Speciation of Campylobacter coli, C. jejuni, C. helveticus, C. lari, C. sputorum, and C. upsaliensis by matrix-assisted laser desorption ionization-time of flight mass spectrometry

Applied and Environmental Microbiology

Volumn 71, Issue 10, 2005, Pages 6292-6307

  Mandrell, Robert E ^a   Harden, Leslie A ^a   Bates, Anna ^a   Miller, William G ^a   Haddon, William F ^a   Fagerquist, Clifton K ^a  

^a WESTERN REGIONAL RESEARCH CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOMARKERS; DESORPTION; GENES; IONIZATION; LASER APPLICATIONS; ORGANIC ACIDS; SPECTROMETRY;

BIOMARKER IONS; MATRIX-ASSISTED LASER DESORPTION IONIZATION MASS SPECTROMETRY; STRAIN DIFFERENTIATION;

ESCHERICHIA COLI;

BACTERIAL PROTEIN; BIOLOGICAL MARKER; CHAPERONIN; PROTEIN HU HCJ; PROTEIN RPIL; UNCLASSIFIED DRUG;

BIOMARKER; FOOD SAFETY; IDENTIFICATION METHOD; SPECIATION (BIOLOGY);

ACCURACY; ARTICLE; BACTERIAL GENOME; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATE; CAMPYLOBACTER; CAMPYLOBACTER COLI; CAMPYLOBACTER HELVETICUS; CAMPYLOBACTER JEJUNI; CAMPYLOBACTER LARI; CAMPYLOBACTER SPUTORUM; CAMPYLOBACTER UPSALIENSIS; CAT; DOG; FOOD SAFETY; GENETIC POLYMORPHISM; HUMAN; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; POULTRY; SPECIES DIFFERENTIATION; SWINE;

ANIMALS; BACTERIAL TYPING TECHNIQUES; CAMPYLOBACTER; CAMPYLOBACTER COLI; CAMPYLOBACTER INFECTIONS; CAMPYLOBACTER JEJUNI; CAMPYLOBACTER LARI; CAMPYLOBACTER SPUTORUM; CAMPYLOBACTER UPSALIENSIS; CAT DISEASES; CATS; CATTLE; CULTURE MEDIA; DOG DISEASES; DOGS; FOOD MICROBIOLOGY; HUMANS; SPECIES SPECIFICITY; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

ANIMALIA; BACTERIA (MICROORGANISMS); CAMPYLOBACTER; CAMPYLOBACTER COLI; CAMPYLOBACTER HELVETICUS; CAMPYLOBACTER JEJUNI; CAMPYLOBACTER LARI; CAMPYLOBACTER SPUTORUM; CAMPYLOBACTER UPSALIENSIS; CANIS FAMILIARIS; ESCHERICHIA COLI; SUS SCROFA;

EID: 26844443336     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.71.10.6292-6307.2005     Document Type: Article

References (73)

1. Abbott, S. L., M. Waddington, D. Lindquist, J. Ware, W. Cheung, J. Ely, and J. M. Janda. 2005. Description of Campylobacter curvus and C. curvus-like strains associated with sporadic episodes of bloody gastroenteritis and Brainerd's diarrhea. J. Clin. Microbiol. 43:585-588.
2. Acuff, G. R. 1992. Media, reagents, and stains, p. 1093-1208. In C. Vanderzant and D. F. Splittstoesser (ed.), Compendium of methods for the microbiological examination of foods. American Public Health Association, Washington, D.C.
3. Al Rashid, S. T., I. Dakuna, H. Louie, D. Ng, P. Vandamme, W. Johnson, and V. L. Chan. 2000. Identification of Campylobacter jejuni, C. coli, C. lari, C. upsaliensis, Arcobacter butzleri, and A. butzleri-like species based on the glyA gene. J. Clin. Microbiol. 38:1488-1494.
4. Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
5. Arnold, R. J., J. A. Karty, A. D. Ellington, and J. P. Reilly. 1999. Monitoring the growth of a bacteria culture by MALDI-MS of whole cells. Anal. Chem. 71:1990-1996.
6. Bang, D. D., A. Wedderkopp, K. Pedersen, and M. Madsen. 2002. Rapid PCR using nested primers of the 16S rRNA and the hippuricase (hipO) genes to detect Campylobacter jejuni and Campylobacter coli in environmental samples. Mol. Cell. Probes 16:359-369.
7. Bourke, B., V. L. Chan, and P. Sherman. 1998. Campylobacter upsaliensis: waiting in the wings. Clin. Microbiol. Rev. 11:440-449.
8. Bourke, B., P. M. Sherman, D. Woodward, H. Lior, and V. L. Chan. 1996. Pulsed-field gel electrophoresis indicates genotypic heterogeneity among Campylobacter upsaliensis strains. FEMS Microbiol. Lett. 143:57-61.
9. Brondz, I., and I. Olsen. 1991. Multivariate analyses of cellular fatty acids in Bacteroides, Prevotella, Porphyromonas, Wolinella, and Campylobacter spp. J. Clin. Microbiol. 29:183-189.
10. CAMPYCHECK. 2003. Improved physiological, immunological and molecular tools for the recovery and identification of emerging Campylobacteraceae (CAMPYCHECK): a European Commission research project (QLK1 CT 2002 02201). [Online.] www.campycheck.org.
11. Claydon, M. A., S. N. Davey, V. Edwards-Jones, and D. B. Gordon. 1996. The rapid identification of intact microorganisms using mass spectrometry. Nat. Biotechnol. 14:1584-1586.
12. Demirev, P. A., Y. P. Ho, V. Ryzhov, and C. Fenselau. 1999. Microorganism identification by mass spectrometry and protein database searches. Anal. Chem. 71:2732-2738.
13. Demirev, P. A., J. S. Lin, F. J. Pineda, and C. Fenselau. 2001. Bioinformatics and mass spectrometry for microorganism identification: proteome-wide post-translational modifications and database search algorithms for characterization of intact H. pylori. Anal. Chem. 73:4566-4573.
14. Drlica, K., and J. Rouviere-Yaniv. 1987. Histone-like proteins of bacteria. Microbiol. Rev. 51:301-319.
15. Dronda, F., I. Garcia-Arata, E. Navas, and L. de Rafael. 1998. Meningitis in adults due to Campylobacter fetus subspecies fetus. Clin. Infect. Dis. 27:906-907.
16. Easterling, M. L., C. M. Colangelo, R. A. Scott, and I. J. Amster. 1998. Monitoring protein expression in whole bacterial cells with MALDI time-of-flight mass spectrometry. Anal. Chem. 70:2704-2709.
17. Englen, M. D., and P. J. Fedorka-Cray. 2002. Evaluation of a commercial diagnostic PCR for the identification of Campylobacter jejuni and Campylobacter coli. Lett. Appl. Microbiol. 35:353-356.
18. Fagerquist, C. K., W. G. Miller, L. A. Harden, A. H. Bates, W. H. Vensel, G. Wang, and R. E. Mandrell. 2005. Genomic and proteomic identification of a DNA-binding protein used in the "fingerprinting" of Campylobacter species and strains by MALDI-TOF-MS protein biomarker analysis. Anal. Chem. 77:4897-4907.
19. Fenselau, C., and P. A. Demirev. 2001. Characterization of intact microorganisms by MALDI mass spectrometry. Mass Spectrom. Rev. 20:157-171.
20. Fermer, C., and E. O. Engvall. 1999. Specific PCR identification and differentiation of the thermophilic campylobacters, Campylobacter jejuni, C. coli, C. lari, and C. upsaliensis. J. Clin. Microbiol. 37:3370-3373.
21. Fouts, D. E., E. F. Mongodin, R. E. Mandrell, W. G. Miller, D. A. Rasko, J. Ravel, L. M. Brinkac, R. T. DeBoy, C. T. Parker, S. C. Daugherty, R. J. Dodson, A. S. Durkin, R. Madupu, S. A. Sullivan, J. U. Shetty, M. A. Ayodeji, A. Shvartsbeyn, M. C. Schatz, J. H. Badger, C. M. Fraser, and K. E. Nelson. 2005. Major structural differences and novel potential virulence mechanisms from the genomes of multiple Campylobacter species. PLoS Biol. 3:72-85.
22. Goossens, H., B. Pot, L. Vlaes, C. Van den Borre, R. Van den Abbeele, C. Van Naelten, J. Levy, H. Cogniau, P. Marbehant, J. Verhoef, et al. 1990. Characterization and description of "Campylobacter upsaliensis" isolated from human feces. J. Clin. Microbiol. 28:1039-1046.
23. Goossens, H., L. Vlaes, M. De Boeck, B. Pot, K. Kersters, J. Levy, P. De Mol, J. P. Butzler, and P. Vandamme. 1990. Is "Campylobacter upsaliensis" an unrecognised cause of human diarrhoea? Lancet 335:584-586.
24. Hani, E. K., and V. L. Chan. 1995. Expression and characterization of Campylobacter jejuni benzoylglycine amidohydrolase (hippuricase) gene in Escherichia coli. J. Bacteriol. 177:2396-2402.
25. Harmon, K. M., G. M. Ransom, and I. V. Wesley. 1997. Differentiation of Campylobacter jejuni and Campylobacter coli by multiplex polymerase chain reaction. Mol. Cell. Probes 11:195-200.
26. Henzel, W. J., T. M. Billeci, J. T. Stults, S. C. Wong, C. Grimley, and C. Watanabe. 1993. Identifying proteins from two-dimensional gels by molecular mass searching of peptide fragments in protein sequence databases. Proc. Natl. Acad. Sci. USA 90:5011-5015.
27. Hirel, P. H., M. J. Schmitter, P. Dessen, G. Fayat, and S. Blanquet. 1989. Extent of N-terminal methionine excision from Escherichia coli proteins is governed by the side-chain length of the penultimate amino acid. Proc. Natl. Acad. Sci. USA 86:8247-8251.
28. Holland, R. D., C. R. Duffy, F. Rafii, J. B. Sutherland, T. M. Heinze, C. L. Holder, K. J. Voorhees, and J. O. Lay, Jr. 1999. Identification of bacterial proteins observed in MALDI TOF mass spectra from whole cells. Anal. Chem. 71:3226-3230.
29. Ichiyama, S., S. Hirai, T. Minami, Y. Nishiyama, S. Shimizu, K. Shimokata, and M. Ohta. 1998. Campylobacter fetus subspecies fetus cellulitis associated with bacteremia in debilitated hosts. Clin. Infect. Dis. 27:252-255.
30. Jauk, V. 2003. Phenotypic and genotypic differentiation of Campylobacter spp. isolated from Austrian broiler farms: a comparison. Avian Pathol. 32:33-37.
31. Kirk, R., and M. T. Rowe. 1994. A PCR assay for the detection of Campylobacter jejuni and Campylobacter coli in water. Lett. Appl. Microbiol. 19:301-303.
32. Klena, J. D., C. T. Parker, K. Knibb, J. C. Ibbitt, P. M. L. Devane, S. T. Horn, W. G. Miller, and M. E. Konkel. 2004. Differentiation of Campylobacter coli, Campylobacter jejuni, Campylobacter lari, and Campylobacter upsaliensis using a multiplex PCR developed from the nucleotide sequence of the lipid A gene lpxA. J. Clin. Microbiol. 42:5549-5557.
33. Konkel, M. E., R. T. Marconi, D. J. Mead, and W. Cieplak, Jr. 1994. Cloning and expression of the hup encoding a histone-like protein of Campylobacter jejuni. Gene 146:83-86.
34. Kosunen, T. U., B. E. Bang, and M. Hurme. 1984. Analysis of Campylobacter jejuni antigens with monoclonal antibodies. J. Clin. Microbiol. 19:129-133.
35. Krishnamurthy, T., P. L. Ross, and U. Rajamani. 1996. Detection of pathogenic and non-pathogenic bacteria by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Rapid Commun. Mass Spectrom. 10:883-888.
36. Lamoureux, M., A. MacKay, S. Messier, I. Fliss, B. W. Blais, R. A. Holley, and R. E. Simard. 1997. Detection of Campylobacter jejuni in food and poultry viscera using immunomagnetic separation and microtitre hybridization. J. Appl. Microbiol. 83:641-651.
37. La Scola, B., S. Chambourlier, and P. Bouillot. 1998. Campylobacter fetus ssp. fetus brain abscess. J. Infect. 37:309-310.
38. Lastovica, A., E. Le Roux, R. Warren, and H. Klump. 1993. Clinical isolates of Campylobacter mucosalis. J. Clin. Microbiol. 31:2835-2836.
39. Lastovica, A. J., and E. le Roux. 2000. Efficient isolation of campylobacteria from stools. J. Clin. Microbiol. 38:2798-2799.
40. Lentzsch, P., B. Rieksneuwohner, L. H. Wieler, H. Hotzel, and I. Moser. 2004. High-resolution genotyping of Campylobacter upsaliensis strains originating from three continents. J. Clin. Microbiol. 42:3441-3448.
41. le Roux, E., and A. J. Lastovica. 1998. The Cape Town Protocol: how to isolate the most campylobacters for your dollar, pound, franc, yen, etc., p. 30-33. In A. J. Lastovica, D. G. Newell, and E. E. Lastovica (ed.), Campylobacter, Helicobacter and related organisms, 9th international workshop. Institute of Child Health, University of Cape Town, Cape Town, South Africa.
42. Linton, D., F. E. Dewhirst, J. P. Clewley, R. J. Owen, A. P. Burnens, and J. Stanley. 1994. Two types of 16S rRNA gene are found in Campylobacter helveticus: analysis, applications and characterization of the intervening sequence found in some strains. Microbiology 140:847-855.
43. Linton, D., A. J. Lawson, R. J. Owen, and J. Stanley. 1997. PCR detection, identification to species level, and fingerprinting of Campylobacter jejuni and Campylobacter coli direct from diarrheic samples. J. Clin. Microbiol. 35:2568-2572.
44. Macuch, P. J., and A. C. Tanner. 2000. Campylobacter species in health, gingivitis, and periodontitis. J. Dent. Res. 79:785-792.
45. Mandrell, R. E., A. H. Bates, and D. L. Brandon. May 2002. Monoclonal antibodies against Campylobacter jejuni and Campylobacter coli outer membrane antigens. U.S. patent 6,395,879 B1.
46. Mandrell, R. E., A. J. Lesse, J. V. Sugai, M. Shero, J. M. Griffiss, J. A. Cole, N. J. Parsons, H. Smith, S. A. Morse, and M. A. Apicella. 1990. In vitro and in vivo modification of Neisseria gonorrhoeae lipooligosaccharide epitope structure by sialylation. J. Exp. Med. 171:1649-1664.
47. Martinot, M., B. Jaulhac, R. Moog, S. De Martino, P. Kehrli, H. Monteil, and Y. Piemont. 2001. Campylobacter lari bacteremia. Clin. Microbiol. Infect. 7:96-97.
48. Matsheka, M. I., A. J. Lastovica, and B. G. Elisha. 2001. Molecular identification of Campylobacter concisus. J. Clin. Microbiol. 39:3684-3689.
49. Mead, P. S., L. Slutsker, V. Dietz, L. F. McCaig, J. S. Bresee, C. Shapiro, P. M. Griffin, and R. V. Tauxe. 1999. Food-related illness and death in the United States. Emerg. Infect. Dis. 5:607-625.
50. Miller, W. G., A. H. Bates, S. T. Horn, M. T. Brandl, M. R. Wachtel, and R. E. Mandrell. 2000. Detection on surfaces and in Caco-2 cells of Campylobacter jejuni cells transformed with new gfp, yfp, and cfp marker plasmids. Appl. Environ. Microbiol. 66:5426-5436.
51. Miller, W. G., and R. E. Mandrell. 2005. Campylobacter in the food and water supply: prevalence, outbreaks, isolation, and detection, p. 101-163. In J. Ketley and M. E. Konkel (ed.), Campylobacter jejuni: new perspectives in molecular and cellular biology. Horizon Scientific Press, Norfolk, United Kingdom.
52. Miller, W. G., S. L. On, G. Wang, S. Fontanoz, A. J. Lastovica, and R. E. Mandrell. 2005. Extended multilocus sequence typing system for Campylobacter coli, C. lari, C. upsaliensis, and C. helveticus. J. Clin. Microbiol. 43:2315-2329.
53. Moniero, A., X. Corbella, J. A. Lopez, M. Santin, and I. H. Ballon. 1997. Campylobacter fetus-associated aneurysms: report of a case involving the popliteal artery and review of the literature. Clin. Infect. Dis. 24:1019-1021.
54. Moser, I., B. Rieksneuwohner, P. Lentzsch, P. Schwerk, and L. H. Wieler. 2001. Genomic heterogeneity and O-antigenic diversity of Campylobacter upsaliensis and Campylobacter helveticus strains isolated from dogs and cats in Germany. J. Clin. Microbiol. 39:2548-2557.
55. Nachamkin, I., B. M. Allos, and T. Ho. 1998. Campylobacter species and Guillain-Barré syndrome. Clin. Microbiol. Rev. 11:555-567.
56. Newell, D. G. 1986. Monoclonal antibodies directed against the flagella of Campylobacter jejuni: cross-reacting and serotypic specificity and potential use in diagnosis. J. Hyg. (London) 96:377-384.
57. Owen, R. J., and J. Hernandez. 1990. Genotypic variation in "Campylobacter upsaliensis" from blood and faeces of patients in different countries. FEMS Microbiol. Lett. 60:5-10.
58. Parkhill, J., B. W. Wren, K. Mungall, J. M. Ketley, C. Churcher, D. Basham, T. Chillingworth, R. M. Davies, T. Feltwell, S. Holroyd, K. Jagels, A. V. Karlyshev, S. Moule, M. J. Pallen, C. W. Penn, M. A. Quail, M. A. Rajandream, K. M. Rutherford, A. H. van Vliet, S. Whitehead, and B. G. Barrell. 2000. The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences. Nature 403:665-668.
59. Rasmussen, H. N., J. E. Olsen, K. Jorgensen, and O. F. Rasmussen. 1996. Detection of Campylobacter jejuni and Camp, coli in chicken faecal samples by PCR. Lett. Appl. Microbiol. 23:363-366.
60. Simor, A. E., and L. Wilcox. 1987. Enteritis associated with Campylobacter landis. J. Clin. Microbiol. 25:10-12.
61. Smith, D. B. 1968. Amino acid sequences of some tryptic peptides from the beta-chain of horse hemoglobin. Can. J. Biochem. 46:825-843.
62. Soderstrom, C., C. Schalen, and M. Walder. 1991. Septicaemia caused by unusual Campylobacter species (C. laridis and C. mucosalis). Scand. J. Infect. Dis. 23:369-371.
63. Steinbrueckner, B., G. Haerter, K. Pelz, and M. Kist. 1999. Routine identification of Campylobacter jejuni and Campylobacter coli from human stool samples. FEMS Microbiol. Lett. 179:227-232.
64. Tauxe, R. V., C. M. Patton, P. Edmonds, T. J. Barrell, D. J. Brenner, and P. A. Blake. 1985. Illness associated with Campylobacter laridis, a newly recognized Campylobacter species. J. Clin. Microbiol. 21:222-225.
65. The Institute for Genomic Research. 2004. TIGR microbial database, unfinished microbial genomes. [Online.] http://www.tigr.org.
66. Vandamme, P., E. Falsen, B. Pot, B. Hoste, K. Kersters, and J. De Ley. 1989. Identification of EF group 22 campylobacters from gastroenteritis cases as Campylobacter concisus. J. Clin. Microbiol. 27:1775-1781.
67. Vandamme, P., B. Pot, and K. Kersters. 1991. Differentiation of campylobacters and Campylobacter-like organisms by numerical analysis of one-dimensional electrophoretic protein patterns. Syst. Appl. Microbiol. 14:57-66.
68. van Doorn, L. J., A. Verschuuren-van Haperen, A. Burnens, M. Huysmans, P. Vandamme, B. A. Giesendorf, M. J. Blaser, and W. G. Quint 1999. Rapid identification of thermotolerant Campylobacter jejuni, Campylobacter coli, Campylobacter lari, and Campylobacter upsaliensis from various geographic locations by a GTPase-based PCR-reverse hybridization assay. J. Clin. Microbiol. 37:1790-1796.
69. Volokhov, D., V. Chizhikov, K. Chumakov, and A. Rasooly. 2003. Microarray-based identification of thermophilic Campylobacter jejuni, C. coli, C. lari, and C. upsaliensis. J. Clin. Microbiol. 41:4071-4080.
70. Wall, D. B., D. M. Lubman, and S. J. Flynn. 1999. Rapid profiling of induced proteins in bacteria using MALDI-TOF mass spectrometric detection of nonporous RP HPLC-separated whole cell lysates. Anal. Chem. 71:3894-3900.
71. Wang, G., C. G. Clark, T. M. Taylor, C. Pucknell, C. Barton, L. Price, D. L. Woodward, and F. G. Rodgers. 2002. Colony multiplex PCR assay for identification and differentiation of Campylobacter jejuni, C. coli, C. lari, C. upsaliensis, and C. fetus subsp. fetus. J. Clin. Microbiol. 40:4744-4747.
72. White, L. A., and D. S. Kellogg. 1965. Neisseria gonorrhoeae identification in direct smears by a fluorescent antibody-counterstain method. Appl. Microbiol. 13:171.
73. Winkler, M. A., J. Uher, and S. Cepa. 1999. Direct analysis and identification of Helicobacter and Campylobacter species by MALDI-TOF mass spectrometry. Anal. Chem. 71:3416-3419.