, pp. 103-114
-
-
Bakken, L.R.1
Olsen, R.A.2
-
3
-
-
0001444368
-
Deep-aquifer microorganisms
-
D. P. Labeda (ed.), McGraw-Hill Publ. Co., New York, U.S.A
-
Balkwill, D. L. 1990. Deep-aquifer microorganisms, pp. 183-211. In D. P. Labeda (ed.), Isolation of Biotechnological Organisms from Nature. McGraw-Hill Publ. Co., New York, U.S.A.
-
(1990)
Isolation of Biotechnological Organisms from Nature
, pp. 183-211
-
-
Balkwill, D.L.1
-
4
-
-
0031864898
-
Determinants of soil microbial communities: Effects of agricultural management, season and soil type on phospholipid fatty acid profiles
-
Bosio, D. A., K. M. Scow, N. Gunapala, and K. J. Graham. 1998. Determinants of soil microbial communities: Effects of agricultural management, season and soil type on phospholipid fatty acid profiles. Microb. Ecol. 36: 1-12.
-
(1998)
Microb. Ecol.
, vol.36
, pp. 1-12
-
-
Bosio, D.A.1
Scow, K.M.2
Gunapala, N.3
Graham, K.J.4
-
5
-
-
3242811275
-
Molecular differentiation of Bacillus spp. antagonistic against phytopathogenic fungi causing damping-off disease
-
Cho. M. J., Y. K. Kim, and J. O. Ka. 2004. Molecular differentiation of Bacillus spp. antagonistic against phytopathogenic fungi causing damping-off disease. J. Microbiol. Biotechnol. 14(3): 599-606.
-
(2004)
J. Microbiol. Biotechnol.
, vol.14
, Issue.3
, pp. 599-606
-
-
Cho, M.J.1
Kim, Y.K.2
Ka, J.O.3
-
6
-
-
0026723774
-
Use of repetitive (repetitive extragenic palindromic and enterobacterial repetitive intergeneric consensus) sequences and the polymerase chain reaction to fingerprint the genomes of Rhizobium meliloti isolates and other soil bacteria
-
de Bruijn, F. J. 1992. Use of repetitive (repetitive extragenic palindromic and enterobacterial repetitive intergeneric consensus) sequences and the polymerase chain reaction to fingerprint the genomes of Rhizobium meliloti isolates and other soil bacteria. Appl. Environ. Microbiol. 58: 2180-2187.
-
(1992)
Appl. Environ. Microbiol.
, vol.58
, pp. 2180-2187
-
-
de Bruijn, F.J.1
-
7
-
-
0031909733
-
Phylogeny of the main bacterial 16S rRNA sequences in Drentse A grassland soils (The Netherlands)
-
Felske, A., A. Wolterink, R. V. Lis, and A. D. L. Akkermans. 1998. Phylogeny of the main bacterial 16S rRNA sequences in Drentse A grassland soils (The Netherlands). Appl. Environ. Microbiol. 64: 871-879.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 871-879
-
-
Felske, A.1
Wolterink, A.2
Lis, R.V.3
Akkermans, A.D.L.4
-
8
-
-
0021314270
-
Response of marine bacterioplankton to differential filtration and confinement
-
Ferguson, R. L., E. N. Buckley, and A. V. Palumbo. 1984. Response of marine bacterioplankton to differential filtration and confinement. Appl. Environ. Microbiol. 47: 49-55.
-
(1984)
Appl. Environ. Microbiol.
, vol.47
, pp. 49-55
-
-
Ferguson, R.L.1
Buckley, E.N.2
Palumbo, A.V.3
-
9
-
-
0030063913
-
Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community
-
Ferris, M. J., G. Muyzer, and D. M. Ward. 1996. Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community. Appl. Environ. Microbiol. 62: 340-346.
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 340-346
-
-
Ferris, M.J.1
Muyzer, G.2
Ward, D.M.3
-
10
-
-
0032824027
-
Assessment of bacterial community structure in soil by polymerase chain reaction and denaturing gradient gel electrophoresis
-
Gelsomino, A., A. C. Keijzer-Wolters, G. Cacco, and J. D. van Elsas. 1999. Assessment of bacterial community structure in soil by polymerase chain reaction and denaturing gradient gel electrophoresis. J. Microbiol. Methods 38: 1-15.
-
(1999)
J. Microbiol. Methods
, vol.38
, pp. 1-15
-
-
Gelsomino, A.1
Keijzer-Wolters, A.C.2
Cacco, G.3
van Elsas, J.D.4
-
11
-
-
2542508293
-
Diversity and structure of the methanogenic community in anoxic rice paddy soil microcosms as examined by cultivation and direct 16S rRNA gene sequence retrieval
-
Grobkopf, R., P. H. Janssen, and W. Liesack. 1998. Diversity and structure of the methanogenic community in anoxic rice paddy soil microcosms as examined by cultivation and direct 16S rRNA gene sequence retrieval. Appl. Environ. Microbiol. 64: 960-969.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 960-969
-
-
Grobkopf, R.1
Janssen, P.H.2
Liesack, W.3
-
12
-
-
0040336333
-
Novel euryarchaeotal lineages detected on rice roots and in the anoxic bulk soil of flooded rice microcosms
-
Grobkopf, R., S. Stubner, and W. Liesack. 1998. Novel euryarchaeotal lineages detected on rice roots and in the anoxic bulk soil of flooded rice microcosms. Appl. Environ. Microbiol. 64: 4983-4989.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 4983-4989
-
-
Grobkopf, R.1
Stubner, S.2
Liesack, W.3
-
13
-
-
0030771747
-
Advances in soil microbial ecology and the biodiversity
-
Hattori, T., H. Mitsui, H. Haga, N. Wakao, S. Shikano, K. Gorlach, Y. Kasahara, A. El-Beltagy, and R. Hattori. 1997. Advances in soil microbial ecology and the biodiversity. Antonie van Leeuwenhoek 72: 21-28.
-
(1997)
Antonie Van Leeuwenhoek
, vol.72
, pp. 21-28
-
-
Hattori, T.1
Mitsui, H.2
Haga, H.3
Wakao, N.4
Shikano, S.5
Gorlach, K.6
Kasahara, Y.7
El-Beltagy, A.8
Hattori, R.9
-
14
-
-
0032705563
-
Comparative phylogenetic assignment of environmental sequences of genes encoding 16S rRNA and numerically abundant culturable bacteria from an anoxic rice paddy soil
-
Hengstmann, U., K.-J. Chin, P. H. Janssen, and W. Liesack. 1999. Comparative phylogenetic assignment of environmental sequences of genes encoding 16S rRNA and numerically abundant culturable bacteria from an anoxic rice paddy soil. Appl. Environ. Microbiol. 65: 5050-5058.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 5050-5058
-
-
Hengstmann, U.1
Chin, K.-J.2
Janssen, P.H.3
Liesack, W.4
-
15
-
-
0031662188
-
Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
-
Hugenholtz, P., B. M. Goebel, and N. R. Pace. 1998. Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J. Bacteriol. 180: 4765-4774.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 4765-4774
-
-
Hugenholtz, P.1
Goebel, B.M.2
Pace, N.R.3
-
16
-
-
18144384255
-
Analysis of plasmid pJP4 horizontal transfer and its impact on bacterial community structure in natural soil
-
Kim, T. S., M. S. Kim, M. K. Jung, J. H. Ahn, M. J. Joe, K. H. Oh, M. H. Lee, M. K. Kim, and J. O. Ka. 2005. Analysis of plasmid pJP4 horizontal transfer and its impact on bacterial community structure in natural soil. J. Microbiol. Biotechnol. 15(2): 376-383.
-
(2005)
J. Microbiol. Biotechnol.
, vol.15
, Issue.2
, pp. 376-383
-
-
Kim, T.S.1
Kim, M.S.2
Jung, M.K.3
Ahn, J.H.4
Joe, M.J.5
Oh, K.H.6
Lee, M.H.7
Kim, M.K.8
Ka, J.O.9
-
17
-
-
3242805209
-
Investigation of possible gene transfer to soil microorganisms for environmental risk assessment of genetically modified organisms
-
Kim, Y. T., B. K. Park, E. I. Hwang, N. H. Yim, N. R. Kim, T. H. Kang, S. H. Lee, and S. U. Kim. 2004. Investigation of possible gene transfer to soil microorganisms for environmental risk assessment of genetically modified organisms. J. Microbiol. Biotechnol. 14(3): 498-502.
-
(2004)
J. Microbiol. Biotechnol.
, vol.14
, Issue.3
, pp. 498-502
-
-
Kim, Y.T.1
Park, B.K.2
Hwang, E.I.3
Yim, N.H.4
Kim, N.R.5
Kang, T.H.6
Lee, S.H.7
Kim, S.U.8
-
18
-
-
0001857117
-
16S/23S rRNA sequencing
-
E. Stackebrandt and M. Goodfellow (eds.), John Wiley and Sons, Chichester, England
-
Lane, D. J. 1991. 16S/23S rRNA sequencing, pp. 115-148. In E. Stackebrandt and M. Goodfellow (eds.), Nucleic Acid Techniques in Bacterial Systematics. John Wiley and Sons, Chichester, England.
-
(1991)
Nucleic Acid Techniques in Bacterial Systematics
, pp. 115-148
-
-
Lane, D.J.1
-
19
-
-
0030763934
-
Detection and in situ identification of representatives of a widely distributed new bacterial phylum
-
Ludwig, W., S. H. Bauer, I. Held, G. Kirchhof, R. Schulze, I. Huber, S. Spring, A. Hartmann, and K.-H. Schleifer. 1997. Detection and in situ identification of representatives of a widely distributed new bacterial phylum. FEMS Microbiol. Lett. 153: 181-190.
-
(1997)
FEMS Microbiol. Lett.
, vol.153
, pp. 181-190
-
-
Ludwig, W.1
Bauer, S.H.2
Held, I.3
Kirchhof, G.4
Schulze, R.5
Huber, I.6
Spring, S.7
Hartmann, A.8
Schleifer, K.-H.9
-
20
-
-
0033933786
-
Archacal population dynamics during sequential reduction processes in rice field soil
-
Lueders, T. and M. Friedrich. 2000. Archacal population dynamics during sequential reduction processes in rice field soil. Appl. Environ. Microbiol. 66: 2732-2742.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 2732-2742
-
-
Lueders, T.1
Friedrich, M.2
-
21
-
-
0032772104
-
Microbial population changes during bioremediation of an experimental dil spill
-
MacNaughton, S. J., J. R. Stephen, A. D. Venosa, G. A. Davis, Y.-J. Chang, and D. C. White. 1999. Microbial population changes during bioremediation of an experimental dil spill. Appl. Environ. Microbiol. 65: 3566-3574.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 3566-3574
-
-
MacNaughton, S.J.1
Stephen, J.R.2
Venosa, A.D.3
Davis, G.A.4
Chang, Y.-J.5
White, D.C.6
-
22
-
-
0033954255
-
The RDP (Ribosomal Database Project) continues
-
Maidak, B. L., J. R. Cole, T. G. Lilburn, C. T. Parker Jr., P. R. Saxman, J. M. Stredwick, G. M. Garrity, B. Li, G. J. Olsen, S. Pramanik, T. M. Schmidt, and J. M. Tiedje. 2000. The RDP (Ribosomal Database Project) continues. Nucleic Acids Res. 28(1): 173-174.
-
(2000)
Nucleic Acids Res.
, vol.28
, Issue.1
, pp. 173-174
-
-
Maidak, B.L.1
Cole, J.R.2
Lilburn, T.G.3
Parker Jr., C.T.4
Saxman, P.R.5
Stredwick, J.M.6
Garrity, G.M.7
Li, B.8
Olsen, G.J.9
Pramanik, S.10
Schmidt, T.M.11
Tiedje, J.M.12
-
23
-
-
0028926678
-
Growth of Arthrobacter globiformis in soil observed by fluorescent antibody and ELISA techniques
-
Mansoor, E. Y. and T. R. G. Gray. 1995. Growth of Arthrobacter globiformis in soil observed by fluorescent antibody and ELISA techniques. Microbiology 141: 505-511.
-
(1995)
Microbiology
, vol.141
, pp. 505-511
-
-
Mansoor, E.Y.1
Gray, T.R.G.2
-
24
-
-
0032916067
-
Molecular analysis of bacterial community structure and diversity in unimproved and improved upland grass pastures
-
McCaig, A. E., L. A. Glover, and J. I. Prosser. 1999. Molecular analysis of bacterial community structure and diversity in unimproved and improved upland grass pastures. Appl. Environ. Microbiol. 65: 1721-1730.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 1721-1730
-
-
McCaig, A.E.1
Glover, L.A.2
Prosser, J.I.3
-
25
-
-
0031687533
-
Horizontal gene transfer from transgenic plants to terrestrial bacteria - A rare event?
-
Nielsen, K. M., A. M. Bones, K. Smalla, and J. D. van Elsas. 1998. Horizontal gene transfer from transgenic plants to terrestrial bacteria - a rare event? FEMS Microbiol. Rev. 22: 79-103.
-
(1998)
FEMS Microbiol. Rev.
, vol.22
, pp. 79-103
-
-
Nielsen, K.M.1
Bones, A.M.2
Smalla, K.3
van Elsas, J.D.4
-
26
-
-
0036947083
-
Soil microbial community structure across a thermal gradient following a geothermal heating event
-
Norris, T. B., J. M. Wraith, R. W. Castenholz, and T. R. McDermott. 2002. Soil microbial community structure across a thermal gradient following a geothermal heating event. Appl. Environ. Microbiol. 68: 6300-6309.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 6300-6309
-
-
Norris, T.B.1
Wraith, J.M.2
Castenholz, R.W.3
McDermott, T.R.4
-
27
-
-
0005609826
-
Response of soil microflora to high 2,4-D applications
-
Ou, L. T., J. M. Davidson, and D. F. Rothwell. 1978. Response of soil microflora to high 2,4-D applications. Soil Biol. Biochem. 10: 443-445.
-
(1978)
Soil Biol. Biochem.
, vol.10
, pp. 443-445
-
-
Ou, L.T.1
Davidson, J.M.2
Rothwell, D.F.3
-
28
-
-
0037687907
-
Isolation and characterization of 4-(2,4-dichlorophenoxy)butyric acid-degrading bacteria from agricultural soils
-
Park, I. H. and J. O. Ka. 2003. Isolation and characterization of 4-(2,4-dichlorophenoxy)butyric acid-degrading bacteria from agricultural soils. J. Microbiol. Biotechnol. 13(2): 243-250.
-
(2003)
J. Microbiol. Biotechnol.
, vol.13
, Issue.2
, pp. 243-250
-
-
Park, I.H.1
Ka, J.O.2
-
29
-
-
0030620302
-
Microbial communities of continuously cropped, irrigated rice fields
-
Reichardt, W., G. Mascarina, B. Padre, and J. Doll. 1997. Microbial communities of continuously cropped, irrigated rice fields. Appl. Environ. Microbiol. 63: 233-238.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 233-238
-
-
Reichardt, W.1
Mascarina, G.2
Padre, B.3
Doll, J.4
-
30
-
-
0027705710
-
Microbiological management of wetland rice fields
-
F. B. Metting, Jr. (ed.), Marcel Dekker, Inc., New York, U.S.A
-
Roger, P. A., W. J. Zimmerman, and T. A. Lumpkin. 1993. Microbiological management of wetland rice fields, pp. 417-455. In F. B. Metting, Jr. (ed.), Soil Microbial Ecology. Marcel Dekker, Inc., New York, U.S.A.
-
(1993)
Soil Microbial Ecology
, pp. 417-455
-
-
Roger, P.A.1
Zimmerman, W.J.2
Lumpkin, T.A.3
-
31
-
-
0033914285
-
Insecticidal toxin from Bacillus thuringiensis is released from roots of transgenic Bt corn in vitro and in situ
-
Saxena, A. D. and G. Stotzky. 2000. Insecticidal toxin from Bacillus thuringiensis is released from roots of transgenic Bt corn in vitro and in situ. FEMS Microbiol. Ecol. 33: 35-39.
-
(2000)
FEMS Microbiol. Ecol.
, vol.33
, pp. 35-39
-
-
Saxena, A.D.1
Stotzky, G.2
-
32
-
-
0035344248
-
Diversity and seasonal fluctuations of the dominant members of the bacterial soil community in a wheat field as determined by cultivation and molecular methods
-
Smit, E., P. Leefang, S. Gommans, and J. Van Den Broek. 2001. Diversity and seasonal fluctuations of the dominant members of the bacterial soil community in a wheat field as determined by cultivation and molecular methods. Appl. Environ. Microbiol. 67: 2284-2291.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 2284-2291
-
-
Smit, E.1
Leefang, P.2
Gommans, S.3
Van Den Broek, J.4
-
34
-
-
0004248459
-
-
version 4.0 Computer program distributed by Sinauer Associates, Sunderland, Massachusetts, U.S.A
-
Swofford, D. L. 2002. PAUP: Phylogenetic analysis using parsimony, version 4.0. Computer program distributed by Sinauer Associates, Sunderland, Massachusetts, U.S.A.
-
(2002)
PAUP: Phylogenetic Analysis Using Parsimony
-
-
Swofford, D.L.1
-
35
-
-
0027992990
-
Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction
-
Versalovic, J., M. Schneider, F. J. de Bruijn, and J. R. Lupski. 1994. Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction. Methods Mol. Cell Biol. 5: 25-40.
-
(1994)
Methods Mol. Cell Biol.
, vol.5
, pp. 25-40
-
-
Versalovic, J.1
Schneider, M.2
de Bruijn, F.J.3
Lupski, J.R.4
-
36
-
-
0008059931
-
Microbial ecology of flooded rice soils
-
Watanabe, I. and C. Furusaka. 1980. Microbial ecology of flooded rice soils. Adv. Microb. Ecol. 4: 125-168.
-
(1980)
Adv. Microb. Ecol.
, vol.4
, pp. 125-168
-
-
Watanabe, I.1
Furusaka, C.2
-
37
-
-
0003740557
-
-
Soil Science Society of America, Madison, U.S.A
-
Weaver, R. W., J. S. Angle, and P. S. Bottomley. 1999. Methods of Soil Analysis: Part 2 - Microbiological and Biochemical Properties. Soil Science Society of America, Madison, U.S.A.
-
(1999)
Methods of Soil Analysis: Part 2 - Microbiological and Biochemical Properties
-
-
Weaver, R.W.1
Angle, J.S.2
Bottomley, P.S.3
|