A preliminary study of heterotrophic picoflagellates using oligonucleotidic probes in Lake Pavin

Hydrobiologia

Volumn 551, Issue 1, 2005, Pages 61-67

  Lefèvre, Emilie ^a   Carrias, Jean François ^a   Bardot, Corinne ^a   Sime Ngando, Télesphore ^a   Amblard, Christian ^a  

^a UNIVERSITÉ CLERMONT AUVERGNE   (France)

Author keywords

Eukaryotes; Heterotrophic; Lake Pavin; Picoflagellates

Indexed keywords

CELLS; CLONING; FOOD PRODUCTS; RNA;

LAKE PAVIN; MARINE SYSTEMS; VERTICAL DISTRIBUTIONS;

BIODIVERSITY;

COMMUNITY COMPOSITION; FLAGELLATE; FOOD WEB; LAKE ECOSYSTEM; VERTICAL DISTRIBUTION;

AUVERGNE; EASTERN HEMISPHERE; EURASIA; EUROPE; FRANCE; MASSIF CENTRAL; PAVIN LAKE; PUY-DE-DOME; WESTERN EUROPE; WORLD;

EUKARYOTA; MASTIGOPHORA (FLAGELLATES); STRAMENOPILES;

EID: 26444473164     PISSN: 00188158     EISSN: 15735117     Source Type: Journal    
DOI: 10.1007/s10750-005-4450-5     Document Type: Conference Paper

References (25)

1. R. Adrian B. Schneider-Olt 1999 Top-down effects of crustacean zooplankton on pelagic microorganisms in a mesotrophic lake Journal of Plankton Research 21 2175 2190
2. R. Adrian A. Stephen S. A. Wickham N. M. Bulter 2001 Trophic interaction between zooplankton and the microbial community in contrasting food webs: the epilimnion and deep chlorophyll maximum of a mesotrophic lake Aquatic Microbial Ecology 24 83 97
3. C. Amblard 1988 Seasonal succession and strategies of phytoplankton development in two lakes of different trophic states Journal of Plankton Research 10 1189 1208
4. C. Amblard S. Rachiq G. Bourdier 1992 Photolithotrophy, photoheterotrophy and chemoheterotrophy during spring phytoplankton development (Lake Pavin) Microbial Ecology 24 109 123
5. Arndt, H., D. Dietrich, B. Auer, E. J. Cleven, T. Gräfenhan, M. Weitere & A. P. Mylnikov, 2000. Functional diversity of heterotrophic flagellates in aquatic ecosystems In Leadbeater, S. & Green, J. C. (eds), The Flagellates: Unity, Diversity and Evolution, The Systematics Association, Special volume series 59: 240-268.
6. J. F. Carrias C. Amblard G. Bourdier 1996 Protistan bacterivory in an oligomesotrophic lake: importance of attached ciliates and flagellates Microbial Ecology 31 249 268
7. J. F. Carrias C. Amblard G. Bourdier 1998a Seasonal dynamics and vertical distribution of planktonic ciliates and their relationship to microbial food resources in the oligomesotrophic Lake Pavin Archiv für Hydrobiologie 143 227 255
8. J. F. Carrias C. Amblard C. Quiblier-Lloberas G. Bourdier 1998b Seasonal dynamics of free and attached heterotrophic nanoflagellates in an oligomesotrophic lake Freshwater Biology 39 101 111
9. Delong, E. F., 1993. Single-cell identification using fluorescently labeled, ribosomal RNA-specific probes. In Kemp P. F., B. F. Sherr, E. B. Sherr & J. J. Cole (eds), Handbook of Methods in Aquatic Microbial Ecology. Lewis Publishers, Boca Raton, Fla, 285-294.
10. E. F. Delong L. T. Taylor T. L. Marsh C. M. Preston 1999 Visualization and enumeration of marine planktonic Archaea and bacteria by using polyribonucleotide probes and fluorescent in situ hybridization Applied and Environmental Microbiology 65 5554 5563
11. E. F. Delong G. S. Wickham N. R. Pace 1989 Phylogenetic stains: Ribosomal RNA-based probes for the identification of single cells Science 243 1360 1363
12. M. W. Hahn M. G. Höfle 2001 Grazing of protozoa and its effect on population of aquatic bacteria FEMS Microbiology Ecology 25 113 121
13. E. L. Lim L. A. Amaral D. A. Caron E. F. Delong 1993 Application of rRNA-based Probes for observing marine nanoplanktonic protists Applied and Environmental Microbiology 59 1647 1655
14. E. L. Lim 1996a Molecular identification of nanoplanktonic protists based on small subunit ribosomal RNA gene sequences for ecological studies Journal of Eukaryotic Microbiology 43 101 106
15. E. L. Lim D. A. Caron E. F. Delong 1996b Development and field application of a quantitative method for examining natural assemblages of protists with oligonucleotide probes Applied and Environmental Microbiology 62 1416 1423
16. J. W. G. Lund C. Kipling E. D. LeCren 1958 The inverted microscope method for estimating algal numbers and the statistic basis of estimation by counting Hydrobiologia 11 143 170
17. R. Massana L. Guillou B. Diez C. Pedros-Alios 2002 Unveiling the organisms behind novel eukaryotic ribosomal DNA sequences from the ocean Applied and Environmental Microbiology 68 4554 4558
18. A. Moter U. B. Göbel 2000 Fluorescence in situ hybridization (FISH) for direct visualization of microorganisms Journal of Microbiological Methods 41 85 112
19. F. Not N. Simon I. C. Biegala D. Vaulot 2002 Application of fluorescent in situ hybridization coupled with tyramide signal amplification (FISH-TSA) to assess eucaryotic picoplankton composition Aquatic Microbial Ecology 28 157 166
20. Parry, J. L. & J. Parry, 2000. Flagellates and the microbial loop. In Leadbeater, S. & J. C. Green (eds), The Flagellates: Unity, Diversity and Evolution, The Systematics Association, Special volume series 59: 216-239.
21. D. J. Patterson 1999 The diversity of eukaryotes American Naturalist 154 S96 S124
22. D. J. Patterson J. Larsen 1991 Nomenclature problems with protists Regnum Vegetabilis 123 197 208
23. Pernthaler, J., F. O. Glockner, W. Schonhuber & R. Amann, 2001. Fluorescence in situ hybridization (FISH) with rRNA-targeted oligonucleotide probes. In Paul, J. H. (ed.), Marine Microbiology. Academic press, London, United Kingdom, 207-226.
24. C. Quiblier-Lloberas G. Bourdier C. Amblard D. Pepin 1996 Impact of grazing on phytoplankton in Lake Pavin (France): Contribution of different zooplankton groups Journal of Plankton Research 18 305 322
25. W. Schönhuber B. Zarda S. Eix R. Rippka M. Herdman W. Ludwig R. Amann 1999 In situ identification of cyanobacteria with horseradish peroxidase-labeled, rRNA-targeted oligonucleotide probes Applied and Environmental Microbiology 65 1259 1267