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Volumn 6, Issue 1, 2004, Pages 257-262

Synthesis, purification and crystallization of guanine-rich RNA oligonucleotides

Author keywords

Crystallization; Isolation and purification; Oligonucleotides

Indexed keywords

BARIUM ION; BUFFER; CALCIUM ION; GUANINE; MAGNESIUM ION; METAL ION; OLIGONUCLEOTIDE; POTASSIUM ION; RNA; SODIUM ION; STRONTIUM;

EID: 25444530328     PISSN: 14809222     EISSN: None     Source Type: Journal    
DOI: 10.1251/bpo96     Document Type: Article
Times cited : (6)

References (37)
  • 1
    • 0027533742 scopus 로고
    • Evidence for interstrand quadruplex formation in the dimerization of human immunodeficiency virus 1 genomic RNA
    • Sundquist WI, Heaphy S. Evidence for interstrand quadruplex formation in the dimerization of human immunodeficiency virus 1 genomic RNA. Proc Natl Acad Sci USA 1993; 90:3393-3397.
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 3393-3397
    • Sundquist, W.I.1    Heaphy, S.2
  • 2
    • 0028556501 scopus 로고
    • A guanosine quadruplex and two stable hairpins flank a major cleavage site in insulin-like growth factor II mRNA
    • Christiansen J, Kofod M, Nielsen FC. A guanosine quadruplex and two stable hairpins flank a major cleavage site in insulin-like growth factor II mRNA. Nucl Acids Res 1994; 22:5709-5716.
    • (1994) Nucl. Acids Res. , vol.22 , pp. 5709-5716
    • Christiansen, J.1    Kofod, M.2    Nielsen, F.C.3
  • 3
    • 0031030491 scopus 로고    scopus 로고
    • A mouse cytoplasmic exoribonuclease (mXRN1p) with preference for G4 tetraplex substrates
    • Bashkirov VI, Scherthan H, Solinger JA, Buerstedde WD. A mouse cytoplasmic exoribonuclease (mXRN1p) with preference for G4 tetraplex substrates. J Cell Biol 1997; 136:761-773.
    • (1997) J. Cell Biol. , vol.136 , pp. 761-773
    • Bashkirov, V.I.1    Scherthan, H.2    Solinger, J.A.3    Buerstedde, W.D.4
  • 4
    • 14344275144 scopus 로고    scopus 로고
    • Biological aspects of DNA/RNA quadruplexes
    • Shafer RH, Smirnov I. Biological aspects of DNA/RNA quadruplexes. Biopolymers 2001; 56:209-227.
    • (2001) Biopolymers , vol.56 , pp. 209-227
    • Shafer, R.H.1    Smirnov, I.2
  • 5
    • 0030595330 scopus 로고    scopus 로고
    • Translational recoding induced by G-rich mRNA sequences that form unusual structure
    • Horsburgh BC, Kollmus H, Hauser H, Coen DM. Translational recoding induced by G-rich mRNA sequences that form unusual structure. Cell 1996; 86:949-959.
    • (1996) Cell , vol.86 , pp. 949-959
    • Horsburgh, B.C.1    Kollmus, H.2    Hauser, H.3    Coen, D.M.4
  • 6
    • 0034637462 scopus 로고    scopus 로고
    • Identification of a GA-rich sequence as a protein-binding site in the 3′-untranslated region of chicken elastin mRNA with a potential role in the developmental regulation of elastin mRNA stability
    • Hew Y, Lau C, Grzelczak Z, Keeley FWJ. Identification of a GA-rich sequence as a protein-binding site in the 3′-untranslated region of chicken elastin mRNA with a potential role in the developmental regulation of elastin mRNA stability. J Biol Chem 2000; 275:24857-24864.
    • (2000) J. Biol. Chem. , vol.275 , pp. 24857-24864
    • Hew, Y.1    Lau, C.2    Grzelczak, Z.3    Keeley, F.W.J.4
  • 7
    • 0024967079 scopus 로고
    • Translation of chloroplast-encoded mRNA: Potential initiation and termination signals
    • Bonham-Smith PC, Bourque DP. Translation of chloroplast-encoded mRNA: potential initiation and termination signals. Nucl Acids Res 1989; 17:2057-2080.
    • (1989) Nucl. Acids Res. , vol.17 , pp. 2057-2080
    • Bonham-Smith, P.C.1    Bourque, D.P.2
  • 8
    • 0035801393 scopus 로고    scopus 로고
    • The fragile X mental retardation protein binds specifically to its mRNA via a purine quartet motif
    • Schaeffer C, Bardoni B, Mandel JL, Ehresmann B, Ehresmann C, Moine H. The fragile X mental retardation protein binds specifically to its mRNA via a purine quartet motif. EMBO J 2001; 20:4803-4813.
    • (2001) EMBO J. , vol.20 , pp. 4803-4813
    • Schaeffer, C.1    Bardoni, B.2    Mandel, J.L.3    Ehresmann, B.4    Ehresmann, C.5    Moine, H.6
  • 10
    • 0029052435 scopus 로고
    • The G-rich auxiliary downstream element has distinct sequence and position requirements and mediates efficient 3′ end pre-mRNA processing through a trans-acting factor
    • Bagga PS, Fordm LP, Chen F, Wilusz J. The G-rich auxiliary downstream element has distinct sequence and position requirements and mediates efficient 3′ end pre-mRNA processing through a trans-acting factor. Nucl Acids Res 1995; 23:1625-1631.
    • (1995) Nucl. Acids Res. , vol.23 , pp. 1625-1631
    • Bagga, P.S.1    Fordm, L.P.2    Chen, F.3    Wilusz, J.4
  • 11
    • 0032404113 scopus 로고    scopus 로고
    • DSEF-1 is a member of the hnRNP H family of RNA-binding proteins and stimulates pre-mRNA cleavage and polyadenylation in vitro
    • Bagga PS, Arhin GK, Wilusz J. DSEF-1 is a member of the hnRNP H family of RNA-binding proteins and stimulates pre-mRNA cleavage and polyadenylation in vitro. Nucl Acids Res 1998; 26:5343-5350.
    • (1998) Nucl. Acids Res. , vol.26 , pp. 5343-5350
    • Bagga, P.S.1    Arhin, G.K.2    Wilusz, J.3
  • 12
    • 0002216849 scopus 로고    scopus 로고
    • Structures of guanine-rich and cytosine-rich quadruplexes formed in vitro by telomeric, centromeric, and triplet repeat disease DNA sequences
    • S. Neidle, ed. (Oxford University Press)
    • Patel DJ, Bouaziz S, Kettani A, Wang Y. Structures of guanine-rich and cytosine-rich quadruplexes formed in vitro by telomeric, centromeric, and triplet repeat disease DNA sequences. In Oxford Handbook of Nucleic Acid Structure, S. Neidle, ed. (Oxford University Press), 1999. p. 389-453.
    • (1999) Oxford Handbook of Nucleic Acid Structure , pp. 389-453
    • Patel, D.J.1    Bouaziz, S.2    Kettani, A.3    Wang, Y.4
  • 14
    • 0037142071 scopus 로고    scopus 로고
    • Crystal structure of parallel quadruplexes from human telomeric DNA
    • Parkinson GN, Lee MPH, Neidle S. Crystal structure of parallel quadruplexes from human telomeric DNA. Nature 2002; 417:876-880.
    • (2002) Nature , vol.417 , pp. 876-880
    • Parkinson, G.N.1    Lee, M.P.H.2    Neidle, S.3
  • 15
    • 0036290781 scopus 로고    scopus 로고
    • Crystal structure of the potassion form of an oxytricha nova G-quadruplex
    • Haider S, Parkinson GN, Neidle S. Crystal structure of the potassion form of an oxytricha nova G-quadruplex. J Mol Biol 2002; 320:189-200.
    • (2002) J. Mol. Biol. , vol.320 , pp. 189-200
    • Haider, S.1    Parkinson, G.N.2    Neidle, S.3
  • 16
    • 0038681084 scopus 로고    scopus 로고
    • Crystal structure of an RNA purine-rich tetraplex containing adenine-tetrads: Implications for specific binding in RNA tetraplex
    • Pan B, Xiong Y, Shi K, Deng J, Sundaralingam M. Crystal structure of an RNA purine-rich tetraplex containing adenine-tetrads: implications for specific binding in RNA tetraplex. Structure 2003; 11:815-823.
    • (2003) Structure , vol.11 , pp. 815-823
    • Pan, B.1    Xiong, Y.2    Shi, K.3    Deng, J.4    Sundaralingam, M.5
  • 17
    • 0037970596 scopus 로고    scopus 로고
    • An eight-stranded helical fragment in RNA crystal structure: Implications for tetraplex interaction
    • Pan B, Xiong Y, Shi K, Sundaralingam M. An eight-stranded helical fragment in RNA crystal structure: implications for tetraplex interaction. Structure 2003; 11:825-831.
    • (2003) Structure , vol.11 , pp. 825-831
    • Pan, B.1    Xiong, Y.2    Shi, K.3    Sundaralingam, M.4
  • 18
    • 0242710951 scopus 로고    scopus 로고
    • Crystal structure of a bulged RNA tetraplex at 1.1Å resolution: Implications for a novel binding site in RNA tetraplex
    • Pan B, Xiong Y, Shi K, Sundaralingam M. Crystal structure of a bulged RNA tetraplex at 1.1Å resolution: implications for a novel binding site in RNA tetraplex. Structure 2003; 11:1423-1430.
    • (2003) Structure , vol.11 , pp. 1423-1430
    • Pan, B.1    Xiong, Y.2    Shi, K.3    Sundaralingam, M.4
  • 19
    • 0026430355 scopus 로고
    • Tetramerization of an RNA oligonucleotide containing a GGGG sequence
    • Kim J, Cheong C, Moore PB. Tetramerization of an RNA oligonucleotide containing a GGGG sequence. Nature 1991; 351:331-332.
    • (1991) Nature , vol.351 , pp. 331-332
    • Kim, J.1    Cheong, C.2    Moore, P.B.3
  • 20
    • 0026737313 scopus 로고
    • Solution structure of an unusually stable RNA tetraplex containing G and U-quartet structures
    • Cheong C, Moore PB. Solution structure of an unusually stable RNA tetraplex containing G and U-quartet structures. Biochemistry 1992; 36:8406-8414.
    • (1992) Biochemistry , vol.36 , pp. 8406-8414
    • Cheong, C.1    Moore, P.B.2
  • 22
    • 0031576353 scopus 로고    scopus 로고
    • The crystal structure of a parallel-stranded guanine tetraplex at 0.95 Å resolution
    • Phillips K, Dauter Z, Murchie AIH, Lilley DMJ, Luisi B. The crystal structure of a parallel-stranded guanine tetraplex at 0.95 Å resolution. J Mol Biol 1997; 273:171-182.
    • (1997) J. Mol. Biol. , vol.273 , pp. 171-182
    • Phillips, K.1    Dauter, Z.2    Murchie, A.I.H.3    Lilley, D.M.J.4    Luisi, B.5
  • 23
    • 0027105233 scopus 로고
    • Large scale chemical synthesis, purification and crystallization of RNA-DNA chimeras
    • Usman N, Egli M, Rich A. Large scale chemical synthesis, purification and crystallization of RNA-DNA chimeras. Nucl Acids Res 1992; 20:6695-6699.
    • (1992) Nucl. Acids Res. , vol.20 , pp. 6695-6699
    • Usman, N.1    Egli, M.2    Rich, A.3
  • 25
    • 0029020003 scopus 로고
    • Crystallization of RNA-protein complexes. I. Methods for the large-scale preparation of RNA suitable for crystallographic studies
    • Price SR, Ito N, Oubridge C, Avis JM, Nagai K. Crystallization of RNA-protein complexes. I. Methods for the large-scale preparation of RNA suitable for crystallographic studies. J Mol Biol 1995; 249:398-408.
    • (1995) J. Mol. Biol. , vol.249 , pp. 398-408
    • Price, S.R.1    Ito, N.2    Oubridge, C.3    Avis, J.M.4    Nagai, K.5
  • 27
    • 0030132944 scopus 로고    scopus 로고
    • A highly efficient 24-condition matrix fo the crystallization of nucleic acid fragments
    • Berger I, Kang C, Sinha N, Wolters M, Rich A. A highly efficient 24-condition matrix fo the crystallization of nucleic acid fragments. Acta Crystallog D 1996; 52:465-468.
    • (1996) Acta Crystallog. D , vol.52 , pp. 465-468
    • Berger, I.1    Kang, C.2    Sinha, N.3    Wolters, M.4    Rich, A.5
  • 30
    • 0025649498 scopus 로고
    • Four-stranded nucleic acid structure 25 years later: From guanosine gels to telomer DNA
    • Guschlbauer W, Chantot JF, Thiele D. Four-stranded nucleic acid structure 25 years later: From guanosine gels to telomer DNA. J Biomol Struct Dyn 1990; 8:491-511.
    • (1990) J. Biomol. Struct. Dyn. , vol.8 , pp. 491-511
    • Guschlbauer, W.1    Chantot, J.F.2    Thiele, D.3
  • 32
    • 0028205651 scopus 로고
    • A general purification procedure for chemically synthesized oligoribonucleotides
    • Murray JB, Collier AK, Arnold JR. A general purification procedure for chemically synthesized oligoribonucleotides. Anal Biochem 1994; 218:177-184.
    • (1994) Anal. Biochem. , vol.218 , pp. 177-184
    • Murray, J.B.1    Collier, A.K.2    Arnold, J.R.3
  • 34
    • 0024787884 scopus 로고
    • Monovalent cation-induced structure of telomeric DNA: The G-quartet model
    • Williamson JR, Raghuraman MK, Cech TR. Monovalent cation-induced structure of telomeric DNA: the G-quartet model. Cell 1989; 59:871-880.
    • (1989) Cell , vol.59 , pp. 871-880
    • Williamson, J.R.1    Raghuraman, M.K.2    Cech, T.R.3
  • 35
    • 0027990373 scopus 로고
    • Structure and stability of human telomeric sequence
    • Balagurumoorthy P, Brahmachari K. Structure and stability of human telomeric sequence. J Biol Chem 1994; 269:21858-21869.
    • (1994) J. Biol. Chem. , vol.269 , pp. 21858-21869
    • Balagurumoorthy, P.1    Brahmachari, K.2
  • 36
    • 0032566629 scopus 로고    scopus 로고
    • Solution structure of a Na cation stabilized DNA quadruplex containing G-G-G-G and G-C-G-C tetrads formed by G-G-G-C repeats observed in adeno-associated viral DNA
    • Kettani A, Bouaziz S, Gorin A, Zhao J, Jones RA, Patel DJ. Solution structure of a Na cation stabilized DNA quadruplex containing G-G-G-G and G-C-G-C tetrads formed by G-G-G-C repeats observed in adeno-associated viral DNA. J Mol Biol 1998; 282:619-636.
    • (1998) J. Mol. Biol. , vol.282 , pp. 619-636
    • Kettani, A.1    Bouaziz, S.2    Gorin, A.3    Zhao, J.4    Jones, R.A.5    Patel, D.J.6
  • 37
    • 0032566709 scopus 로고    scopus 로고
    • A K cation-induced conformational switch within a loop panning segment of a DNA quadruplex containing G-G-G-C repeats
    • Bouaziz S, Kettani A, Patel DJ. A K cation-induced conformational switch within a loop panning segment of a DNA quadruplex containing G-G-G-C repeats. J Mol Biol 1998; 282:637-652.
    • (1998) J. Mol. Biol. , vol.282 , pp. 637-652
    • Bouaziz, S.1    Kettani, A.2    Patel, D.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.