DNA Sequence Plays a Major Role in Determining Nucleosome Positions in Yeast CUP1 Chromatin

Journal of Biological Chemistry

Volumn 276, Issue 37, 2001, Pages 35209-35216

  Shen, Chang Hui ^b   Clark, David J ^a  

^a NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES   (United States)

^b NONE

Author keywords

[No Author keywords available]

Indexed keywords

DNA; PURIFICATION; YEAST;

PLASMIDS;

BIOCHEMISTRY;

DNA; HISTONE; COPPER METALLOTHIONEIN; FUNGAL DNA; METALLOTHIONEIN;

ARTICLE; CHROMATIN STRUCTURE; CUP1 GENE; DNA SEQUENCE; GENE; NONHUMAN; NUCLEOSOME; PLASMID; PRIORITY JOURNAL; STRUCTURE ANALYSIS; YEAST CELL; CHEMISTRY; CHROMATIN; GENETICS; NUCLEOTIDE SEQUENCE; PROMOTER REGION; YEAST;

PROKARYOTA;

BASE SEQUENCE; CHROMATIN; DNA, FUNGAL; METALLOTHIONEIN; NUCLEOSOMES; PROMOTER REGIONS (GENETICS); YEASTS;

EID: 0035860797     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M104733200     Document Type: Article

References (56)

1. Luger, K., Mäder, A. W., Richmond, R. K., Sargent, D. F., and Richmond, T. J. (1997) Nature 389, 251-260
2. Grunstein, M. (1997) Nature 389, 349-352
3. Wolffe, A. P. (1999) Chromatin, Ed. 3, Academic Press, London
4. Simpson, R. T. (1991) Prog. Nucleic Acids Res. Mol. Biol. 40, 143-184
5. Wallrath, L. L., Lu, Q., Granok, H., and Elgin, S. C. R. (1994) Bioessays 16, 165-170
6. Dong, F., and van Holde, K. E. (1991) Proc. Natl. Acad. Sci. U. S. A. 88, 10596-10600
7. Lowary, P. T., and Widom, J. (1997) Proc. Natl. Acad. Sci. U. S. A. 94, 1183-1188
8. Simpson, R. T., and Stafford, D. W. (1983) Proc. Natl. Acad. Sci. U. S. A. 80, 51-55
9. Svaren, J., and Hörz, W. (1997) Trends Biochem. Sci. 22, 93-97
10. Kingston, R. E., and Narlikar, G. J. (1999) Genes Dev. 13, 2339-2352
11. Vignali, M., Hassan, A. H., Neely, K. E., and Workman, J. L. (2000) Mol. Cell. Biol. 20, 1899-1910
12. Lorch, Y., Cairns, B. R., Zhang, M., and Kornberg, R. D. (1998) Cell 94, 29-34
13. Schnitzler, G., Sif, S., and Kingston, R. E. (1998) Cell 94, 17-27
14. Bazett-Jones, D. P., Côté, J., Landel, C. C., Peterson, C. L., and Workman, J. L. (1999) Mol. Cell. Biol. 19, 1470-1478
15. Hamiche, A., Sandaltzopoulos, R., Gdula, D. A., and Wu, C. (1999) Cell 97, 833-842
16. Längst, G., Bonte, E. J., Corona, D. F. V., and Becker, P. B. (1999) Cell 97, 843-852
17. Lorch, Y., Zhang, M., and Kornberg, R. D. (1999) Cell 96, 389-392
18. Whitehouse, I., Flaus, A., Cairns, B. R., White, M. F., Workman, J. L., and Owen-Hughes, T. (1999) Nature 400, 784-787
19. Jaskelioff, M., Gavin, I. M., Peterson, C. L., and Logie, C. (2000) Mol. Cell. Biol. 20, 3058-3068
20. Shen, C.-H., Leblanc, B. P., Alfieri, J. A., and Clark, D. J. (2001) Mol. Cell. Biol. 21, 534-547
21. Butt, T. R., Sternberg, E. J., Gorman, J. A., Clark, P., Hamer, D., Rosenberg, M., and Crooke, S. T. (1984) Proc. Natl. Acad. Sci. U. S. A. 81, 3332-3336
22. Karin, M., Najarian, R., Haslinger, A., Valenzuela, A. P., Welch, J., and Fogel, S. (1984) Proc. Natl. Acad. Sci. U. S. A. 81, 337-341
23. Fürst, P., Hu, S., Hackett, R., and Hamer, D. (1988) Cell 55, 705-717
24. Buchman, C., Skroch, P., Welch, J., Fogel, S., and Kain, M. (1989) Mol. Cell. Biol. 9, 4091-4095
25. Culotta, V. C., Hsu, T., Hu, S., Fürst, P., and Hamer, D. (1989) Proc. Natl. Acad. Sci. U. S. A. 86, 8377-8381
26. Leblanc, B. P., Benham, C. J., and Clark, D. J. (2000) Proc. Natl. Acad. Sci. U. S. A. 97, 10745-10750
27. Yenidunya, A., Davey, C., Clark, D. J., Felsenfeld, G., and Allan, J. (1994) J. Mol. Biol. 237, 401-414
28. Clark, D. J., and Felsenfeld, G. (1991) EMBO J. 10, 387-395
29. Studitsky, V. M., Clark, D. J., and Felsenfeld, G. (1994) Cell 76, 371-382
30. Meersseman, G., Pennings, S., and Bradbury, E. M. (1992) EMBO J. 11, 2951-2959
31. Clark, D. J., and Felsenfeld, G. (1992) Cell 71, 11-22
32. Davey, C., Pennings, S., Meersseman, G., Wess, T. J., and Allan, J. (1995) Proc. Natl. Acad. Sci. U. S. A. 92, 11210-11214
33. Davey, C., Pennings, S., and Allan, J. (1997) J. Mol. Biol. 267, 276-288
34. Snyder, M., Buchman, A. R., and Davis, R. W. (1986) Nature 324, 87-89
35. Simpson, R. T. (1986) Bioessays 4, 172-176
36. Rhodes, D. (1985) EMBO J. 4, 3473-3482
37. Thoma, F., and Simpson, R. T. (1985) Nature 315, 250-252
38. Dong, F., Hansen, J. C., and van Holde, K. E. (1990) Proc. Natl. Acad. Sci. U. S. A. 87, 5724-5728
39. O'Donohue, M. F., Duband-Goulet, I., Hamiche, A., and Prunell, A. (1994) Nucleic Acids Res. 22, 937-945
40. Buttinelli, M., Di Mauro, E., and Negri, R. (1993) Proc. Natl. Acad. Sci. U. S. A. 90, 9315-9319
41. Zhang, X.-Y., and Hörz, W. (1984) J. Mol. Biol. 176, 105-129
42. Linxweiler, W., and Hörz, W. (1985) Cell 42, 281-290
43. Perlmann, T., and Wrange, O. (1988) EMBO J. 7, 3073-3079
44. Piña, B., Brüggemeier, U., and Beato, M. (1990) Cell 60, 719-731
45. Roberts, M. S., Fragoso, G., and Hager, G. L. (1995) Biochemistry 34, 12470-12480
46. Fragoso, G., John, S., Roberts, M. S., and Hager, G. L. (1995) Genes Dev. 9, 1933-1947
47. Buckle, R., Balmer, M., Yenidunya, A., and Allan, J. (1991) Nucleic Acids Res. 19, 1219-1226
48. McPherson, C. E., Shim, E., Friedman, D. S., and Zaret, K. S. (1993) Cell 75, 387-398
49. Shim, E., Woodcock, C., and Zaret, K. S. (1998) Genes Dev. 12, 5-10
50. Belikov, S., Gelius, B., Almouzni, G., and Wrange, O. (2000) EMBO J. 19, 1023-1033
51. Rainbow, M., Lopez, J., and Lohr, D. (1989) Biochemistry 28, 7486-7490
52. Ura, K., Kurumizaka, H., Dimitrov, S., Almouzni, G., and Wolffe, A. P. (1997) EMBO J. 16, 2096-2107
53. Flaus, A., and Richmond, T. J. (1998) J. Mol. Biol. 275, 427-441
54. Spadafora, C., Oudet, P., and Chambon, P. (1979) Eur. J. Biochem. 100, 225-235
55. Drew, H. R., and Travers, A. A. (1985) J. Mol. Biol. 186, 773-790
56. Puhl, H. L., and Behe, M. J. (1995) J. Mol. Biol. 245, 559-567