A more complex isoleucine aptamer with a cognate triplet

Journal of Biological Chemistry

Volumn 280, Issue 20, 2005, Pages 19815-19822

  Legiewicz, Michal ^a   Yarus, Michael ^a  

^a UNIVERSITY OF COLORADO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; BIOCHEMISTRY; GENETIC ENGINEERING; RNA; STEREOCHEMISTRY;

CONJUGATE TRIPLET; GENETIC CODES; ISOLEUCINE APTAMERS; NUCLEOTIDES;

PROTEINS;

AMINO ACID; APTAMER; ISOLEUCINE; NUCLEOTIDE; PRIMER RNA; RNA; OLIGORIBONUCLEOTIDE;

AMINO ACID ANALYSIS; ANTICODON; ARTICLE; BINDING SITE; CODON; GENETIC CODE; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RNA BINDING; STEREOCHEMISTRY; AFFINITY CHROMATOGRAPHY; CHEMISTRY; CONFORMATION; GENETICS; ISOLATION AND PURIFICATION;

ANTICODON; BASE SEQUENCE; BINDING SITES; CHROMATOGRAPHY, AFFINITY; CODON; ISOLEUCINE; NUCLEIC ACID CONFORMATION; OLIGORIBONUCLEOTIDES; RNA;

EID: 21244459165     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M502329200     Document Type: Article

References (35)

1. Doudna, J. A., and Cech, T. R. (2002) Nature 418, 222-228
2. Nissen, P., Hansen, J., Ban, N., Moore, P. B., and Steitz, T. A. (2000) Science 289, 920-930
3. Winkler, W. C., and Breaker, R. R. (2003) Chembiochem. 4, 1024-1032
4. Mandal, M., and Breaker, R. R. (2004) Nat. Rev. Mol. Cell. Biol. 5, 451-463
5. Gilbert, W. (1986) Nature 319, 618
6. Ellington, A. D., and Szostak, J. W. (1990) Nature 346, 818-822
7. Robertson, D. L., and Joyce, G. F. (1990) Nature 344, 467-468
8. Tuerk, C., and Gold, L. (1990) Science 249, 505-510
9. Famulok, M., and Szostak, J. W. (1992) J. Am. Chem. Soc. 114, 3990-3991
10. Burgstaller, P., Kochoyan, M., and Famulok, M. (1995) Nucleic Acids Res. 23, 4769-4776
11. Connell, G. J., Illangsekare, M., and Yarus, M. (1993) Biochemistry 32, 5497-5502
12. Connell, G. J., and Yarus, M. (1994) Science 264, 1137-1141
13. Geiger, A., Burgstaller, P., von der Eltz, H., Roeder, A., and Famulok, M. (1996) Nucleic Acids Res. 24, 1029-1036
14. Yang, Y., Kochoyan, M., Burgstaller, P., Westhof, E., and Famulok, F. (1996) Science 272, 1343-1346
15. Majerfeld, I., and Yarus, M. (1994) Nat. Struct. Biol. 1, 287-292
16. Majerfeld, I., and Yarus, M. (1998) RNA (N. Y.) 4, 471-478
17. Mannironi, C., Scerch, C., Fruscoloni, P., and Tocchini-Valentini, G. P. (2000) RNA (N. Y.) 6, 520-527
18. Illangasekare, M., and Yarus, M. (2002) J. Mol. Evol. 54, 298-311
19. Yarus, M. (1998) J. Mol. Evol. 47, 109-117
20. Yarus, M. (2000) RNA (N. Y.) 6, 475-484
21. Yarus, M., Knight, R. D., and Caporaso, J. G. (2005) Ann. Rev. Biochem. 74, 179-198
22. Lozupone, C., Changayil, S., Majerfeld, I., and Yarus, M. (2003) RNA (N. Y.) 9, 1315-1322
23. Carothers, J. M., Oestreich, S. C., Davis, J. H., and Szostak, J. W. (2004) J. Am. Chem. Soc. 126, 5130-5137
24. Schneider, T. D., Stormo, G. D., Gold, L., and Ehrenfeucht, A. (1986) J. Mol. Biol. 188, 415-431
25. de Zwart, I., Lozupone, C., Knight, R., Birmingham, A., Illangasekare, M., Jadhav, V., Legiewicz, M., Majerfeld, I., Widman, J., and Yarus, M. (2005) in Handbook of RNA Biochemistry (Hartmann, R. K. Bindereif, A. Schon, A., and Westhof, E., eds) Vol. 2, pp. 783-806, Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim
26. Ciesiolka, J., Illangasekare, M., Majerfeld, I., Nickles, T., Welch, M., Yarus, M., and Zinnen, S. (1996) Methods Enzymol. 267, 315-335
27. Krol, A., and Carbon, P. (1989) Methods Enzymol. 180, 212-227
28. Ciesiolka, J., and Yarus, M. (1996) RNA (N. Y.) 2, 785-793
29. Thompson, J. D., Higgins, D. G., and Gibson, T. J. (1994) Nucleic Acids Res. 22, 4673-4680
30. Walter, A. E., Turner, D. H., Kim, J., Lyttle, M. H., Muller, P., Mathews, D. H., and Zuker, M. (1994) Proc. Natl. Acad. Sci. U. S. A. 91, 9218-9222
31. Knight, R. D., and Yarus, M. (2003) Nucleic Acids Res. 31, e30
32. Knight, R. D., Birmingham, A., and Yarus, M. (2004) RNA (N. Y.) 10, 1323-1336
33. Gorodkin, J., Heyer, L. J., Brunak, S., and Stormo, G. D. (1997) Comput. Appl. Biosci. 13, 583-586
34. Yarus, M., and Knight, R. D. (2004) in The Genetic Code and Origin of Life (de Pouplana, L. ed) pp. 75-91, Landes Bioscience, Georgetown, TX
35. Knight, R. D., and Yarus, M. (2003) RNA (N. Y.) 9, 218-230