Microorganism identification by mass spectrometry and protein database searches

Analytical Chemistry

Volumn 71, Issue 14, 1999, Pages 2732-2738

  Demirev, Plamen A ^a   Ho, Yen Peng ^a   Ryzhov, Victor ^a   Fenselau, Catherine ^a  

^a Bldg 142   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; AMINO ACID SEQUENCE; ANALYTIC METHOD; ARTICLE; BACTERIUM IDENTIFICATION; DATA BASE; MASS SPECTROMETRY; MICROORGANISM; PROTEIN ANALYSIS; REPRODUCIBILITY;

BACILLUS SUBTILIS; DATABASES, FACTUAL; ESCHERICHIA COLI; INTERNET; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

EID: 0033565886     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac990165u     Document Type: Article

References (38)

1. National Center for Biotechnology Information (NIH), http:// www.ncbi.nlm.nih.gov/Entrez/Genome/org.html.
2. The C. elegans Sequencing Consortium. Science 1998, 282, 2012-2018.
3. Arigoni, F.; Talabot, F.; Peitsch, M.; Edgerton, M.; Meldrum, E.; Allet, E.; Fish, R.; Jamotte, Th.; Curchod, M.-L.; Loferer, H. Nat. Biotechnol. 1998, 16, 851-856.
4. Bioinformatics: A Practical Guide to the Analysis of Genes and Proteins; Baxevanis, A., Oulette, B., Eds.; Methods of Biochemical Analysis 39; Wiley-Interscience: New York, 1998.
5. Roepstorff, P. Curr. Opin. Biotechnol. 1997, 8, 6-13.
6. Humphery-Smith, I.; Blackstock, W. J. Protein Chem. 1997, 16, 537-544.
7. James, P. Biochem. Biophys. Res. Commun. 1997, 231, 1-6.
8. Kuster, B.; Mann, M. Curr. Opin. Struct. Biol. 1998, 8, 393-400.
9. Henzel, W.; Billeci, T.; Stults, J.; Wong, S.; Grimley, C.; Watanabe, C. Proc. Natl. Acad. Sci. U.S.A. 1993, 90, 5011-5015.
10. Mann, M.; Hojrup, P.; Roepstorff, P. Biol. Mass Spectrom. 1993, 22, 338-345.
11. Pappen, D.; Hojrup, P.; Bleasby, A. Curr. Biol. 1993, 3, 327-332.
12. James, P.; Quadroni, M.; Carafoli, E.; Gonnet, G. Biochem. Biophys. Res. Commun. 1993, 195, 58-64.
13. Yates, J. R., III; McCormack, A.; Eng, J. Anal. Chem. 1996, 68, 534A-540A.
14. Fenyö, D.; Qin, J.; Chait, B. Electrophoresis 1998, 19, 998-1005.
15. (a) prospector.ucsf.edu www.proteometrics.com.
16. (b) www.mann.embl-heidelberg.de/Services/PeptideSearch.
17. (c) cbrg.inf.ethz.ch/MassSearch.html expasy.hcuge.ch.
18. (d) www.seqnet.dl.ac.uk/mowse.html.
19. Jensen, O.; Podtelejnikov, A.; Mann, M. Rapid Commun. Mass Spectrom. 1996, 10, 1371-1378.
20. Mortz, E.; O'Connor, P.; Roepstorff, P.; Kelleher, N.; Wood, T.; McLafferty, F.; Mann, M. Proc. Natl. Acad. Sci. U.S.A. 1996, 93, 8264-8267.
21. Yates, J. R., III; Eng, J. Use of Mass Spectrometry Fragmentation Patterns of Peptides to Identify Amino Acid Sequences in Databases. U.S. Patent No. 553897, July 23, 1996.
22. Anhalt, J. P.; Fenselau, C. Anal. Chem. 1975, 47, 219-225.
23. Heller, D.; Fenselau, C.; Cotter, R.; Demirev, P.; Olthoff, J.; Honovich, J.; Uy, M.; Tanaka, T.; Kishimoto, Y. Biochem. Biophys. Res. Commun. 1987, 142, 194-199.
24. Mass Spectrometry for the Characterization of Microorganisms; Fenselau, C., Ed.; ACS Symposium Series 541; American Chemical Society: Washington, DC, 1994.
25. Cain, T.; Lubman, D.; Weber, W., Jr. Rapid Commun. Mass Spectrom. 1994, 8, 1026-1030.
26. Claydon, M.; Davey, S.; Edwards-Jones, V.; Gordon, D. Nat. Biotechnol. 1996, 14, 1584-1586.
27. Holland, R.; Wilkes, J.; Rafii, F.; Sutherland, J.; Person, C.; Voorhees, K; Lay, J. Rapid Commun. Mass Spectrom. 1996, 10, 1227-1232.
28. Krishnamurthy, T.; Ross, P.; Rajamani, U. Rapid Commun. Mass Spectrom. 1996, 10, 883-888.
29. Arnold, R.; Reilly, J. Rapid Commun. Mass Spectrom. 1998, 12, 630-636.
30. Welham, K.; Domin, M.; Scannell, D.; Cohen, E.; Ashton, D. Rapid Commun. Mass Spectrom. 1998, 12, 176-180.
31. Haag, A.; Taylor, S.; Johnston, K.; Cole, R. J. Mass Spectrom. 1998, 33, 750-756.
32. Wang, Z.; Russon, L.; Li, L.; Roser, D.; Long, S. R. Rapid Commun. Mass Spectrom. 1998, 12, 456-464.
33. Dai, Y.; Li, L.; Roser, D.; Long, S. R. Rapid Commun. Mass Spectrom. 1999, 13, 73-78.
34. Arnold, R.; Reilly, J. A Study of Bacterial Culture Growth by MALDI-MS of Whole Cells; Proceedings of the 46th ASMS Conference on Mass Spectrometry and Allied Topics, Orlando, FL, May 31-June 4, 1998; p 180.
35. Birmingham, J.; Demirev, P.; Ho, Y.-P.; Thomas, J.; Bryden, W.; Fenselau, C. Rapid Commun. Mass Spectrom. 1999, 13, 604-606.
36. Chapman, J. Computers in Mass Spectrometry; Academic Press: London, 1978.
37. McLafferty, F.; Turecek, F. Interpretation of Mass Spectra, 4th ed.; University Science Books: Mill Valley, CA, 1993.
38. Das, S.; Yu, L.; Gaitatzes, C.; Roger, R.; Freeman, J.; Blenkowska, J.; Adams, R. M.; Smith, T. F. Nature 1997, 385, 29-30.