Assessment of porous silicon substrate for well-characterised sensitive DNA chip implement

Biosensors and Bioelectronics

Volumn 21, Issue 6, 2005, Pages 908-916

  Bessueille, F ^a   Dugas, V ^b   Vikulov, V ^c   Cloarec, J P ^a   Souteyrand, E ^a,b   Martin, J R ^a  

^a ECOLE CENTRALE DE LYON   (France)

^b Rosatech   (France)

^c TARAS SHEVCHENKO NATIONAL UNIVERSITY OF KYIV   (Ukraine)

Author keywords

Bio functionalisation; FT IR; Oligonucleotide synthesis; Porous silicon

Indexed keywords

DNA; FLUORESCENCE; FOURIER TRANSFORM INFRARED SPECTROSCOPY; GRAFTING (CHEMICAL); NUCLEIC ACIDS; OPTIMIZATION; SUBSTRATES; SYNTHESIS (CHEMICAL);

BIO-FUNCTIONALIZATION; FT-IR; OLIGONUCLEOTIDE SYNTHESIS; SILICON SUBSTRATES;

POROUS SILICON;

DNA; SILICON; SILICON DIOXIDE;

ARTICLE; DNA DETERMINATION; GENETIC ENGINEERING; OXIDATION; POROSITY; SURFACE PROPERTY; THERMAL ANALYSIS; WETTABILITY;

CRYSTALLIZATION; DNA; EQUIPMENT DESIGN; EQUIPMENT FAILURE ANALYSIS; MATERIALS TESTING; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; POROSITY; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY; SILICON; SURFACE PROPERTIES;

EID: 27444434600     PISSN: 09565663     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bios.2005.02.007     Document Type: Article

References (36)

1. M. Archer, M. Christophersen, and P.M. Fauchet Macroporous silicon electrical sensor for DNA hybridization detection Biomed. Microdevices 6 2004 203 211
2. S.C. Bayliss, D.A. Hutt, Q. Zhang, P. Harris, N.J. Phillips, and A. Smith Structural study of porous silicon Thin Solid Films 255 1995 128 131
3. K.L. Beattie, W.G. Beattie, L. Meng, S.L. Turner, R. Coral-Vazquez, D.D. Smith, P.M. McIntyre, and D.D. Dao Advances in genosensor research Clin. Chem. 41 1995 700 706
4. S.G. Beaucage Strategies in the preparation of DNA Oligonucleotide arrays for diagnostic application Curr. Med. Chem. 8 2001 1213 1244
5. M. Beier, and J.D. Hoheisel Versatile derivatisation of solid support media for covalent bonding on DNA-microchips Nucleic Acids Res. 27 1999 1970 1977
6. M. Bengtsson, S. Ekström, J. Drott, A. Collins, E. Csöregi, G. Marko-varga, and T. Laurell Applications of microstructured porous silicon as a biocatalytic surface Phys. Stat. Sol. (a) 182 2000 495 504
7. V. Benoit, A. Steel, M. Torres, Y.-Yi. Yu, H. Yang, and J. Cooper Evaluation of three-dimensional microchannel glass biochips for multiplexed nucleic acid fluorescence hybridization assays Anal. Chem. 73 2001 2412 2420
8. M. Bras, V. Dugas, F. Bessueille, J.-P. Cloarec, J.-R. Martin, M. Cabrera, J.-P. Chauvet, E. Souteyrand, and M. Garrigues Optimisation of a silicon/silicon dioxide substrate for a fluorescence DNA microarray Biosens. Bioelectron. 20 2004 796 805
9. S. Chan, P.M. Fauchet, Y. Li, L.J. Rothberg, and B.L. Miller Porous Silicon microcavities for biosensing applications Phys. Stat. Sol. (a) 182 2000 541 546
10. L.A. Chrisey, C.E. O'Ferrall, B.J. Spargo, C.S. Dulcey, and J.M. Calvert Fabrication of patterned DNA surfaces Nucleic Acids Res. 24 1996 3040 3047
11. 2 substrates: characterization by electrochemical impedance measurements and radiolabelling Biosens. Bioelectron. 17 2002 405 412
12. A.G. Cullis, L.T. Canham, and P.D.J. Calcott The structural and luminescence properties of porous silicon J. Appl. Phys. 82 1997 909 956
13. P.L. Dolan, Y. Wu, L.K. Ista, R.L. Metzenberg, M.A. Nelson, and G.P. Lopez Robust and efficient synthetic method for forming DNA microarrays Nucleic Acids Res. 29 2001 107
14. V. Dugas, G. Depret, X. Nesme, Y. Chevalier, and E. Souteyrand Immobilization of single-stranded DNA fragments to solid surfaces and their repeatable specific hybridization: covalent binding or adsorption? Sens. Actuators B 101 2004 112 121
15. J. Fidanza, M. Glazer, D. Mutnick, G. McGall, and C. Frank High capacity substrates as a platform for a DNA probe array genotyping assay Nucl. Nucl. Nucleic acids 20 2001 533 538
16. P.N. Gilles, D.J. Wu, C.B. Foster, P.J. Dillon, and S.J. Chanock Single nucleotide polymorphic discrimination by an electronic dot blot assay on semiconductor microchips Nat. Biotechnol. 17 1999 365 370
17. N.M. Grubor, R. Shinar, R. Jankowiak, M.D. Porter, and G.J. Small Novel biosensor chip for simultaneous detection of DNA-carcinogen adducts with low temperature fluorescence Biosens. Bioelectron. 19 2004 547 556
18. A. Janshoff, K.-P.S. Dancil, C. Steinem, D.P. Greiner, V.S.-Y. Lin, C. Gurtner, K. Motesharei, M.J. Sailor, and M.R. Ghadhiri Macroporous p-type silicon Fabry-Perot layers: fabrication, characterization, and applications in biosensing J. Am. Chem. Soc. 120 1998 12108 12116
19. Y. Kato, T. Ito, and A. Hiraki Low temperature oxidation of crystalline porous silicon Appl. Surf. Sci. 41-42 1989 614 618
20. L.H. Lie, S.N. Patole, A.R. Pike, L.C. Ryder, B.A. Connolly, A.D. Ward, E.M. Tuite, A. Houlton, and B.R. Horrocks Immobilisation and synthesis of DNA on Si(1 1 1), nanocrystalline porous silicon and silicon nanoparticles Faraday Discuss. 125 2004 235 249 (discussion 293-309)
21. V.S. Lin, K. Motesharei, K.P. Dancil, M.J. Sailor, and M.R. Ghadiri A porous silicon-based optical interferometric biosensor Science 278 1997 840 843
22. U. Maskos, and E.M. Southern Oligonucleotide hybridisations on glass supports: a novel linker for oligonucleotide synthesis and hybridisation properties of oligonucleotides synthesised in situ Nucleic Acids Res. 20 1992 1679 1684
23. M. Mosquet, Y. Chevalier, P. Le Perchec, and J.P. Guicquero Synthesis of poly(ethylene oxyde) with a terminal amino group by anionic polymerization of ethylene oxide initiated by aminoalcoholates Macromol. Chem. Phys. 198 1997 2457 2474
24. A.C. Pease, D. Solas, E.J. Sullivan, M.T. Cronin, C.P. Holmes, and S.P. Fodor Light-generated oligonucleotide arrays for rapid DNA sequence analysis Proc. Natl. Acad. Sci. 91 1994 5022 5026
25. M.I. Pividori, A. Merkoçi, and S. Alegret Electrochemical genosensor design: immobilisation of oligonucleotides onto transducer surfaces and detection methods Biosens. Bioelectron. 15 2000 291 303
26. D. Proudnikov, E. Timofeev, and A. Mirzabekov Immobilization of DNA in polyacrylamide gel for the manufacture of DNA and DNA-oligonucleotide microchips Anal. Biochem. 259 1998 34 41
27. S. Rönnebeck, J. Carstensen, S. Ottow, and H. Föll Crystal orientation dependence of macropore growth in n-type silicon Electrochem. Solid-State Lett. 2 1999 126 128
28. M.J. Schöning, A. Kurowski, M. Thust, P. Kordos, J.W. Schultze, and H. Lüth Capacitive microsensors for biochemical sensing based on porous silicon technology Sens. Actuators B 64 2000 59 64
29. R.G. Sosnowski, E. Tu, W.F. Butler, J.P. O'Connell, and M.J. Heller Rapid determination of single base mismatch mutations in DNA hybrids by direct electric field control Proc. Natl. Acad. Sci. 94 1997 1119 1123
30. E.M. Southern, S.C. Case-green, J.K. Elder, M. Johnson, K.U. Mir, L. Wang, and J.C. Williams Arrays of complementary oligonucleotides for analysing the hybridisation behaviour of nucleic acids Nucleic Acids Res. 22 1994 1368 1373
31. M. Thust, M.J. Schöning, S. Frohnhoff, R. Arens-Fischer, P. Kordos, and H. Lüth Porous silicon as a substrate material for potentiometric biosensors Meas. Sci. Technol. 7 1996 26 29
32. A.M. Tinsley-bown, L.T. Canham, M. Hollings, M.H. Aderson, C.L. Reeves, T.I. Cox, S. Nicklin, D.J. Squirrell, E. Perkins, A. Hutchinson, M.J. Sailor, and A. Wun Tuning the pore size and surface chemistry of porous silicon for immunoassays Phys. Stat. Sol. (a) 182 2000 533 547
33. K.C. Vrancken, K. Possemiers, P. Van Der Voort, and E.F. Vansant Surface modification of silica gels with aminoorganosilanes Colloids Surf. A 98 1995 235 241
34. S.R. Wasserman, Y.-T. Tao, and G.M. Whitesides Structures and reactivity of alkylsiloxane monolayers formed by reaction of alkyltrichlorosilanes on silicon substrates Langmuir 5 1989 1074 1087
35. F. Wei, B. Sun, Y. Guo, and X.S. Zhao Monitoring hybridization on alkyl modified silicon surface through capacitance measurement Biosens. Bioelectron. 18 2003 1157 1163
36. N. Zammatteo, L. Jeanmart, S. Hamels, S. Courtois, P. Louette, L. Hevesi, and J. Remacle Comparison between different strategies of covalent attachment of DNA to glass surfaces to build DNA microarrays Anal. Biochem. 280 2000 143 150