A molecular understanding of the catalytic cycle of the nucleotide-binding domain of the ABC transporter HlyB

Biochemical Society Transactions

Volumn 33, Issue 5, 2005, Pages 990-995

  Zaitseva, J ^a,c   Jenewein, S ^a,c   Oswald, C ^a,c   Jumpertz, T ^a,c   Holland, I B ^b   Schmitt, L ^a,c  

^a GOETHE UNIVERSITY   (Germany)

^b UNIVERSITÉ PARIS SACLAY   (France)

^c HEINRICH HEINE UNIVERSITY   (Germany)

Author keywords

ATP binding cassette transporter (ABC transporter); ATP hydrolysis; Haemolysin B (HlyB); Nucleotide binding domain; Substrate assisted catalysis; X ray structure

Indexed keywords

ABC TRANSPORTER; ADENOSINE TRIPHOSPHATE; HEMOLYSIN; HEMOLYSIN B; UNCLASSIFIED DRUG;

ARTICLE; CATALYSIS; CONFORMATIONAL TRANSITION; CRYSTAL STRUCTURE; ENERGY METABOLISM; ENERGY TRANSFER; HYDROLYSIS; MEMBRANE; MOLECULAR BIOLOGY; MOLECULAR DYNAMICS; MUTATIONAL ANALYSIS; NUCLEOTIDE BINDING SITE; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN DOMAIN; PROTEIN STRUCTURE; STRUCTURE ANALYSIS; TRANSPORT KINETICS;

ADENOSINE TRIPHOSPHATE; AMINO ACID SEQUENCE; BACTERIAL PROTEINS; BINDING SITES; BIOLOGICAL TRANSPORT; CARRIER PROTEINS; CATALYTIC DOMAIN; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; HEMOLYSIN PROTEINS; MODELS, MOLECULAR; NUCLEOTIDES; PROTEIN CONFORMATION; PROTEIN STRUCTURE, SECONDARY;

ESCHERICHIA COLI;

EID: 27844467773     PISSN: 03005127     EISSN: None     Source Type: Journal    
DOI: 10.1042/BST20050990     Document Type: Article

References (65)

1. Holland, I.B., Benabdelhak, H., Young, J., De Lima Pimenta, A., Schmitt, L. and Blight, MA (2003) in ABC Proteins: From Bacteria to Man (Holland, I.B., Cole, S.P., Kuchler, K. and Higgins, C., eds.), pp. 209-241, Academic Press, London
2. Delepelaire, P. (2004) Biochim. Biophys. Acta 1694, 149-161
3. Welch, R.A. and Pellet, S. (1985) J. Bacteriol. 170, 1622-1630
4. Blight, M.A. and Holland, LB. (1994) TIBTECH 12, 450-455
5. Welch, R.A. (1991) Mol. Microbiol. 5, 521-528
6. Baumann, U., Wu, S., Flaherty, K.M. and McKay, D.B. (1993) EMBO J. 12, 3 357-3364
7. Gray, L., Baker, K., Kenny, B., Mackman, N., Haigh, R. and Holland, I.B. (1989) J. Cell Sci. Suppl. 11, 45-57
8. Gray, L., Mackman, N., Nicaud, J.M. and Holland, I.B. (1986) Mol. Gen. Genet. 205, 127-133
9. Kenny, B., Chervaux, C. and Holland, I.B. (1994) Mol. Microbiol. 11, 99-109
10. Jarchau, T., Chakraborty, T., Garcia, F. and Goebel, W. (1994) Mol. Gen. Genet. 245, 53-60
11. Wolff, N., Delepelaire, P., Ghigo, J.M. and Delepierre, M. (1997) Eur. J. Biochem. 243, 400-407
12. Yin, Y., Zhang, F., Ling, V. and Arrowsmith, C.H. (1995) FEBS Lett. 366, 1-5
13. Driessen, A.J., Fekkes, P. and van der Wolk, J.P. (1998) Curr. Opin. Microbiol. 1, 216-222
14. Letoffe, S., Delepelaire, P. and Wandersman, C. (1996) EMBO J. 15, 5804-5811
15. Binet, R. and Wandersman, C. (1995) EMBO J. 14, 2298-2306
16. Mackman, N., Nicaud, J.M., Gray, L. and Holland, I.B. (1985) Mol. Gen. Genet. 201, 529-536
17. Mackman, N., Nicaud, J.M., Gray, L. and Holland, I.B. (1985) Mol. Gen. Genet. 201, 282-288
18. Holland, I.B., Schmitt, L. and Young, J. (2005) Mol. Membr. Biol. 22, 29-39
19. Koronakis, V., Sharff, A., Koronakis, E., Luisi, B. and Hughes, C. (2000) Nature (London) 405, 914-919
20. Koronakis, V., Eswaran, J. and Hughes, C. (2004) Annu. Rev. Biochem. 73, 467-489
21. Johnson, J.M. and Church, G.M. (1999) J. Mol. Biol. 287, 695-715
22. Schmitt, L. and Tampé, R. (2002) Curr. Opin. Struct. Biol. 12, 754-760
23. Thanabalu, T., Koronakis, E., Hughes, C. and Koronakis, V. (1998) EMBO J. 17, 6487-6496
24. Benabdelhak, H., Kiontke, S., Horn, C., Ernst, R., Blight, M.A., Holland, I.B. and Schmitt, L. (2003) J. Mol. Biol. 327, 1169-1179
25. Koronakis, V., Hughes, C. and Koronakis, E. (1991) EMBO J. 10, 3263-3272
26. Balakrishnan, L., Hughes, C. and Koronakis, V. (2001) J. Mol. Biol. 313, 501-510
27. Blight, M.A., Menichi, B. and Holland, I.B. (1995) Mol. Gen. Genet. 247, 73-85
28. Delepelaire, P. and Wandersman, C. (1998) EMBO J. 17, 936-944
29. Koronakis, E., Hughes, C., Milisav, I. and Koronakis, V. (1995) Mol. Microbiol. 16, 87-96
30. Higgins, C.F. (1992) Annu. Rev. Cell Biol. 8, 67-113
31. Hung, L.-W., Wang, I.X., Nikaido, K., Liu, P.-Q., Ferro-Luzzi Ames, G. and Kim, S.-H. (1998) Nature (London) 396, 703-707
32. Zaitseva, J., Jenewein, S., Jumpertz, T., Holland, I.B. and Schmitt, L. (2005) EMBO J. 24, 1901-1910
33. Yuan, Y.R., Blecker, S., Martsinkevich, O., Millen, L., Thomas, P.J. and Hunt, J.F. (2001) J. Biol. Chem. 276, 32313-32321
34. Verdon, G., Albers, S.V., Dijkstra, B.W., Driessen, A.J. and Thunnissen, A.M. (2003) J. Mol. Biol. 330, 343-358
35. Smith, P.C., Karpowich, N., Millen, L., Moody, J.E., Rosen, J., Thomas, P.J. and Hunt, J.F. (2002) Mol. Cell 10, 139-149
36. Karpowich, N., Martsinkevich, O., Millen, L., Yuan, Y.R., Dai, P.L., MacVey, K., Thomas, P.J. and Hunt, J.F. (2001) Structure 9, 571-586
37. Diederichs, K., Diez, J., Greller, G., Muller, C., Breed, J., Schnell, C., Vonrhein, C., Boos, W. and Welte, W. (2000) EMBO J. 19, 5951-5961
38. Gaudet, R. and Wiley, D.C. (2001) EMBO J. 20, 4964-4972
39. Schmitt, L., Benabdelhak, H., Blight, M.A., Holland, I.B. and Stubbs, M.T. (2003) J. Mol. Biol. 330, 333-342
40. Chang, G. and Roth, C.B. (2001) Science 293, 1793-1800
41. Locher, K.P., Lee, A.T. and Rees, D.C. (2002) Science 296, 1091-1098
42. Chang, G. (2003) J. Mol. Biol. 330, 419-430
43. Abrahams, J.P., Leslie, A.G., Lutter, R. and Walker, J.E. (1994) Nature (London) 370, 621-628
44. Walter, C., Wilken, S. and Schneider, E. (1992) FEBS Lett. 303, 41-44
45. Zaitseva, J., Jenewein, S., Wiedenmann, A., Holland, I.B. and Schmitt, L. (2005) Biochemistry 44, 9680-9690
46. Zaitseva, J., Holland, I.B. and Schmitt, L. (2004) Acta Crystallogr. D 60, 1076-1084
47. Koronakis, V., Hughes, C. and Koronakis, E. (1993) Mol. Microbiol. 8, 1163-1175
48. Benabdelhak, H., Schmitt, L., Horn, C., Jumel, K., Blight, M.A. and Holland, I.B. (2005) Biochem. J. 368, 1-7
49. Moody, J.E., Millen, L., Binns, D., Hunt, J.F. and Thomas, P.J. (2002) J. Biol. Chem. 277, 21111-21114
50. Orelle, C., Dalmas, O., Gros, P., Di Pietro, A. and Jault, J.M. (2003) J. Biol. Chem. 278, 47002-47008
51. Janas, E., Hofacker, M., Chen, M., Gompf, S., van der Does, C. and Tampe, R. (2003) J. Biol. Chem. 278, 26862-26869
52. Payen, L.F., Gao, M., Westlake, C.J., Cole, S.P. and Deeley, R.G. (2003) J. Biol. Chem. 278, 38537-38547
53. Verdon, G., Albers, S.V., van Oosterwijk, N., Dijkstra, B.W., Driessen, A.J. and Thunnissen, A.M. (2003) J. Mol. Biol. 334, 255-267
54. Tombline, G., Bartholomew, L.A., Tyndall, G.A., Gimi, K., Urbatsch, I.L. and Senior, A.E. (2004) J. Biol. Chem. 279, 46518-46526
55. Sauna, Z.E., Muller, M., Peng, X.H. and Ambudkar, S.V. (2002) Biochemistry 41, 13989-14000
56. Urbatsch, I.L., Julien, M., Carrier, I., Rousseau, M.E., Cayrol, R. and Gros, P. (2000) Biochemistry 39, 14138-14149
57. Shyamala, V., Baichwal, V., Beall, E. and Ames, G.F. (1991) J. Biol. Chem. 266, 18714-18719
58. Davidson, A.L. and Sharma, S. (1997) J. Bacteriol. 179, 5458-5464
59. Nikaido, K. and Ames, G.F. (1999) J. Biol. Chem. 274, 26727-26735
60. Chen, J., Lu, G., Lin, J., Davidson, A.L. and Quiocho, F.A. (2003) Mol. Cell 12, 651-661
61. Fersht, A. (1997) Enzyme, Structure and Mechanism, Freemann, New York
62. Schowen, K.B. and Schowen, R.L. (1982) Methods Enzymol. 87, 551-606
63. Dall'Acqua, W. and Carter, P. (2000) Protein Sci. 9, 1-9
64. Schweins, T., Geyer, M., Scheffzek, K., Warshel, A., Kalbitzer, H.R. and Wittinghofer, A. (1995) Nat. Struct. Biol. 2, 36-44
65. Jeltsch, A., Alves, J., Wolfes, H., Maass, G. and Pingoud, A. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 8499-8503