Isoleucine:RNA sites with associated coding sequences

RNA

Volumn 4, Issue 4, 1998, Pages 471-478

  Majerfeld, Irene ^a   Yarus, Michael ^a  

^a UNIVERSITY OF COLORADO   (United States)

Author keywords

Aliphatic; Amino acid; Genetic code; Hydrophobic; Selection amplification

Indexed keywords

AMINO ACID; ISOLEUCINE; RNA;

AMINO ACID SEQUENCE; ARTICLE; BINDING SITE; GENETIC CODE; HYDROPHOBICITY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN RNA BINDING;

AMIDES; AMINO ACIDS; BASE SEQUENCE; BINDING SITES; CHROMATOGRAPHY, AFFINITY; ISOLEUCINE; LEAD; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; RNA; SEQUENCE ANALYSIS, RNA; ZINC;

EID: 0031923050     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (20)

1. Chen L, Frankel AD. 1995. A peptide interaction in the major groove of RNA resembles protein interactions in the minor groove of DNA. Proc Natl Acad Sci USA 92:5077-5081.
2. 2+. RNA 1:538-550.
3. Ciesiolka J, Illangasekare M, Majerfeld I, Nickles T, Welch M, Yarus M, Zinnen S. 1996. Affinity selection-amplification from randomized ribonucleotide pools. Methods Enzymol 267:315-335.
4. Ciesiolka J, Lorenz S, Erdmann VA. 1992. Structural analysis of three prokaryotic 5S rRNA-ribosomal-protein complexes by means of Pb(II)-induced hydrolysis. Eur J Biochem 204:575-585.
5. Conn MM, Prudent JR, Schultz PG. 1996. Porphyrin metalation catalyzed by a small RNA molecule. J Am Chem Soc 118:7012-7013.
6. Connell GJ, Illangasekare M, Yarus M. 1993. Three small ribonucleotides with specific arginine sites. Biochemistry 32:5497-5502.
7. Connell GJ, Yarus M. 1994. RNAs with dual specificity and dual RNAs with similar specificity. Science 264:1137-1141.
8. Famulok M. 1994. Molecular recognition of amino acids by RNA-aptamers: An L-citrulline binding RNA motif and its evolution into an L-arginine binder. J Am Chem Soc 116:1698-1706.
9. Geiger A, Burgstaller P, von der Eltz H, Roeder A, Famulok M. 1996. RNA aptamers that bind L-arginine with sub-micromolar dissociation constants and high enantioselectivity. Nucleic Acids Res 24:1029-1036.
10. Jaeger JA, Turner DH, Zucker M. 1989. Improved predictions of secondary structure for RNA. Proc Natl Acad Sci USA 86:7706-7710.
11. Krol A, Carbon PA. 1989. A guide for probing native and small nuclear RNA and ribonucleoprotein structures. Methods Enzymol 180:212-227.
12. la Cour TF, Nyborg J, Thirup S, Clark BFC. 1985. Structural details of the binding of GDP to elongation factor Tu from E. coli as studied by X-ray crystallography. EMBO J 4:2385-2388.
13. Li Y, Sen D. 1996. A catalytic DNA for porphyrin metallation. Nature Struct Biol 3:743-747.
14. Majerfeld I, Yarus M. 1994. An RNA pocket for an aliphatic hydrophobe. Nature Struct Biol 1:287-292.
15. Puglisi JD, Chen L, Blanchard S, Frankel AD. 1995. Solution structure of a bovine immunodeficiency virus Tat-TAR peptide-RNA complex. Science 270:1200-1203.
16. Tao J, Frankel AD. 1995. Arginine-binding RNAs resembling TAR identified by in-vitro selection. Biochemistry 35:2229-2238.
17. Woese CR, Dugre DH, Dugre SA, Kondo M. Saxinger WC. 1967. On the fundamental nature and evolution of the genetic code. Cold Spring Harbor Symp Quant Biol 31:723-736.
18. Yarus M. 1988. A specific amino acid binding site composed of RNA. Science 240:1751-1758.
19. Yarus M. 1998. Amino acids as RNA ligands; a DIRT theory for the origin of the code. J Mol Evol. In press.
20. Ye X, Kumar RA, Patel DJ. 1995. Molecular recognition in the bovine immunodeficiency virus Tat peptide-TAR RNA complex. Chem Biol 2:827-840.