Analysis of plasmid pJP4 horizontal transfer and its impact on bacterial community structure in natural soil

Journal of Microbiology and Biotechnology

Volumn 15, Issue 2, 2005, Pages 376-383

  Kim, Taesung ^a,b   Kim, Mi Soon ^a   Jung, Mee Kum ^a   Joe, Min Jeong ^a   Ahn, Jae Hyung ^a   Oh, Kyoung Hee ^b   Lee, Minhyo ^b   Kim, Minkyun ^a   Ka, Jong Ok ^a  

^a Seoul National University   (South Korea)

^b National Institute of Environmental Research   (South Korea)

Author keywords

Bacterial community structure; Gene transfer; Plasmid pJP4

Indexed keywords

2,4 DICHLOROPHENOXYACETIC ACID; BACITRACIN; DNA 16S; KANAMYCIN; NALIDIXIC ACID; NEOMYCIN; POLYMYXIN B; RIFAMPICIN; RNA 16S; STREPTOMYCIN; TRIMETHOPRIM;

ALCALIGENES; ANTIBIOTIC RESISTANCE; ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIAL FLORA; BACTERIAL STRAIN; BACTERIUM CULTURE; BACTERIUM ISOLATION; BIOTECHNOLOGY; BURKHOLDERIA CEPACIA; COMMUNITY STRUCTURE; CULTURE MEDIUM; DENATURING GRADIENT GEL ELECTROPHORESIS; DNA DETERMINATION; DNA FINGERPRINTING; DNA SEQUENCE; GENOME ANALYSIS; HORIZONTAL GENE TRANSFER; MICROCOSM; NATIVE SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PLASMID; POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS; SOIL INOCULATION; SOIL MICROFLORA;

ALCALIGENES SP.; BACTERIA (MICROORGANISMS); BURKHOLDERIA; BURKHOLDERIA CEPACIA; PANDORAEA;

EID: 18144384255     PISSN: 10177825     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (32)

1. Bae, J. W., J. J. Kim, C. O. Jeon, K. Kim, J. J. Song, S. G. Lee, H. R. Poo, C. M. Jung, Y. H. Park, and M. H. Sung. 2003. Application of denaturing gradient gel electrophoresis to estimate the diversity of commensal thermophiles. J. Microbiol. Biotechnol. 13(6): 1008-1012.
2. Balkwill, D. L. 1990. Deep-aquifer microorganisms, pp. 183-211. In D. P. Labeda (ed.) Isolation of Biotechnological Organisms from Nature. McGraw-Hill Publ. Co., New York, U.S.A.
3. Biederbeck, V. O., C. A. Campbell, and A. E. Smith. 1987. Effects of long-term 2,4-D field applications on soil biochemical processes. J. Environ. Qual. 16: 257-262.
4. Cho. M. J., Y. K. Kim, and J. O. Ka. Molecular differentiation of Bacillus spp. antagonistic against phytopathogenic fungi causing damping-off disease. J. Microbiol. Biotechnol. 14(3): 599-606.
5. Daane, L. L., J. A. E. Molina, and M. J. Sadowsky. 1997. Plasmid transfer between spatially separated donor and recipient bacteria in earthworm-containing soil microcosms. Appl. Environ. Microbiol. 63: 679-686.
6. de Bruijn, F. J. 1992. Use of repetitive (repetitive extragenic palindromic and enterobacterial repetitive intergeneric consensus) sequences and the polymerase chain reaction to fingerprint the genomes of Rhizobium meliloti isolates and other soil bacteria. Appl. Environ. Microbiol. 58: 2180-2187.
7. Don, R. H. and J. M. Pemberton. 1981. Properties of six pesticide degradation plasmids isolated from Alcaligenes paradoxus and Alcaligenes eutrophus. J. Bacteriol. 145: 681-686.
8. Don, R. H. and J. M. Pemberton. 1985. Genetic and physical map of the 2,4-dichlorophenoxyacetic acid-degradative plasmid pJP4. J. Bacteriol. 161: 466-468.
9. Ferris, M. J., G. Muyzer, and D. M. Ward. 1996. Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community. Appl. Environ. Microbiol. 62: 340-346.
10. Foster, R. K. and R. B. Mckercher. 1973. Laboratory incubation studies of chlorophenoxyacetic acids in chemozemic soils. Soil Biol. Biochem. 5: 333-337.
11. Fournier, J. C. 1980. Enumeration of the soil microorganisms able to degrade 2,4-D by metabolism or co-metabolism. Chemosphere 9: 169-174.
12. Hong, S. M., Y. W. Lee, C. K. Kim, and J. O. Ka. 1996. Fate of genetically engineered 2,4-D-degading microorganisms in natural soils and waters. J. Microbiol. 34(4): 320-326.
13. Ka, J. O. and J. M. Tiedje. 1994. Integration and excision of a 2,4-dichlorophenoxyacetic acid-degradative plasmid in Alcaligenes paradux and evidence of its natural intergeneric transfer. J. Bacteriol. 176: 5284-5289.
14. Ka, J. O., W. E. Holben, and J. M. Tiedje. 1994. Use of gene probes to aid in recovery and identification of functionally dominant 2,4-dichlorophenoxyacetic acid-degrading populations in soil. Appl. Environ. Microbiol. 60: 1116-1120.
15. Kado, C. I. and S. T. Liu. 1981. Rapid procedure for detection and isolation of large and small plasmids. J. Bacteriol. 145: 1365-1373.
16. Kim, Y. T., B. K. Park, E. I. Hwang, N. H. Yim, N. R. Kim, T. H. Kang, S. H. Lee, and S. U. Kim. 2004. Investigation of possible gene transfer to soil microorganisms for environmental risk assessment of genetically modified organisms. J. Microbiol. Biotechnol. 14(3): 498-502.
17. Kunc, F. and J. Rybarova. 1893. Mineralization of carbon atoms of 14C-2,4-D side chain and degradation ability of bacteria in soil. Soil Biol. Biochem. 15: 141-144.
18. Lane, D. J. 1991. 16S/23S rRNA sequencing, pp. 115-148. In E. Stackebrandt and M. Goodfellow (eds.), Nucleic Acid Techniques in Bacterial Systematics. John Wiley and Sons, Chichester, England.
19. Loos, M. A., I. F. Schlosser, and W. R. Mapham. 1979. Phenoxy herbicide degradation in soils: Quantitative studies of 2,4-D- and MCPA-degrading microbial populations. Soil Biol. Biochem. 11: 377-385.
20. Maidak, B. L., J. R. Cole, T. G. Lilburn, C. T. Parker Jr, P. R. Saxman, J. M. Stredwick, G. M. Garrity, B. Li, G. J. Olsen, S. Pramanik, T. M. Schmidt, and J. M. Tiedje. 2000. The RDP (Ribosomal Database Project) continues. Nucleic Acids Res. 28(1): 173-174.
21. Neilson, J. W., K. L. Josephson, I. L. Pepper, R. G. Arnold, G. D. DiGiovanni, and N. A. Sinclair. 1994. Frequency of horizontal gene transfer of a large catabolic plasmid (pJP4) in soil. Appl. Environ. Microbiol. 60: 4053-4058.
22. Newby, D. T., T. J. Gentry, and I. L. Pepper. 2000. Comparison of 2,4-dichlorophenoxyacetic acid degradation and plasmid transfer in soil resulting from bioaugmentation with two different pJP4 donors. Appl. Environ. Microbiol. 66: 3399-3407.
23. Newby, D. T., K. L. Josephson, and I. L. Pepper. 2000. Detection and characterization of plasmid pJP4 transfer to indigenous soil bacteria. Appl. Environ. Microbiol. 66: 290-296.
24. Norris, T. B., J. M. Wraith, R. W. Castenholz, and T. R. McDermott. 2002. Soil microbial community structure across a thermal gradient following a geothermal heating event. Appl. Environ. Microbiol. 68: 6300-6309.
25. Ou, L. T. 1984. 2,4-D degradation and 2,4-D degrading microorganisms in soils. Soil Sci. 137: 100-107.
26. Ou, L. T., J. M. Davidson, and D. F. Rothwell. 1978. Response of soil microflora to high 2,4-D applications. Soil Biol. Biochem. 10: 443-445.
27. Park, I. H. and J. O. Ka. 2003. Isolation and characterization of 4-(2,4-dichlorophenoxy)butyric acid-degrading bacteria from agricultural soils. J. Microbiol. Biotechnol. 13: 243-250.
28. Ravel, J., E. M. H. Wellington, and R. T. Hill. 2000. Interspecific transfer of streptomyces giant plasmids in sterile amended soil microcosms. Appl. Environ. Microbiol. 66: 529-534.
29. Top, E. M., P. Van Daele, N. De Saeyer, and L. J. Forney. 1998. Enhancement of 2,4-dichlorophenoxyacetic acid (2,4-D) degradation in soil by dissemination of catabolic plasmids. Antonie Leeuwenhoek 73: 87-94.
30. Versalovic, J., M. Schneider, F. J. de Bruijn, and J. R. Lupski. 1994. Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction. Methods Mol. Cell Biol. 5: 25-40.
31. Weaver, R. W., J. S. Angle, and P. S. Bottomley. 1999. Methods of Soil Analysis: Part 2 - Microbiological and Biochemical Properties. Soil Science Society of America, Madison, U.S.A.
32. Yu, Z., V J. J. Martin, and W. W. Mohn. 1999. Occurrence of two resin acid-degrading bacteria and a gene encoding resin acid biodegradation in pulp and paper mill effluent biotreatment systems assayed by PCR. Microb. Ecol. 38: 114-125.