-
1
-
-
0020640158
-
Construction of high copy yeast vectors using 2-micron circle sequences
-
Broach, J. R. 1983. Construction of high copy yeast vectors using 2-micron circle sequences. Methods Enzymol. 101:307-325.
-
(1983)
Methods Enzymol.
, vol.101
, pp. 307-325
-
-
Broach, J.R.1
-
2
-
-
0000560681
-
Circular DNA plasmids of yeast
-
Cold Spring Harbor Press, Cold Spring Harbor, N. Y.
-
Broach, J. R., and F. C. Volkert. 1991. Circular DNA plasmids of yeast, p. 297-331. In The molecular and cellular biology of the yeast Saccharomyces cerevisiae: genome dynamics, protein synthesis and energetics. Cold Spring Harbor Press, Cold Spring Harbor, N. Y.
-
(1991)
The Molecular and Cellular Biology of the Yeast Saccharomyces Cerevisiae: Genome Dynamics, Protein Synthesis and Energetics
, pp. 297-331
-
-
Broach, J.R.1
Volkert, F.C.2
-
3
-
-
0029984469
-
Tetrahymena histone acetyltransferase A: A homologue to yeast Gcn5p linking histone acetylation to gene activation
-
Brownell, J. E., J. Zhou, T. Ranalli, R. Kobayashi, D. G. Edmondson, S. Y. Roth, and C. D. Allis. 1996. Tetrahymena histone acetyltransferase A: a homologue to yeast Gcn5p linking histone acetylation to gene activation. Cell 84:843-851.
-
(1996)
Cell
, vol.84
, pp. 843-851
-
-
Brownell, J.E.1
Zhou, J.2
Ranalli, T.3
Kobayashi, R.4
Edmondson, D.G.5
Roth, S.Y.6
Allis, C.D.7
-
4
-
-
0023955508
-
Changes in histone gene dosage alter transcription in yeast
-
Clark-Adams, C. D., D. Norris, M. A. Osley, J. S. Fassler, and F. Winston. 1988. Changes in histone gene dosage alter transcription in yeast. Genes Dev. 2:150-159.
-
(1988)
Genes Dev.
, vol.2
, pp. 150-159
-
-
Clark-Adams, C.D.1
Norris, D.2
Osley, M.A.3
Fassler, J.S.4
Winston, F.5
-
5
-
-
0025098691
-
The CCR4 gene from Saccharomyces cerevisiae is required for both non-fermentative and spt-mediated gene expression
-
Denis, C. L., and T. Malvar. 1990. The CCR4 gene from Saccharomyces cerevisiae is required for both non-fermentative and spt-mediated gene expression. Genetics 124:283-291.
-
(1990)
Genetics
, vol.124
, pp. 283-291
-
-
Denis, C.L.1
Malvar, T.2
-
6
-
-
0033166338
-
A role for transcriptional repressors in targeting the yeast SWI/SNF complex
-
Dimova, D., Z. Nackerdien, S. Furgeson, S. Eguchi, and M. A. Osley. 1999. A role for transcriptional repressors in targeting the yeast SWI/SNF complex. Mol. Cell 4:75-83.
-
(1999)
Mol. Cell
, vol.4
, pp. 75-83
-
-
Dimova, D.1
Nackerdien, Z.2
Furgeson, S.3
Eguchi, S.4
Osley, M.A.5
-
7
-
-
0027932770
-
SPT10 and SPT21 are required for transcription of particular histone genes in Saccharomyces cerevisiae
-
Dollard, C., S. L. Ricupero-Hovasse, G. Natsoulis, J. D. Boeke, and F. Winston. 1994. SPT10 and SPT21 are required for transcription of particular histone genes in Saccharomyces cerevisiae. Mol. Cell. Biol. 14:5223-5228.
-
(1994)
Mol. Cell. Biol.
, vol.14
, pp. 5223-5228
-
-
Dollard, C.1
Ricupero-Hovasse, S.L.2
Natsoulis, G.3
Boeke, J.D.4
Winston, F.5
-
8
-
-
0023955856
-
Isolation and analysis of a novel class of suppressor of Ty insertion mutations in Saccharomyces cerevisiae
-
Fassler, J. S., and F. Winston. 1988. Isolation and analysis of a novel class of suppressor of Ty insertion mutations in Saccharomyces cerevisiae. Genetics 118:203-212.
-
(1988)
Genetics
, vol.118
, pp. 203-212
-
-
Fassler, J.S.1
Winston, F.2
-
9
-
-
0026480852
-
Histone H3 transcription in Saccharomyces cerevisiae is controlled by multiple cell cycle activation sites and a constitutive negative regulatory element
-
Freeman, K. B., L. R. Karns, K. A. Lutz, and M. M. Smith. 1992. Histone H3 transcription in Saccharomyces cerevisiae is controlled by multiple cell cycle activation sites and a constitutive negative regulatory element. Mol. Cell. Biol. 12:5455-5463.
-
(1992)
Mol. Cell. Biol.
, vol.12
, pp. 5455-5463
-
-
Freeman, K.B.1
Karns, L.R.2
Lutz, K.A.3
Smith, M.M.4
-
10
-
-
2542584654
-
Detection of functional DNA motifs via statistical over-representation
-
Frith, M. C., Y. Fu, L. Yu, F. Chen, U. Hansen, and Z. Weng. 2004. Detection of functional DNA motifs via statistical over-representation. Nucleic Acids Res. 32:1372-1381.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1372-1381
-
-
Frith, M.C.1
Fu, Y.2
Yu, L.3
Chen, F.4
Hansen, U.5
Weng, Z.6
-
11
-
-
1242264319
-
Finding functional sequence elements by multiple local alignment
-
Frith, M. C., U. Hansen, J. L. Spouge, and Z. Weng. 2004. Finding functional sequence elements by multiple local alignment. Nucleic Acids Res. 32:189-200.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 189-200
-
-
Frith, M.C.1
Hansen, U.2
Spouge, J.L.3
Weng, Z.4
-
12
-
-
0032080848
-
The SAGA unfolds: Convergence of transcription regulators in chromatin-modifying complexes
-
Grant, P. A., D. E. Sterner, L. J. Duggan, J. L. Workman, and S. L. Berger. 1998. The SAGA unfolds: convergence of transcription regulators in chromatin-modifying complexes. Trends Cell Biol. 8:193-197.
-
(1998)
Trends Cell Biol.
, vol.8
, pp. 193-197
-
-
Grant, P.A.1
Sterner, D.E.2
Duggan, L.J.3
Workman, J.L.4
Berger, S.L.5
-
13
-
-
0024261583
-
Nucleosome loss activates yeast downstream promoters in vivo
-
Han, M., and M. Grunstein. 1988. Nucleosome loss activates yeast downstream promoters in vivo. Cell 55:1137-1145.
-
(1988)
Cell
, vol.55
, pp. 1137-1145
-
-
Han, M.1
Grunstein, M.2
-
14
-
-
0018582195
-
Isolation of yeast histone genes H2A and H2B
-
Hereford, L., K. Fahrner, J. Woolford, M. Rosbash, and D. B. Kaback. 1979. Isolation of yeast histone genes H2A and H2B. Cell 18:1261-1271.
-
(1979)
Cell
, vol.18
, pp. 1261-1271
-
-
Hereford, L.1
Fahrner, K.2
Woolford, J.3
Rosbash, M.4
Kaback, D.B.5
-
15
-
-
0346993669
-
Spt10-dependent transcriptional activation in Saccharomyces cerevisiae requires both the Spt10 acetyltransferase domain and Spt21
-
Hess, D., B. Liu, N. R. Roan, R. Sternglanz, and F. Winston. 2004. Spt10-dependent transcriptional activation in Saccharomyces cerevisiae requires both the Spt10 acetyltransferase domain and Spt21. Mol. Cell. Biol. 24:135-143.
-
(2004)
Mol. Cell. Biol.
, vol.24
, pp. 135-143
-
-
Hess, D.1
Liu, B.2
Roan, N.R.3
Sternglanz, R.4
Winston, F.5
-
16
-
-
20444420541
-
Evidence that Spt10 and Spt21 of S. cerevisiae play distinct roles in vivo and functionally interact with MCB-binding factor, SCB-binding factor, and Snf1
-
Hess, D., and F. Winston. 2005. Evidence that Spt10 and Spt21 of S. cerevisiae play distinct roles in vivo and functionally interact with MCB-binding factor, SCB-binding factor, and Snf1. Genetics 170:87-94.
-
(2005)
Genetics
, vol.170
, pp. 87-94
-
-
Hess, D.1
Winston, F.2
-
17
-
-
0034628901
-
Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae
-
Hughes, J. D., P. W. Estep, S. Tavazoie, and G. M. Church. 2000. Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae. J. Mol. Biol. 296:1205-1214.
-
(2000)
J. Mol. Biol.
, vol.296
, pp. 1205-1214
-
-
Hughes, J.D.1
Estep, P.W.2
Tavazoie, S.3
Church, G.M.4
-
18
-
-
0025974219
-
Tackling the protease problem in Saccharomyces cerevisiae
-
Jones, E. W. 1991. Tackling the protease problem in Saccharomyces cerevisiae. Methods Enzymol. 194:428-453.
-
(1991)
Methods Enzymol.
, vol.194
, pp. 428-453
-
-
Jones, E.W.1
-
19
-
-
0041828953
-
Transcription elongation factors repress transcription initiation from cryptic sites
-
Kaplan, C. D., L. Laprade, and F. Winston. 2003. Transcription elongation factors repress transcription initiation from cryptic sites. Science 301:1096-1099.
-
(2003)
Science
, vol.301
, pp. 1096-1099
-
-
Kaplan, C.D.1
Laprade, L.2
Winston, F.3
-
20
-
-
0034636554
-
ATF-2 has intrinsic histone acetyltransferase activity which is modulated by phosphorylation
-
Kawasaki, H., L. Schiltz, R. Chiu, K. Itakura, K. Taira, Y. Nakatani, and K. K. Yokoyama. 2000. ATF-2 has intrinsic histone acetyltransferase activity which is modulated by phosphorylation. Nature 405:195-200.
-
(2000)
Nature
, vol.405
, pp. 195-200
-
-
Kawasaki, H.1
Schiltz, L.2
Chiu, R.3
Itakura, K.4
Taira, K.5
Nakatani, Y.6
Yokoyama, K.K.7
-
21
-
-
0037180557
-
SWI/SNF-dependent long-range remodeling of yeast HIS3 chromatin
-
Kim, Y., and D. J. Clark. 2002. SWI/SNF-dependent long-range remodeling of yeast HIS3 chromatin. Proc. Natl. Acad. Sci. USA 99:15381-15386.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 15381-15386
-
-
Kim, Y.1
Clark, D.J.2
-
22
-
-
0037524702
-
The Paf1 complex is required for histone H3 methylation by COMPASS and Dot1p: Linking transcriptional elongation to histone methylation
-
Krogan, N. J., J. Dover, A. Wood, J. Schneider, J. Heidt, M. A. Boateng, O. W. Ryan, A. Golshani, M. Johnston, J. F. Greenblatt, and A. Shilatifard. 2003. The Paf1 complex is required for histone H3 methylation by COMPASS and Dot1p: linking transcriptional elongation to histone methylation. Mol. Cell 11:721-729.
-
(2003)
Mol. Cell
, vol.11
, pp. 721-729
-
-
Krogan, N.J.1
Dover, J.2
Wood, A.3
Schneider, J.4
Heidt, J.5
Boateng, M.A.6
Ryan, O.W.7
Golshani, A.8
Johnston, M.9
Greenblatt, J.F.10
Shilatifard, A.11
-
23
-
-
12844269263
-
Histone H2A and Spt10 cooperate to regulate induction and autoregulation of the CUP1 metallothionein
-
Kuo, H. C., J. D. Moore, and J. E. Krebs. 2005. Histone H2A and Spt10 cooperate to regulate induction and autoregulation of the CUP1 metallothionein. J. Biol. Chem. 280:104-111.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 104-111
-
-
Kuo, H.C.1
Moore, J.D.2
Krebs, J.E.3
-
24
-
-
0001262663
-
Redundant roles for the TFIID and SAGA complexes in global transcription
-
Lee, T. I., H. C. Causton, F. C. Holstege, W. C. Shen, N. Hannett, E. G. Jennings, F. Winston, M. R. Green, and R. A. Young. 2000. Redundant roles for the TFIID and SAGA complexes in global transcription. Nature 405:701-704.
-
(2000)
Nature
, vol.405
, pp. 701-704
-
-
Lee, T.I.1
Causton, H.C.2
Holstege, F.C.3
Shen, W.C.4
Hannett, N.5
Jennings, E.G.6
Winston, F.7
Green, M.R.8
Young, R.A.9
-
25
-
-
1842411320
-
Crystal structure of the nucleosome core particle at 2.8Å resolution
-
Luger, K., A. W. Mäder, R. K. Richmond, D. F. Sargent, and T. M. Richmond. 1997. Crystal structure of the nucleosome core particle at 2.8Å resolution. Nature 389:251-260.
-
(1997)
Nature
, vol.389
, pp. 251-260
-
-
Luger, K.1
Mäder, A.W.2
Richmond, R.K.3
Sargent, D.F.4
Richmond, T.M.5
-
26
-
-
1642321066
-
Histone fold protein Dls1p is required for Isw2-dependent chromatin remodeling in vivo
-
McConnell, A. D., M. E. Gelbart, and T. Tsukiyama. 2004. Histone fold protein Dls1p is required for Isw2-dependent chromatin remodeling in vivo. Mol. Cell. Biol. 24:2605-2613.
-
(2004)
Mol. Cell. Biol.
, vol.24
, pp. 2605-2613
-
-
McConnell, A.D.1
Gelbart, M.E.2
Tsukiyama, T.3
-
27
-
-
0026321729
-
The products of the SPT10 and SPT21 genes of Saccharomyces cerevisiae increase the amplitude of transcriptional regulation at a large number of unlinked loci
-
Natsoulis, G., C. Dollard, F. Winston, and J. D. Boeke. 1991. The products of the SPT10 and SPT21 genes of Saccharomyces cerevisiae increase the amplitude of transcriptional regulation at a large number of unlinked loci. New Biol. 3:1249-1259.
-
(1991)
New Biol.
, vol.3
, pp. 1249-1259
-
-
Natsoulis, G.1
Dollard, C.2
Winston, F.3
Boeke, J.D.4
-
28
-
-
0028047615
-
The SPT10 and SPT21 genes of Saccharomyces cerevisiae
-
Natsoulis, G., F. Winston, and J. D. Boeke. 1994. The SPT10 and SPT21 genes of Saccharomyces cerevisiae. Genetics 136:93-105.
-
(1994)
Genetics
, vol.136
, pp. 93-105
-
-
Natsoulis, G.1
Winston, F.2
Boeke, J.D.3
-
29
-
-
0030954208
-
GCN5-related histone N-acetyltransferases belong to a diverse superfamily that includes the yeast SPT10 protein
-
Neuwald, A. F., and D. Landsman. 1997. GCN5-related histone N-acetyltransferases belong to a diverse superfamily that includes the yeast SPT10 protein. Trends Biochem. Sci. 22:154-155.
-
(1997)
Trends Biochem. Sci.
, vol.22
, pp. 154-155
-
-
Neuwald, A.F.1
Landsman, D.2
-
30
-
-
0023432015
-
The two gene pairs encoding H2A and H2B play different roles in the Saccharomyces cerevisiae life cycle
-
Norris, D., and M. A. Osley. 1987. The two gene pairs encoding H2A and H2B play different roles in the Saccharomyces cerevisiae life cycle. Mol. Cell. Biol. 7:3473-3481.
-
(1987)
Mol. Cell. Biol.
, vol.7
, pp. 3473-3481
-
-
Norris, D.1
Osley, M.A.2
-
31
-
-
0025863511
-
The regulation of histone synthesis in the cell cycle
-
Osley, M. A. 1991. The regulation of histone synthesis in the cell cycle. Annu. Rev. Biochem. 60:827-861.
-
(1991)
Annu. Rev. Biochem.
, vol.60
, pp. 827-861
-
-
Osley, M.A.1
-
32
-
-
0023055514
-
Identification of sequences in a yeast histone promoter involved in periodic transcription
-
Osley, M. A., J. Gould, S. Kim, M. Kane, and L. Hereford. 1986. Identification of sequences in a yeast histone promoter involved in periodic transcription. Cell 45:537-544.
-
(1986)
Cell
, vol.45
, pp. 537-544
-
-
Osley, M.A.1
Gould, J.2
Kim, S.3
Kane, M.4
Hereford, L.5
-
33
-
-
0036256125
-
Chromatin remodeling enzymes: Taming the machines
-
Peterson, C. L. 2002. Chromatin remodeling enzymes: taming the machines. EMBO Rep. 3:319-322.
-
(2002)
EMBO Rep.
, vol.3
, pp. 319-322
-
-
Peterson, C.L.1
-
34
-
-
0027361956
-
Mutations that suppress the deletion of an upstream activating sequence in yeast: Involvement of a protein kinase and histone H3 in repressing transcription in vivo
-
Prelich, G., and F. Winston. 1993. Mutations that suppress the deletion of an upstream activating sequence in yeast: involvement of a protein kinase and histone H3 in repressing transcription in vivo. Genetics 135:665-676.
-
(1993)
Genetics
, vol.135
, pp. 665-676
-
-
Prelich, G.1
Winston, F.2
-
35
-
-
0035860797
-
DNA sequence plays a major role in determining nucleosome positions in yeast CUP1 chromatin
-
Shen, C.-H, and D. J. Clark. 2001. DNA sequence plays a major role in determining nucleosome positions in yeast CUP1 chromatin. J. Biol. Chem. 276:35209-35216.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 35209-35216
-
-
Shen, C.-H.1
Clark, D.J.2
-
36
-
-
0035168506
-
Remodeling of yeast CUP1 chromatin involves activator-dependent repositioning of nucleosomes over the entire gene and flanking sequences
-
Shen, C.-H., B. P. Leblanc, J. A. Alfieri, and D. J. Clark. 2001. Remodeling of yeast CUP1 chromatin involves activator-dependent repositioning of nucleosomes over the entire gene and flanking sequences. Mol. Cell. Biol. 21:534-547.
-
(2001)
Mol. Cell. Biol.
, vol.21
, pp. 534-547
-
-
Shen, C.-H.1
Leblanc, B.P.2
Alfieri, J.A.3
Clark, D.J.4
-
37
-
-
0036724502
-
Targeted histone acetylation at the yeast CUP1 promoter requires the transcriptional activator, the TATA boxes and the putative histone acetylase encoded by SPT10
-
Shen, C.-H., B. P. Leblanc, C. Neal, R. Akhavan, and D. J. Clark. 2002. Targeted histone acetylation at the yeast CUP1 promoter requires the transcriptional activator, the TATA boxes and the putative histone acetylase encoded by SPT10. Mol. Cell. Biol. 22:6406-6416.
-
(2002)
Mol. Cell. Biol.
, vol.22
, pp. 6406-6416
-
-
Shen, C.-H.1
Leblanc, B.P.2
Neal, C.3
Akhavan, R.4
Clark, D.J.5
-
38
-
-
0025998566
-
Histone regulatory (hir) mutations suppress δ insertion alleles in Saccharomyces cerevisiae
-
Sherwood, P. W., and M. A. Osley. 1991. Histone regulatory (hir) mutations suppress δ insertion alleles in Saccharomyces cerevisiae. Genetics 128:729-738.
-
(1991)
Genetics
, vol.128
, pp. 729-738
-
-
Sherwood, P.W.1
Osley, M.A.2
-
39
-
-
0022234831
-
Chromatin reconstituted from tandemly repeated cloned DNA fragments and core histones: A model system for study of higher order structure
-
Simpson, R. T., F. Thoma, and J. M. Brubaker. 1985. Chromatin reconstituted from tandemly repeated cloned DNA fragments and core histones: a model system for study of higher order structure. Cell 42:799-808.
-
(1985)
Cell
, vol.42
, pp. 799-808
-
-
Simpson, R.T.1
Thoma, F.2
Brubaker, J.M.3
-
40
-
-
0020510289
-
DNA sequences of yeast H3 and H4 histone genes from two non-allelic gene sets encode identical H3 and H4 proteins
-
Smith, M. M., and O. S. Andrésson. 1983. DNA sequences of yeast H3 and H4 histone genes from two non-allelic gene sets encode identical H3 and H4 proteins. J. Mol. Biol. 169:663-690.
-
(1983)
J. Mol. Biol.
, vol.169
, pp. 663-690
-
-
Smith, M.M.1
Andrésson, O.S.2
-
41
-
-
0034610814
-
The language of covalent histone modifications
-
Strahl, B. D., and C. D. Allis. 2000. The language of covalent histone modifications. Nature 403:41-45.
-
(2000)
Nature
, vol.403
, pp. 41-45
-
-
Strahl, B.D.1
Allis, C.D.2
-
42
-
-
0017115264
-
Yeast chromatin structure
-
Thomas, J. O., and V. Furber. 1976. Yeast chromatin structure. FEBS Lett. 66:274-280.
-
(1976)
FEBS Lett.
, vol.66
, pp. 274-280
-
-
Thomas, J.O.1
Furber, V.2
-
43
-
-
0043123063
-
Gibbs Recursive Sampler: Finding transcription factor binding sites
-
Thompson, W., E. C. Rouchka, and C. E. Lawrence. 2003. Gibbs Recursive Sampler: finding transcription factor binding sites. Nucleic Acids Res. 31:3580-3585.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3580-3585
-
-
Thompson, W.1
Rouchka, E.C.2
Lawrence, C.E.3
-
44
-
-
0032450775
-
The SAGA of Spt proteins and transcriptional analysis in yeast: Past, present and future
-
Winston, F., and P. Sudarsanam. 1998. The SAGA of Spt proteins and transcriptional analysis in yeast: past, present and future. Cold Spring Harbor Symp. Quant. Biol. 63:553-561.
-
(1998)
Cold Spring Harbor Symp. Quant. Biol.
, vol.63
, pp. 553-561
-
-
Winston, F.1
Sudarsanam, P.2
-
45
-
-
0033604609
-
Chromosomal landscape of nucleosome-dependent gene expression and silencing in yeast
-
Wyrick, J. J., F. C. P. Holstege, E. G. Jennings, H. C. Causton, D. Shore, M. Grunstein, E. S. Lander, and R. A. Young. 1999. Chromosomal landscape of nucleosome-dependent gene expression and silencing in yeast. Nature 402:418-421.
-
(1999)
Nature
, vol.402
, pp. 418-421
-
-
Wyrick, J.J.1
Holstege, F.C.P.2
Jennings, E.G.3
Causton, H.C.4
Shore, D.5
Grunstein, M.6
Lander, E.S.7
Young, R.A.8
-
46
-
-
18844413266
-
Acetylation in histone H3 globular domain regulates gene expression in yeast
-
Xu, F., K. Zhang, and M. Grunstein. 2005. Acetylation in histone H3 globular domain regulates gene expression in yeast. Cell 121:1-11.
-
(2005)
Cell
, vol.121
, pp. 1-11
-
-
Xu, F.1
Zhang, K.2
Grunstein, M.3
-
47
-
-
0035116375
-
SPT genes: Key players in the regulation of transcription, chromatin structure and other cellular processes
-
Yamaguchi, Y., T. Narita, N. Inukai, T. Wada, and H. Handa. 2001. SPT genes: key players in the regulation of transcription, chromatin structure and other cellular processes. J. Biochem. 129:185-191.
-
(2001)
J. Biochem.
, vol.129
, pp. 185-191
-
-
Yamaguchi, Y.1
Narita, T.2
Inukai, N.3
Wada, T.4
Handa, H.5
-
48
-
-
0027143707
-
Isolation and characterization of the SUD1 gene, which encodes a global repressor of core promoter activity in Saccharomyces cerevisiae
-
Yamashita, I. 1993. Isolation and characterization of the SUD1 gene, which encodes a global repressor of core promoter activity in Saccharomyces cerevisiae. Mol. Gen. Genet. 241:616-626.
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(1993)
Mol. Gen. Genet.
, vol.241
, pp. 616-626
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Yamashita, I.1
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