메뉴 건너뛰기




Volumn 22, Issue 11, 2005, Pages 2285-2296

The comparison of the confidence regions in phylogeny

Author keywords

Bootstrap; Confidence region; Coverage; Likelihood; Test

Indexed keywords

ARTICLE; DNA SEQUENCE; EVALUATION; GENE SEQUENCE; MATHEMATICAL MODEL; MOLECULAR EVOLUTION; MOLECULAR MODEL; PHYLOGENY; SIMULATION; TAXON;

EID: 26444466173     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msi226     Document Type: Article
Times cited : (28)

References (23)
  • 1
    • 0037308498 scopus 로고    scopus 로고
    • When being 'most likely' is not enough: Examining the performance of three uses of the parametric bootstrap in phylogenetics
    • Antezana, M. 2003. When being 'most likely' is not enough: examining the performance of three uses of the parametric bootstrap in phylogenetics. J. Mol. Evol. 56:198-222.
    • (2003) J. Mol. Evol. , vol.56 , pp. 198-222
    • Antezana, M.1
  • 2
    • 0036623259 scopus 로고    scopus 로고
    • Model misspecification and probabilistic tests of topology: Evidence from empirical data sets
    • Buckley, T. 2002. Model misspecification and probabilistic tests of topology: evidence from empirical data sets. Syst. Biol. 51:509-523.
    • (2002) Syst. Biol. , vol.51 , pp. 509-523
    • Buckley, T.1
  • 3
    • 0026005922 scopus 로고
    • Use of the method of generalized least squares in reconstructing phylogenies from sequence data
    • Bulmer, M. 1991. Use of the method of generalized least squares in reconstructing phylogenies from sequence data. Mol. Biol. 8:868-883.
    • (1991) Mol. Biol. , vol.8 , pp. 868-883
    • Bulmer, M.1
  • 4
    • 0000156374 scopus 로고
    • Phylogenetic analysis: Models and estimation procedures
    • Cavalli-Sforza, L., and W. Edwards. 1967. Phylogenetic analysis: models and estimation procedures. Evolution 32:550-570.
    • (1967) Evolution , vol.32 , pp. 550-570
    • Cavalli-Sforza, L.1    Edwards, W.2
  • 5
    • 0030581603 scopus 로고    scopus 로고
    • Bootstrap confidence levels for phylogenetic trees
    • USA
    • Efron, B., E. Halloran, and S. Holmes. 1996. Bootstrap confidence levels for phylogenetic trees. Proc. Natl. Acad. Sci. USA 93:13429-13434.
    • (1996) Proc. Natl. Acad. Sci. , vol.93 , pp. 13429-13434
    • Efron, B.1    Halloran, E.2    Holmes, S.3
  • 6
    • 0032264630 scopus 로고    scopus 로고
    • The problem of regions
    • Efron, B., and R. Tibshirani. 1998. The problem of regions. Ann. Stat. 26:1687-1718.
    • (1998) Ann. Stat. , vol.26 , pp. 1687-1718
    • Efron, B.1    Tibshirani, R.2
  • 7
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • Felsenstein, J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17:368-376.
    • (1981) J. Mol. Evol. , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 8
    • 0034351387 scopus 로고    scopus 로고
    • Likelihood-based tests of topologies in phylogenetics
    • Goldman, N., J. Anderson, and A. Rodrigo. 2000. Likelihood-based tests of topologies in phylogenetics. Syst. Biol. 49:652-670.
    • (2000) Syst. Biol. , vol.49 , pp. 652-670
    • Goldman, N.1    Anderson, J.2    Rodrigo, A.3
  • 9
    • 0022376704 scopus 로고
    • Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
    • Hasegawa, M., H. Kishino, and T. Yano. 1985. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 21:160-174.
    • (1985) J. Mol. Evol. , vol.21 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 10
    • 0000704795 scopus 로고    scopus 로고
    • Applications of molecular systematics: The state of the field and a look to the future
    • D. Hillis, C. Moritz, and B. K. Mable, eds. Sinauer, Sunderland, Mass.
    • Hillis, D., B. Mable, and C. Moritz. 1996. Applications of molecular systematics: the state of the field and a look to the future. Pp. 515-543 in D. Hillis, C. Moritz, and B. K. Mable, eds. Molecular systematics. Sinauer, Sunderland, Mass.
    • (1996) Molecular Systematics , pp. 515-543
    • Hillis, D.1    Mable, B.2    Moritz, C.3
  • 11
    • 12044255023 scopus 로고
    • Success of phylogenetic methods in the four-taxon case
    • Huelsenbeck, J., and D. Hillis. 1993. Success of phylogenetic methods in the four-taxon case. Syst. Biol. 42:247-264.
    • (1993) Syst. Biol. , vol.42 , pp. 247-264
    • Huelsenbeck, J.1    Hillis, D.2
  • 12
    • 0024307824 scopus 로고
    • Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea
    • Kishino, H., and M. Hasegawa. 1989. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea. J. Mol. Evol. 29:170-179.
    • (1989) J. Mol. Evol. , vol.29 , pp. 170-179
    • Kishino, H.1    Hasegawa, M.2
  • 13
    • 0035252080 scopus 로고    scopus 로고
    • Molecular phylogenetics and the origins of placental mammals
    • Murphy, W., E. Eizirik, W. Johnson, Y. Zhang, O. Ryder, and S. O'Brien. 2001. Molecular phylogenetics and the origins of placental mammals. Nature 409:614-618.
    • (2001) Nature , vol.409 , pp. 614-618
    • Murphy, W.1    Eizirik, E.2    Johnson, W.3    Zhang, Y.4    Ryder, O.5    O'Brien, S.6
  • 14
    • 0030928378 scopus 로고    scopus 로고
    • Seq-Gen: An application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees
    • Rambaut, A., and N. Grassly. 1997. Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees. Comput. Appl. Biosci. 13:235-238.
    • (1997) Comput. Appl. Biosci. , vol.13 , pp. 235-238
    • Rambaut, A.1    Grassly, N.2
  • 15
    • 0036623258 scopus 로고    scopus 로고
    • An approximately unbiased test of phylogenetic tree selection
    • Shimodaira, H. 2002. An approximately unbiased test of phylogenetic tree selection. Syst. Biol. 51:492-508.
    • (2002) Syst. Biol. , vol.51 , pp. 492-508
    • Shimodaira, H.1
  • 16
    • 0032766857 scopus 로고    scopus 로고
    • Multiple comparisons of log-likelihoods with applications to phylogenetic inference
    • Shimodaira, H., and M. Hasegawa. 1999. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol. Biol. Evol. 16:1114-1116.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 1114-1116
    • Shimodaira, H.1    Hasegawa, M.2
  • 17
    • 0036139287 scopus 로고    scopus 로고
    • CONSEL: For assessing the confidence of phylogenetic tree selection
    • _. 2001. CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics 17:1246-1247.
    • (2001) Bioinformatics , vol.17 , pp. 1246-1247
  • 19
    • 41049111540 scopus 로고    scopus 로고
    • Inferring confidence sets of possibly misspecified gene trees
    • Strimmer, K., and A. Rambaut. 2001. Inferring confidence sets of possibly misspecified gene trees. Proc. R. Soc. Lond. B 269:137-142.
    • (2001) Proc. R. Soc. Lond. B , vol.269 , pp. 137-142
    • Strimmer, K.1    Rambaut, A.2
  • 20
    • 0038586502 scopus 로고    scopus 로고
    • Confidence regions and hypothesis tests for topologies using generalized least squares
    • Susko, E. 2003. Confidence regions and hypothesis tests for topologies using generalized least squares. Mol. Biol. Evol. 20:862-868.
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 862-868
    • Susko, E.1
  • 22
    • 0001336205 scopus 로고    scopus 로고
    • Phylogenetic inference
    • D. Hillis, C. Moritz, and B. K. Mable, eds. Sinauer, Sunderland, Mass.
    • Swofford, D., G. Olsen, P. Waddell, and D. Hillis. 1996. Phylogenetic inference. Pp. 407-514 in D. Hillis, C. Moritz, and B. K. Mable, eds. Molecular systematics. Sinauer, Sunderland, Mass.
    • (1996) Molecular Systematics , pp. 407-514
    • Swofford, D.1    Olsen, G.2    Waddell, P.3    Hillis, D.4
  • 23
    • 0036699481 scopus 로고    scopus 로고
    • Increased taxon sampling greatly reduces phylogenetic error
    • Zwickl, D., and D. Hillis. 2002. Increased taxon sampling greatly reduces phylogenetic error. Syst. Biol. 51:588-598.
    • (2002) Syst. Biol. , vol.51 , pp. 588-598
    • Zwickl, D.1    Hillis, D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.