메뉴 건너뛰기




Volumn 11, Issue 11, 2005, Pages 1701-1709

Size, constant sequences, and optimal selection

Author keywords

Amplification; Isoleucine; Randomized region; Recurrence; RNA; SELEX

Indexed keywords

APTAMER; ISOLEUCINE; NUCLEOTIDE; RNA;

EID: 27144444307     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.2161305     Document Type: Article
Times cited : (59)

References (29)
  • 1
    • 0027488624 scopus 로고
    • Isolation of new ribozymes from a large pool of random sequences
    • Bartel, D.P. and Szostak, J.W. 1993. Isolation of new ribozymes from a large pool of random sequences. Science 261: 1411-1418.
    • (1993) Science , vol.261 , pp. 1411-1418
    • Bartel, D.P.1    Szostak, J.W.2
  • 2
    • 11144330098 scopus 로고    scopus 로고
    • Natural and engineered nucleic acids as tools to explore biology
    • Breaker, R.R. 2004. Natural and engineered nucleic acids as tools to explore biology. Nature 432: 838-845.
    • (2004) Nature , vol.432 , pp. 838-845
    • Breaker, R.R.1
  • 3
    • 1942489258 scopus 로고    scopus 로고
    • Informational complexity and functional activity of RNA structures
    • Carothers, J.M., Oestreich, S.C., Davis, J.H., and Szostak, J.W. 2004. Informational complexity and functional activity of RNA structures. J. Am. Chem. Soc. 126: 5130-5137.
    • (2004) J. Am. Chem. Soc. , vol.126 , pp. 5130-5137
    • Carothers, J.M.1    Oestreich, S.C.2    Davis, J.H.3    Szostak, J.W.4
  • 4
    • 0347089036 scopus 로고    scopus 로고
    • A deoxyribozyme that harnesses light to repair thymine dimers in DNA
    • Chinnapen, D.J. and Sen, D. 2004. A deoxyribozyme that harnesses light to repair thymine dimers in DNA. Proc. Natl. Acad. Sci. 101: 65-69.
    • (2004) Proc. Natl. Acad. Sci. , vol.101 , pp. 65-69
    • Chinnapen, D.J.1    Sen, D.2
  • 6
    • 0036849943 scopus 로고    scopus 로고
    • RNA-catalyzed thioester synthesis
    • Coleman, T.M. and Huang, F. 2002. RNA-catalyzed thioester synthesis. Chem. Biol. 9: 1227-1236.
    • (2002) Chem. Biol. , vol.9 , pp. 1227-1236
    • Coleman, T.M.1    Huang, F.2
  • 7
    • 1142281951 scopus 로고    scopus 로고
    • Dinucleotide junction cleavage versatility of 8-17 deoxyribozyme
    • Cruz, R.P., Withers, J.B., and Li, Y. 2004. Dinucleotide junction cleavage versatility of 8-17 deoxyribozyme. Chem. Biol. 11: 57-67.
    • (2004) Chem. Biol. , vol.11 , pp. 57-67
    • Cruz, R.P.1    Withers, J.B.2    Li, Y.3
  • 8
    • 0029147392 scopus 로고
    • Structurally complex and highly active RNA ligases derived from random RNA sequences
    • Ekland, E.H., Szostak, J.W., and Bartel, D.P. 1995. Structurally complex and highly active RNA ligases derived from random RNA sequences. Science 269: 364-370.
    • (1995) Science , vol.269 , pp. 364-370
    • Ekland, E.H.1    Szostak, J.W.2    Bartel, D.P.3
  • 9
    • 0025074907 scopus 로고
    • In vitro selection of RNA molecules that bind specific ligands
    • Ellington, A.D. and Szostak, J.W. 1990. In vitro selection of RNA molecules that bind specific ligands. Nature 346: 818-822.
    • (1990) Nature , vol.346 , pp. 818-822
    • Ellington, A.D.1    Szostak, J.W.2
  • 10
    • 2442566895 scopus 로고    scopus 로고
    • RNA-mediated metal-metal bond formation in the synthesis of hexagonal palladium nanoparticles
    • Gugliotti, L.A., Feldheim, D.L., and Eaton, B.E. 2004. RNA-mediated metal-metal bond formation in the synthesis of hexagonal palladium nanoparticles. Science 304: 850-852.
    • (2004) Science , vol.304 , pp. 850-852
    • Gugliotti, L.A.1    Feldheim, D.L.2    Eaton, B.E.3
  • 11
    • 0033930772 scopus 로고    scopus 로고
    • Replicability and recurrence in the experimental evolution of a group I ribozyme
    • Hanczyc, M.M. and Dorit, R.L. 2000. Replicability and recurrence in the experimental evolution of a group I ribozyme. Mol. Biol. Evol. 17: 1050-1060.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 1050-1060
    • Hanczyc, M.M.1    Dorit, R.L.2
  • 12
    • 0034687806 scopus 로고    scopus 로고
    • RNA-Catalyzed CoA, NAD, and FAD synthesis from phosphopantetheine, NMN, and FMN
    • Huang, F., Bugg, C.W., and Yarus, M. 2000. RNA-Catalyzed CoA, NAD, and FAD synthesis from phosphopantetheine, NMN, and FMN. Biochemistry 39: 15548-15555.
    • (2000) Biochemistry , vol.39 , pp. 15548-15555
    • Huang, F.1    Bugg, C.W.2    Yarus, M.3
  • 13
    • 0037319334 scopus 로고    scopus 로고
    • Finding specific RNA motifs: Function in a zeptomole world?
    • Knight, R.D. and Yarus, M. 2003. Finding specific RNA motifs: Function in a zeptomole world? RNA 9: 218-230.
    • (2003) RNA , vol.9 , pp. 218-230
    • Knight, R.D.1    Yarus, M.2
  • 14
    • 4344641945 scopus 로고    scopus 로고
    • BayesFold: Rational 2 degrees folds that combine thermodynamic, covariation, and chemical data for aligned RNA sequences
    • Knight, R.D., Birmingham, A., and Yarus, M. 2004. BayesFold: Rational 2 degrees folds that combine thermodynamic, covariation, and chemical data for aligned RNA sequences. RNA 10: 1323-1336.
    • (2004) RNA , vol.10 , pp. 1323-1336
    • Knight, R.D.1    Birmingham, A.2    Yarus, M.3
  • 15
    • 21244459165 scopus 로고    scopus 로고
    • A more complex isoleucine aptamer with a cognate triplet
    • Legiewicz, M. and Yarus, M. 2005. A more complex isoleucine aptamer with a cognate triplet. J. Biol. Chem. 280: 19815-19822.
    • (2005) J. Biol. Chem. , vol.280 , pp. 19815-19822
    • Legiewicz, M.1    Yarus, M.2
  • 16
    • 1142277795 scopus 로고    scopus 로고
    • Assessing the likelihood of recurrence during RNA evolution in vitro
    • Lehman, N. 2004. Assessing the likelihood of recurrence during RNA evolution in vitro. Artif. Life 10: 1-22.
    • (2004) Artif. Life , vol.10 , pp. 1-22
    • Lehman, N.1
  • 17
    • 0142240407 scopus 로고    scopus 로고
    • Selection of the simplest RNA that binds isoleucine
    • Lozupone, C., Changayil, S., Majerfeld, I., and Yarus, M. 2003. Selection of the simplest RNA that binds isoleucine. RNA 9: 1315-1322.
    • (2003) RNA , vol.9 , pp. 1315-1322
    • Lozupone, C.1    Changayil, S.2    Majerfeld, I.3    Yarus, M.4
  • 18
    • 0031923050 scopus 로고    scopus 로고
    • Isoleucine:RNA sites with essential coding sequences
    • Majerfeld, I. and Yarus, M. 1998. Isoleucine:RNA sites with essential coding sequences. RNA 4: 471-478.
    • (1998) RNA , vol.4 , pp. 471-478
    • Majerfeld, I.1    Yarus, M.2
  • 20
    • 15444375312 scopus 로고    scopus 로고
    • In vitro selection of structure-switching signaling aptamers
    • Nutiu, R. and Li, Y. 2005. In vitro selection of structure-switching signaling aptamers. Angew. Chem. Int. Ed. Engl. 44: 1061-1065.
    • (2005) Angew. Chem. Int. Ed. Engl. , vol.44 , pp. 1061-1065
    • Nutiu, R.1    Li, Y.2
  • 21
    • 0025332385 scopus 로고
    • Selection in vitro of an RNA enzyme that specifically cleaves single-stranded DNA
    • Robertson, D.L. and Joyce, G.F. 1990. Selection in vitro of an RNA enzyme that specifically cleaves single-stranded DNA. Nature 344: 467-468.
    • (1990) Nature , vol.344 , pp. 467-468
    • Robertson, D.L.1    Joyce, G.F.2
  • 22
    • 0031259915 scopus 로고    scopus 로고
    • Accessing rare activities from random RNA sequences: The importance of the length of molecules in the starting pool
    • Sabeti, P.C., Unrau, P.J., and Bartel, D.P. 1997. Accessing rare activities from random RNA sequences: The importance of the length of molecules in the starting pool. Chem. Biol. 4: 767-774.
    • (1997) Chem. Biol. , vol.4 , pp. 767-774
    • Sabeti, P.C.1    Unrau, P.J.2    Bartel, D.P.3
  • 23
    • 0035498871 scopus 로고    scopus 로고
    • In vitro evolution suggests multiple origins for the hammerhead ribozyme
    • Salehi-Ashtiani, K. and Szostak, J.W. 2001. In vitro evolution suggests multiple origins for the hammerhead ribozyme. Nature 414: 82-84.
    • (2001) Nature , vol.414 , pp. 82-84
    • Salehi-Ashtiani, K.1    Szostak, J.W.2
  • 25
    • 0025194307 scopus 로고
    • Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase
    • Tuerk, C. and Gold, L. 1990. Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science 249: 505-510.
    • (1990) Science , vol.249 , pp. 505-510
    • Tuerk, C.1    Gold, L.2
  • 26
    • 2442701826 scopus 로고    scopus 로고
    • Ligation activity of fragmented ribozymes in frozen solution: Implications for the RNA world
    • Vlassov, A.V., Johnston, B.H., Landweber, L.F., and Kazakov, S.A. 2004. Ligation activity of fragmented ribozymes in frozen solution: Implications for the RNA world. Nucleic Acids Res. 32: 2966-2974.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 2966-2974
    • Vlassov, A.V.1    Johnston, B.H.2    Landweber, L.F.3    Kazakov, S.A.4
  • 27
    • 0142075327 scopus 로고    scopus 로고
    • Genetic control by metabolite-binding riboswitches
    • Winkler, W.C. and Breaker, R.R. 2003. Genetic control by metabolite-binding riboswitches. Chembiochem. 4: 1024-1032.
    • (2003) Chembiochem. , vol.4 , pp. 1024-1032
    • Winkler, W.C.1    Breaker, R.R.2
  • 28
    • 22244460077 scopus 로고    scopus 로고
    • The scope of selection
    • (ed. L. de Pouplana), Landes Bioscience, Georgetown, TX
    • Yarus, M. and Knight, R.D. 2004. The scope of selection. In The genetic code and origin of life (ed. L. de Pouplana), pp. 75-91. Landes Bioscience, Georgetown, TX.
    • (2004) The Genetic Code and Origin of Life , pp. 75-91
    • Yarus, M.1    Knight, R.D.2
  • 29
    • 22244445209 scopus 로고    scopus 로고
    • Origins of the genetic code: The escaped triplet theory
    • Yarus, M., Caporaso, J.G., and Knight, R. 2005. Origins of the genetic code: The escaped triplet theory. Annu. Rev. Biochem. 74: 179-198.
    • (2005) Annu. Rev. Biochem. , vol.74 , pp. 179-198
    • Yarus, M.1    Caporaso, J.G.2    Knight, R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.