Electrostatics of Cytochrome-c assemblies

Journal of Molecular Modeling

Volumn 11, Issue 4-5, 2005, Pages 265-270

  Renugopalakrishnan, V ^a,b   Ortiz Lombardía, Miguel ^c   Verma, Chandra ^c,d  

^a The Department of Electrical and Computer Engineering   (United States)

^b BOSTON CHILDREN S HOSPITAL   (United States)

^c UNIVERSITY OF YORK   (United Kingdom)

^d BIOINFORMATICS INSTITUTE   (Singapore)

Author keywords

Assemblies; Bionanosensors; Cytochrome c; Poisson Boltzmann electrostatic surface

Indexed keywords

BIOMATERIAL; CYTOCHROME C; MUTANT PROTEIN; NANOPARTICLE;

ARTICLE; BIOSENSOR; CHEMICAL MUTAGENESIS; CONTROLLED STUDY; ELECTRIC FIELD; ELECTRIC POTENTIAL; PRIORITY JOURNAL; PROCESS DESIGN; PROTEIN ANALYSIS; PROTEIN ASSEMBLY; PROTEIN STRUCTURE; SOLUBILITY; WILD TYPE;

CYTOCHROMES C; ELECTRON TRANSPORT COMPLEX III; ELECTRON TRANSPORT COMPLEX IV; ELECTROSTATICS; MODELS, MOLECULAR; MUTAGENESIS, SITE-DIRECTED; PROTEIN CONFORMATION;

EID: 27844608951     PISSN: 16102940     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00894-005-0244-y     Document Type: Article

References (31)

1. Beratan DN, Onuchic JN, Winkler JR, Gray HB (1992) Science 258:1740-1741
2. Gray HB, Winkler JR (2003) Q Rev Biophys 36:341-372
3. Ren Y, Wang WH, Wang YH, Case M, Qian W, McLendon G, Huang ZX (2004) Biochemistry 43:3527-3536
4. Beratan DN, Betts JN, Onuchic JN (1991) Science 252:1285-1288
5. Flock D, Helms V (2004) Biophys J 87:65-74
6. de Rienzo F, Gabdoulline RR, Wade RC, Sola M, Menziani MC (2004) Cell Mol Life Sci 61:1123-1142
7. Karplus M (2003) Biopolymers 68:350-358
8. de Groot BL, Grubmuller H (2001) Science 294:2353-2357
9. Dvorsky R, Sevcik J, Caves LSD, Verma CS (2000) J Phys Chem B 104:10387-10397
10. Wackerbarth H, Hildebrandt P (2003) Chem Phys Chem 4:714-724
11. Miyashita O, Onuchic JN, Okamura MY (2003) Biochemistry 42:11651-11660
12. Lancaster R (2003) FEBS Lett 545:52-60
13. Honig B, Nicholls A (1995) Science 268:1144-1149
14. Bashford D (2004) Front Biosci 9:1082-1099
15. Antosiewicz J, McCammon JA, Gilson MK (1994) J Mol Biol 238:415-436
16. Zhang Q, Cao C, Wang ZQ, Wang YH, Wu H, Huang ZX (2004) Protein Sci 13:2161-2169
17. Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE (2000) Nucleic Acids Res 28:235-242
18. Luo Y, Bushnell GW, Louie GV, Brayer GD (1990) J Mol Biol 214:585-595
19. Klapper I, Hagstrom R, Fine R, Sharp K, Honig B (1986) Proteins 1:47-59
20. Sharp KA, Honig B (1990) Annu Rev Biophys Biophys Chem 19:301-332
21. Sanner MF, Olson AJ, Spehner JC (1996) Biopolymers 38:305-320
22. Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM, Meng EC, Ferrin TE (2004) J Comput Chem 25:1605-1612
23. Emsley P, Cowtan K (2004) Acta Crystall Sect D - Biol Crystallography (in press)
24. Lange C, Hunte C (2002) Proc Nat Acad Sci USA 99:2800-2805
25. Yoshikawa S, Shinzawa-Itoh K, Nakashima R, Yaono R, Yamashita E, Inoue N, Yao M, Fei MJ, Libeu CP, Mizushima T, Yamaguchi H, Tomizaki T, Tsukihara T (1998) Science 28:1723-1729
26. Gabdoulline RR, Wade RC (2001) J Mol Biol 306:1139-1155
27. Flock D, Helms V (2002) Proteins 47:75-85
28. Croney JC, Helms MK, Jameson DM, Larsen RW (2003) Biophys J 84:4135-4143 84:4135-4143
29. Pletneva EV, Crnogorac MM, Kostic NM (2002) J Am Chem Soc 124:14342-14354
30. Prabhakaran M, Gursahani SH, Verma CS, Garduno-Juarez R, Renugopalakrishnan V (2004) J Phys Chem Solids 65:1615-1622
31. Parrish JC, Guillemette JG, Wallace CJA (2001) Biochem Cell Biol 79:517-524