-
1
-
-
0033603539
-
Phylogenetic classification and the universal tree
-
Doolittle WF. Phylogenetic classification and the universal tree. Science 1999, 284: 2124-2129
-
(1999)
Science
, vol.284
, pp. 2124-2129
-
-
Doolittle, W.F.1
-
3
-
-
0242276676
-
Lateral gene transfer and the origins of prokaryotic groups
-
Boucher Y, Douady CJ, Papke RT, Walsh DA, Boudreau ME, Nesbo CL, Case RJ et al. Lateral gene transfer and the origins of prokaryotic groups. Annu Rev Genet 2003, 37: 283-328
-
(2003)
Annu Rev Genet
, vol.37
, pp. 283-328
-
-
Boucher, Y.1
Douady, C.J.2
Papke, R.T.3
Walsh, D.A.4
Boudreau, M.E.5
Nesbo, C.L.6
Case, R.J.7
-
4
-
-
3042849253
-
Biased biological functions of horizontally transferred genes in prokaryotic genomes
-
Nakamura Y, Itoh T, Matsuda H, Gojobori T. Biased biological functions of horizontally transferred genes in prokaryotic genomes. Nat Genet 2004, 36: 760-766
-
(2004)
Nat Genet
, vol.36
, pp. 760-766
-
-
Nakamura, Y.1
Itoh, T.2
Matsuda, H.3
Gojobori, T.4
-
5
-
-
0030994798
-
Amelioration of bacterial genomes: Rates of change and exchange
-
Lawrence JG, Ochman H. Amelioration of bacterial genomes: Rates of change and exchange. J Mol Evol 1997, 44: 383-397
-
(1997)
J Mol Evol
, vol.44
, pp. 383-397
-
-
Lawrence, J.G.1
Ochman, H.2
-
6
-
-
0038434059
-
Metabolites: A helping hand for pathway evolution?
-
Schmidt S, Sunyaev S, Bork P, Dandekar T. Metabolites: A helping hand for pathway evolution? Trends Biochem Sci 2003, 28: 336-341
-
(2003)
Trends Biochem Sci
, vol.28
, pp. 336-341
-
-
Schmidt, S.1
Sunyaev, S.2
Bork, P.3
Dandekar, T.4
-
7
-
-
0036595304
-
Horizontal gene transfer in microbial genome evolution
-
Jain R, Rivera MC, Moore JE, Lake JA. Horizontal gene transfer in microbial genome evolution. Theor Popul Biol 2002, 61: 489-495
-
(2002)
Theor Popul Biol
, vol.61
, pp. 489-495
-
-
Jain, R.1
Rivera, M.C.2
Moore, J.E.3
Lake, J.A.4
-
8
-
-
0034780910
-
Horizontal gene transfer in prokaryotes: Quantification and classification
-
Koonin EV, Makarova KS, Aravind L. Horizontal gene transfer in prokaryotes: Quantification and classification. Annu Rev Microbiol 2001, 55: 709-742
-
(2001)
Annu Rev Microbiol
, vol.55
, pp. 709-742
-
-
Koonin, E.V.1
Makarova, K.S.2
Aravind, L.3
-
10
-
-
4043070854
-
Phylogenetic analysis based on genome-scale metabolic pathway reaction content
-
Hong SH, Kim TY, Lee SY. Phylogenetic analysis based on genome-scale metabolic pathway reaction content. Appl Microbiol Biotechnol 2004, 65: 203-210
-
(2004)
Appl Microbiol Biotechnol
, vol.65
, pp. 203-210
-
-
Hong, S.H.1
Kim, T.Y.2
Lee, S.Y.3
-
11
-
-
0033669672
-
Horizontal gene transfer among microbial genomes: New insights from complete genome analysis
-
Eisen JA. Horizontal gene transfer among microbial genomes: new insights from complete genome analysis. Curr Opin Genet Dev 2000, 10: 606-611
-
(2000)
Curr Opin Genet Dev
, vol.10
, pp. 606-611
-
-
Eisen, J.A.1
-
12
-
-
0035943134
-
On surrogate methods for detecting lateral gene transfer
-
Ragan MA. On surrogate methods for detecting lateral gene transfer. FEMS Microbiol Lett 2001, 201: 187-191
-
(2001)
FEMS Microbiol Lett
, vol.201
, pp. 187-191
-
-
Ragan, M.A.1
-
13
-
-
0036145420
-
Reconciling the many faces of lateral gene transfer
-
Lawrence JG, Ochman H. Reconciling the many faces of lateral gene transfer. Trends Microbiol 2002, 10: 1-4
-
(2002)
Trends Microbiol
, vol.10
, pp. 1-4
-
-
Lawrence, J.G.1
Ochman, H.2
-
14
-
-
0034992826
-
The closest BLAST hit is often not the nearest neighbor
-
Koski LB, Golding GB. The closest BLAST hit is often not the nearest neighbor. J Mol Evol 2001, 52: 540-542
-
(2001)
J Mol Evol
, vol.52
, pp. 540-542
-
-
Koski, L.B.1
Golding, G.B.2
-
15
-
-
0035827328
-
Microbial genes in the human genome: Lateral transfer or gene loss?
-
Salzberg SL, White O, Peterson J, Eisen JA. Microbial genes in the human genome: Lateral transfer or gene loss? Science 2001, 292: 1903-1906
-
(2001)
Science
, vol.292
, pp. 1903-1906
-
-
Salzberg, S.L.1
White, O.2
Peterson, J.3
Eisen, J.A.4
-
16
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res 1997, 25: 3389-3402
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
17
-
-
0034178257
-
Homology a personal view on some of the problems
-
Fitch WM. Homology a personal view on some of the problems. Trends Genet 2000, 16: 227-231
-
(2000)
Trends Genet
, vol.16
, pp. 227-231
-
-
Fitch, W.M.1
-
18
-
-
4944233611
-
PhyloGenie: Automated phylome generation and analysis
-
Frickey T, Lupas AN. PhyloGenie: Automated phylome generation and analysis. Nucleic Acids Res 2004, 32: 5231-5238
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 5231-5238
-
-
Frickey, T.1
Lupas, A.N.2
-
19
-
-
0037250391
-
HGT-DB: A database of putative horizontally transferred genes in prokaryotic complete genomes
-
Garcia-Vallve S, Guzman E, Montero MA, Romeu A. HGT-DB: A database of putative horizontally transferred genes in prokaryotic complete genomes. Nucleic Acids Res 2003, 31: 187-189
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 187-189
-
-
Garcia-Vallve, S.1
Guzman, E.2
Montero, M.A.3
Romeu, A.4
-
20
-
-
13944251386
-
A new computational method for the detection of horizontal gene transfer events
-
Tsirigos A, Rigoutsos I. A new computational method for the detection of horizontal gene transfer events. Nucleic Acids Res 2005, 33: 922-933
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 922-933
-
-
Tsirigos, A.1
Rigoutsos, I.2
-
21
-
-
19744383764
-
Detection and characterization of horizontal transfers in prokaryotes using genomic signature
-
Dufraigne C, Fertil B, Lespinats S, Giron A, Deschavanne P. Detection and characterization of horizontal transfers in prokaryotes using genomic signature. Nucleic Acids Res 2005, 33: e6
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Dufraigne, C.1
Fertil, B.2
Lespinats, S.3
Giron, A.4
Deschavanne, P.5
-
22
-
-
3042526849
-
Calculating the statistical significance of physical clusters of co-regulated genes in the genome: The role of chromatin in domain-wide gene regulation
-
Chang CF, Wai KM, Patterton HG. Calculating the statistical significance of physical clusters of co-regulated genes in the genome: The role of chromatin in domain-wide gene regulation. Nucleic Acids Res 2004, 32: 1798-1807
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1798-1807
-
-
Chang, C.F.1
Wai, K.M.2
Patterton, H.G.3
-
23
-
-
0035166979
-
The comprehensive microbial resource
-
Peterson JD, Umayam LA, Dickinson T, Hickey EK, White O. The comprehensive microbial resource. Nucleic Acids Res 2001, 29: 123-125
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 123-125
-
-
Peterson, J.D.1
Umayam, L.A.2
Dickinson, T.3
Hickey, E.K.4
White, O.5
-
24
-
-
0032499698
-
The universal ancestor
-
USA
-
Woese C. The universal ancestor. Proc Natl Acad Sci USA 1998, 95: 6854-6859
-
(1998)
Proc Natl Acad Sci
, vol.95
, pp. 6854-6859
-
-
Woese, C.1
-
25
-
-
0032855518
-
Gene transfer, speciation, and the evolution of bacterial genomes
-
Lawrence JG. Gene transfer, speciation, and the evolution of bacterial genomes. Curr Opin Microbiol 1999, 2: 519-523
-
(1999)
Curr Opin Microbiol
, vol.2
, pp. 519-523
-
-
Lawrence, J.G.1
-
26
-
-
0347824672
-
Inference of protein function and protein linkages in Mycobacterium tuberculosis based on prokaryotic genome organization: A combined computational approach
-
Strong M, Mallick P, Pellegrini M, Thompson MJ, Eisenberg D. Inference of protein function and protein linkages in Mycobacterium tuberculosis based on prokaryotic genome organization: A combined computational approach. Genome Biol 2003, 4: R59
-
(2003)
Genome Biol
, vol.4
-
-
Strong, M.1
Mallick, P.2
Pellegrini, M.3
Thompson, M.J.4
Eisenberg, D.5
-
27
-
-
0037052935
-
Connected gene neighborhoods in prokaryotic genomes
-
Rogozin IB, Makarova KS, Murvai J, Czabarka E, Wolf YI, Tatusov RL, Szekely LA et al. Connected gene neighborhoods in prokaryotic genomes. Nucleic Acids Res 2002, 30: 2212-2223
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 2212-2223
-
-
Rogozin, I.B.1
Makarova, K.S.2
Murvai, J.3
Czabarka, E.4
Wolf, Y.I.5
Tatusov, R.L.6
Szekely, L.A.7
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