Unveiling the organisms behind novel eukaryotic ribosomal DNA sequences from the ocean

Applied and Environmental Microbiology

Volumn 68, Issue 9, 2002, Pages 4554-4558

  Massana, Ramon ^a   Guillou, Laure ^a   Díez, Beatriz ^a   Pedrós Alió, Carlos ^a  

^a INSTITUT DE CIÈNCIES DEL MAR   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; DNA SEQUENCES; MORPHOLOGY; RNA;

HYBRIDIZATIONS;

MICROBIOLOGY;

RIBOSOME DNA;

ECOLOGY; EUKARYOTE; MARINE ECOSYSTEM; MORPHOLOGY; PHYLOGENY;

ARTICLE; COASTAL WATERS; EUKARYOTE; FLUORESCENCE IN SITU HYBRIDIZATION; FOOD WEB; GENE LIBRARY; GENE TARGETING; MARINE ENVIRONMENT; MORPHOLOGY; NONHUMAN; NUCLEOTIDE SEQUENCE; OLIGONUCLEOTIDE PROBE; PHYLOGENY; PHYLUM; SEA; SEQUENCE ANALYSIS;

ANIMALS; DNA, RIBOSOMAL; EUKARYOTIC CELLS; MARINE BIOLOGY; MOLECULAR SEQUENCE DATA; PHYLOGENY;

BACTERIA (MICROORGANISMS); EUKARYOTA; MASTIGOPHORA (FLAGELLATES); PROTOZOA; STRAMENOPILES;

EID: 0036727272     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.68.9.4554-4558.2002     Document Type: Article

References (31)

1. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
2. Phylogenetic identification and in situ detection of individual microbial cells without cultivation
3. Functional diversity of heterotrophic flagellates in aquatic systems
4. The phylogeny of plastids: A review based on comparisons of small-subunit ribosomal RNA coding regions
5. Picoplankton and nanoplankton and their trophic coupling in the surface waters of the Sargasso Sea south of Bermuda
6. Archaea in coastal marine environments
7. Study of genetic diversity of eukaryotic picoplankton in different oceanic regions by small-subunit rRNA gene cloning and sequencing
8. Ecology of heterotrophic microflagellates. I. Some important forms and their functional morphology
9. The ecology of heterotrophic microflagellates
10. Novel major archaebacterial group from marine plankton
11. SEAVIEW and PHYLO-WIN: Two graphic tools for sequence alignment and molecular phylogeny
12. Genetic diversity in Sargasso Sea bacterioplankton
13. Symbiomonas scintillans gen. et sp. nov. and Picophagus flagellatus gen. et sp. nov. (Heterokonta): Two new heterotrophic flagellates of picoplanktonic size
14. 16S-like rDNA sequences from Developayella elegans. Labyrinthuloides haliotidis, and Proteromonas lacertae confirm that the stramenopiles are a primarily heterotrophic group
15. Primary production of prochlorophytes, cyanobacteria, and eucaryotic ultraphytoplankton: Measurements from flow cytometric sorting
16. Application of rRNA-based probes for observing marine nanoplanktonic protists
17. The ecology of Paraphysomonas imperforata based on studies employing oligonucleotide probe identification in coastal water samples and enrichment cultures
18. Unexpected diversity of small eukaryotes in deep-sea Antarctic plankton
19. The RDP (Ribosomal Database Project) continues
20. Oceanic 18S rDNA sequences from picoplankton reveal unsuspected eukaryotic diversity
21. Stramenopiles: Chromophytes from a protistan perspective
22. Fluorescence in situ hybridization (FISH) with rRNA-targeted oligonucleotide probes
23. The use of DAPI for identifying and counting aquatic microflora
24. Trophic interactions between phytoplankton and micro- and nanozooplankton in the western Arabian Sea during the NE monsoon 1993
25. Use of monodispersed, fluorescently labeled bacteria to estimate in situ protozoan bacterivory
26. Heterotrophic protists in the Central Arctic Ocean
27. Marine microbes. An overview
28. Fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes to identify small phytoplankton by flow cytometry
29. Heterotrophic flagellates and other protists from Southampton Water, U.K.
30. Determination of microbial diversity in environmental samples: Pitfalls of PCR-based rRNA analysis