-
2
-
-
0002576679
-
Identification of horizontally acquired elements in Helicobacter pylori and other prokaryotes using oligonucleotide difference analysis
-
Pride DT, Blaser MJ. Identification of horizontally acquired elements in Helicobacter pylori and other prokaryotes using oligonucleotide difference analysis. Genome Let 2002, 1:2-15.
-
(2002)
Genome Let.
, vol.1
, pp. 2-15
-
-
Pride, D.T.1
Blaser, M.J.2
-
3
-
-
0242500968
-
Informatics for unveiling hidden genome signatures
-
Abe T, Kanaya S, Kinouchi M, Ichiba Y, Kozuki T, Ikemura T. Informatics for unveiling hidden genome signatures. Genome Res 2003, 13:693-702.
-
(2003)
Genome Res.
, vol.13
, pp. 693-702
-
-
Abe, T.1
Kanaya, S.2
Kinouchi, M.3
Ichiba, Y.4
Kozuki, T.5
Ikemura, T.6
-
4
-
-
0037315735
-
Evolutionary implications of microbial genome tetanucleotide frequency biases
-
Pride DT, Meinersmann RJ, Wassenaar TM, Blaser MJ. Evolutionary implications of microbial genome tetanucleotide frequency biases. Genome Res 2003, 13:145-155.
-
(2003)
Genome Res.
, vol.13
, pp. 145-155
-
-
Pride, D.T.1
Meinersmann, R.J.2
Wassenaar, T.M.3
Blaser, M.J.4
-
5
-
-
13244253777
-
TETRA: A web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences
-
Teeling H, Waldmann J, Lombardot T, Bauer M, Glöckner FO. TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences. BMC Bioinformatics 2004, 5:163.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 163
-
-
Teeling, H.1
Waldmann, J.2
Lombardot, T.3
Bauer, M.4
Glöckner, F.O.5
-
6
-
-
13244279471
-
Global features of sequences of bacterial chromosomes, plasmids and phages revealed by analysis of oligonucleotide usage patterns
-
Reva ON, Tümmler B. Global features of sequences of bacterial chromosomes, plasmids and phages revealed by analysis of oligonucleotide usage patterns. BMC Bioinformatics 2004, 5:90.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 90
-
-
Reva, O.N.1
Tümmler, B.2
-
7
-
-
0032173634
-
Global dinucleotide signatures and analysis of genomic heterogeneity
-
Karlin S. Global dinucleotide signatures and analysis of genomic heterogeneity. Curr Opin Microbiol 1998, 1:598-610.
-
(1998)
Curr. Opin. Microbiol.
, vol.1
, pp. 598-610
-
-
Karlin, S.1
-
8
-
-
1842332701
-
Compositional biases of bacterial genomes and evolutionary implications
-
Karlin S, Mrazek J, Campbell A. Compositional biases of bacterial genomes and evolutionary implications. J Bacteriol 1997, 179:3899-3913.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 3899-3913
-
-
Karlin, S.1
Mrazek, J.2
Campbell, A.3
-
9
-
-
23744452722
-
Four basic symmetry types in the 7-cluster structure of microbial genomic sequences
-
Gorban A. N., Popova T. G., Zinovyev A. Y. Four basic symmetry types in the 7-cluster structure of microbial genomic sequences. In Silico Biol. 2005, 5:0025.
-
(2005)
Silico Biol.
, vol.5
, pp. 0025
-
-
Gorban, A.N.1
Popova, T.G.2
Zinovyev, A.Y.3
-
10
-
-
10044246531
-
Comparative genomics of Pseudomonas aeruginosa PAO1 and Pseudomonas putida KT2440: Orthologs, codon usage, REP elements and oligonucleotide motif signatures
-
Weinel C, Ussery DW, Ohlsson H, Sicheritz-Ponten T, Kiewitz C, Tümmler B. Comparative genomics of Pseudomonas aeruginosa PAO1 and Pseudomonas putida KT2440: orthologs, codon usage, REP elements and oligonucleotide motif signatures. Genome Letters 2002, 1: 175-187.
-
(2002)
Genome Letters
, vol.1
, pp. 175-187
-
-
Weinel, C.1
Ussery, D.W.2
Ohlsson, H.3
Sicheritz-Ponten, T.4
Kiewitz, C.5
Tümmler, B.6
-
11
-
-
0036937356
-
Global features of the Pseudomonas putida KT2440 genome sequence
-
Weinel C, Nelson KE, Tümmler B. Global features of the Pseudomonas putida KT2440 genome sequence. Environ Microbiol 2002, 4:809-818.
-
(2002)
Environ. Microbiol.
, vol.4
, pp. 809-818
-
-
Weinel, C.1
Nelson, K.E.2
Tümmler, B.3
-
12
-
-
0035891641
-
General method of rapid Smith/Birnstiel mapping adds for gap closure in shotgun microbial genome sequencing projects: Application to Pseudomonas putida KT2440
-
Weinel C, Tümmler B, Hilbert H, Nelson KE, Kiewitz C. General method of rapid Smith/Birnstiel mapping adds for gap closure in shotgun microbial genome sequencing projects: application to Pseudomonas putida KT2440. Nucleic Acids Res. 2001, 29:E110.
-
(2001)
Nucleic Acids Res.
, vol.29
-
-
Weinel, C.1
Tümmler, B.2
Hilbert, H.3
Nelson, K.E.4
Kiewitz, C.5
-
13
-
-
0242391986
-
Codon adaptation index as a measure of dominanting codon bias
-
Carbone A., Zinovyev A., Képès. Codon adaptation index as a measure of dominanting codon bias. Bioinformatics 2003, 19: 2005-2015.
-
(2003)
Bioinformatics
, vol.19
, pp. 2005-2015
-
-
Carbone, A.1
Zinovyev, A.2
Képès3
-
14
-
-
0011345871
-
Genome codon index of Pseudomonas aeruginosa: A codon index that utilizes whole genome sequence data
-
Kiewitz C, Weinel C, Tümmler B. Genome codon index of Pseudomonas aeruginosa: a codon index that utilizes whole genome sequence data. Genome Letters 2002, 1: 61-70.
-
(2002)
Genome Letters
, vol.1
, pp. 61-70
-
-
Kiewitz, C.1
Weinel, C.2
Tümmler, B.3
-
15
-
-
0033758756
-
Pathogenicity islands and the evolution of microbes
-
Hacker J, Kaper JB. Pathogenicity islands and the evolution of microbes. Annu Rev Microbiol 2000, 54:641-679.
-
(2000)
Annu. Rev. Microbiol.
, vol.54
, pp. 641-679
-
-
Hacker, J.1
Kaper, J.B.2
-
16
-
-
0038504021
-
Genomic islands and the evolution of catabolic pathways in bacteria
-
van der Meer JR, Sentchilo V. Genomic islands and the evolution of catabolic pathways in bacteria. Curr Opin Biotechnol 2003, 14:248-254.
-
(2003)
Curr. Opin. Biotechnol.
, vol.14
, pp. 248-254
-
-
van der Meer, J.R.1
Sentchilo, V.2
-
17
-
-
0031896498
-
The ars operon in the skin element of Bacillus subtilis confers resistance to arsenate and arsenite
-
Sato T, Kobayashi Y. The ars operon in the skin element of Bacillus subtilis confers resistance to arsenate and arsenite. J Bacteriol 1998, 180:1655-1661.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 1655-1661
-
-
Sato, T.1
Kobayashi, Y.2
-
18
-
-
0037377818
-
Comparative genomics of Salmonella enterica serovar Typhi strains Ty2 and CT18
-
Deng W, Liou SR, Plunkett G 3rd, Mayhew GF, Rose DJ, Burland V, Kodoyianni V, Schwartz DC, Blattner FR. Comparative genomics of Salmonella enterica serovar Typhi strains Ty2 and CT18. J Bacteriol 2003 185:2330-2337.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 2330-2337
-
-
Deng, W.1
Liou, S.R.2
Plunkett III, G.3
Mayhew, G.F.4
Rose, D.J.5
Burland, V.6
Kodoyianni, V.7
Schwartz, D.C.8
Blattner, F.R.9
-
19
-
-
0031823632
-
Molecular evolution of a pathogenicity island from enterohemorrhagic Escherichia coli O157:H7
-
Perna NT, Mayhew GF, Posfai G, Elliott S, Donnenberg MS, Kaper JB, Blattner FR. Molecular evolution of a pathogenicity island from enterohemorrhagic Escherichia coli O157:H7. Infect Immun 1998 66:3810-3817.
-
(1998)
Infect. Immun.
, vol.66
, pp. 3810-3817
-
-
Perna, N.T.1
Mayhew, G.F.2
Posfai, G.3
Elliott, S.4
Donnenberg, M.S.5
Kaper, J.B.6
Blattner, F.R.7
-
20
-
-
0242416999
-
Complete genome sequence and comparative genomics of Shigella flexneri serotype 2a strain 2457T
-
Wei J, Goldberg MB, Burland V, Venkatesan MM, Deng W, Fournier G, Mayhew GF, Plunkett G 3rd, Rose DJ, Darling A, et al. Complete genome sequence and comparative genomics of Shigella flexneri serotype 2a strain 2457T. Infect Immun 2003 71:2775-2786.
-
(2003)
Infect. Immun.
, vol.71
, pp. 2775-2786
-
-
Wei, J.1
Goldberg, M.B.2
Burland, V.3
Venkatesan, M.M.4
Deng, W.5
Fournier, G.6
Mayhew, G.F.7
Plunkett III, G.8
Rose, D.J.9
Darling, A.10
-
21
-
-
13944273799
-
The complete genome sequence of Francisella tularensis, the causative agent of tularemia
-
Larsson P, Oyston PC, Chain P, Chu MC, Duffield M, Fuxelius HH, Garcia E, Halltorp G, Johansson D, Isherwood KE, et al. The complete genome sequence of Francisella tularensis, the causative agent of tularemia. Nat Genet 2005 37:153-159.
-
(2005)
Nat. Genet.
, vol.37
, pp. 153-159
-
-
Larsson, P.1
Oyston, P.C.2
Chain, P.3
Chu, M.C.4
Duffield, M.5
Fuxelius, H.H.6
Garcia, E.7
Halltorp, G.8
Johansson, D.9
Isherwood, K.E.10
-
22
-
-
0034644159
-
The genome sequence of the plant pathogen Xylella fastidiosa. The Xylella fastidiosa Consortium of the Organization for Nucleotide Sequencing and Analysis
-
Simpson AJ, Reinach FC, Arruda P, Abreu FA, Acencio M, Alvarenga R, Alves LM, Araya JE, Baia GS, Baptista CS, et al. The genome sequence of the plant pathogen Xylella fastidiosa. The Xylella fastidiosa Consortium of the Organization for Nucleotide Sequencing and Analysis. Nature 2000 406:151-157.
-
(2000)
Nature
, vol.406
, pp. 151-157
-
-
Simpson, A.J.1
Reinach, F.C.2
Arruda, P.3
Abreu, F.A.4
Acencio, M.5
Alvarenga, R.6
Alves, L.M.7
Araya, J.E.8
Baia, G.S.9
Baptista, C.S.10
-
23
-
-
0034739881
-
Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti
-
Kaneko T, Nakamura Y, Sato S, Asamizu E, Kato T, Sasamoto S, Watanabe A, Idesawa K, Ishikawa A, Kawashima K, et al. Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti. DNA Res 2000 7:331-338.
-
(2000)
DNA Res.
, vol.7
, pp. 331-338
-
-
Kaneko, T.1
Nakamura, Y.2
Sato, S.3
Asamizu, E.4
Kato, T.5
Sasamoto, S.6
Watanabe, A.7
Idesawa, K.8
Ishikawa, A.9
Kawashima, K.10
-
24
-
-
0036928484
-
Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110
-
Kaneko T, Nakamura Y, Sato S, Minamisawa K, Uchiumi T, Sasamoto S, Watanabe A, Idesawa K, Iriguchi M, Kawashima K, et al. Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110. DNA Res 2002 9:189-97.
-
(2002)
DNA Res.
, vol.9
, pp. 189-197
-
-
Kaneko, T.1
Nakamura, Y.2
Sato, S.3
Minamisawa, K.4
Uchiumi, T.5
Sasamoto, S.6
Watanabe, A.7
Idesawa, K.8
Iriguchi, M.9
Kawashima, K.10
-
25
-
-
0030994798
-
Amelioration of bacterial genomes: Rates of change and exchange
-
Lawrence JG, Ochman H. Amelioration of bacterial genomes: rates of change and exchange. J Mol Evol 1997, 44:383-397.
-
(1997)
J. Mol. Evol.
, vol.44
, pp. 383-397
-
-
Lawrence, J.G.1
Ochman, H.2
-
26
-
-
0347285389
-
Sequence analysis of the mobile genome island pKLC102 of Pseudomonas aeruginosa C
-
Klockgether J, Reva O, Larbig K, Tümmler B. Sequence analysis of the mobile genome island pKLC102 of Pseudomonas aeruginosa C. J Bacteriol 2004, 186:518-534.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 518-534
-
-
Klockgether, J.1
Reva, O.2
Larbig, K.3
Tümmler, B.4
-
27
-
-
84885685475
-
NCBI Genome Sequence Database
-
NCBI Genome Sequence Database [http://www.ncbi.nlm.nih.gov/genomes/MICROBES/Complete.html]
-
-
-
-
28
-
-
84874665419
-
-
The Python home site
-
The Python home site [http://www.python.org/]
-
-
-
|